data_6B6N # _model_server_result.job_id MNHjRQOKkGoTh4opb58gyQ _model_server_result.datetime_utc '2024-11-23 04:08:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b6n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 6B6N # _exptl.entry_id 6B6N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6B6N _cell.length_a 54.692 _cell.length_b 58.538 _cell.length_c 67.576 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B6N _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc5 B CA CA . A CA 301 1_555 G O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc6 B CA CA . A CA 301 1_555 G O HOH . A HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 254 n n C1 H1C1 MRD sing 255 n n C1 H1C2 MRD sing 256 n n C1 H1C3 MRD sing 257 n n C2 O2 MRD sing 258 n n C2 CM MRD sing 259 n n C2 C3 MRD sing 260 n n O2 H2 MRD sing 261 n n CM HMC1 MRD sing 262 n n CM HMC2 MRD sing 263 n n CM HMC3 MRD sing 264 n n C3 C4 MRD sing 265 n n C3 H3C1 MRD sing 266 n n C3 H3C2 MRD sing 267 n n C4 O4 MRD sing 268 n n C4 C5 MRD sing 269 n n C4 H4 MRD sing 270 n n O4 HA MRD sing 271 n n C5 H5C1 MRD sing 272 n n C5 H5C2 MRD sing 273 n n C5 H5C3 MRD sing 274 n n # _atom_sites.entry_id 6B6N _atom_sites.fract_transf_matrix[1][1] 0.018284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 301 CA CA . C 3 BEN A 1 302 302 BEN BEN . D 4 SO4 A 1 303 303 SO4 SO4 . E 5 MRD A 1 304 311 MRD MRD . F 5 MRD A 1 305 312 MRD MRD . G 6 HOH A 1 401 1002 HOH HOH . G 6 HOH A 2 402 1148 HOH HOH . G 6 HOH A 3 403 1128 HOH HOH . G 6 HOH A 4 404 1035 HOH HOH . G 6 HOH A 5 405 1098 HOH HOH . G 6 HOH A 6 406 1117 HOH HOH . G 6 HOH A 7 407 1018 HOH HOH . G 6 HOH A 8 408 1114 HOH HOH . G 6 HOH A 9 409 1076 HOH HOH . G 6 HOH A 10 410 1016 HOH HOH . G 6 HOH A 11 411 1070 HOH HOH . G 6 HOH A 12 412 1161 HOH HOH . G 6 HOH A 13 413 1127 HOH HOH . G 6 HOH A 14 414 1074 HOH HOH . G 6 HOH A 15 415 1067 HOH HOH . G 6 HOH A 16 416 1041 HOH HOH . G 6 HOH A 17 417 1072 HOH HOH . G 6 HOH A 18 418 1029 HOH HOH . G 6 HOH A 19 419 1034 HOH HOH . G 6 HOH A 20 420 1079 HOH HOH . G 6 HOH A 21 421 1032 HOH HOH . G 6 HOH A 22 422 1091 HOH HOH . G 6 HOH A 23 423 1145 HOH HOH . G 6 HOH A 24 424 1158 HOH HOH . G 6 HOH A 25 425 1093 HOH HOH . G 6 HOH A 26 426 1102 HOH HOH . G 6 HOH A 27 427 1014 HOH HOH . G 6 HOH A 28 428 1049 HOH HOH . G 6 HOH A 29 429 1010 HOH HOH . G 6 HOH A 30 430 1065 HOH HOH . G 6 HOH A 31 431 1030 HOH HOH . G 6 HOH A 32 432 1087 HOH HOH . G 6 HOH A 33 433 1124 HOH HOH . G 6 HOH A 34 434 1057 HOH HOH . G 6 HOH A 35 435 1069 HOH HOH . G 6 HOH A 36 436 1005 HOH HOH . G 6 HOH A 37 437 1073 HOH HOH . G 6 HOH A 38 438 1019 HOH HOH . G 6 HOH A 39 439 1146 HOH HOH . G 6 HOH A 40 440 1033 HOH HOH . G 6 HOH A 41 441 1008 HOH HOH . G 6 HOH A 42 442 1006 HOH HOH . G 6 HOH A 43 443 1060 HOH HOH . G 6 HOH A 44 444 1115 HOH HOH . G 6 HOH A 45 445 1027 HOH HOH . G 6 HOH A 46 446 1026 HOH HOH . G 6 HOH A 47 447 1052 HOH HOH . G 6 HOH A 48 448 1110 HOH HOH . G 6 HOH A 49 449 1167 HOH HOH . G 6 HOH A 50 450 1169 HOH HOH . G 6 HOH A 51 451 1003 HOH HOH . G 6 HOH A 52 452 1025 HOH HOH . G 6 HOH A 53 453 1017 HOH HOH . G 6 HOH A 54 454 1044 HOH HOH . G 6 HOH A 55 455 1129 HOH HOH . G 6 HOH A 56 456 1122 HOH HOH . G 6 HOH A 57 457 1047 HOH HOH . G 6 HOH A 58 458 1092 HOH HOH . G 6 HOH A 59 459 1125 HOH HOH . G 6 HOH A 60 460 1062 HOH HOH . G 6 HOH A 61 461 1151 HOH HOH . G 6 HOH A 62 462 1007 HOH HOH . G 6 HOH A 63 463 1141 HOH HOH . G 6 HOH A 64 464 1020 HOH HOH . G 6 HOH A 65 465 1120 HOH HOH . G 6 HOH A 66 466 1083 HOH HOH . G 6 HOH A 67 467 1040 HOH HOH . G 6 HOH A 68 468 1166 HOH HOH . G 6 HOH A 69 469 1022 HOH HOH . G 6 HOH A 70 470 1064 HOH HOH . G 6 HOH A 71 471 1001 HOH HOH . G 6 HOH A 72 472 1031 HOH HOH . G 6 HOH A 73 473 1011 HOH HOH . G 6 HOH A 74 474 1009 HOH HOH . G 6 HOH A 75 475 1013 HOH HOH . G 6 HOH A 76 476 1109 HOH HOH . G 6 HOH A 77 477 1143 HOH HOH . G 6 HOH A 78 478 1155 HOH HOH . G 6 HOH A 79 479 1015 HOH HOH . G 6 HOH A 80 480 1165 HOH HOH . G 6 HOH A 81 481 1111 HOH HOH . G 6 HOH A 82 482 1053 HOH HOH . G 6 HOH A 83 483 1162 HOH HOH . G 6 HOH A 84 484 1157 HOH HOH . G 6 HOH A 85 485 1063 HOH HOH . G 6 HOH A 86 486 1173 HOH HOH . G 6 HOH A 87 487 1171 HOH HOH . G 6 HOH A 88 488 1042 HOH HOH . G 6 HOH A 89 489 1116 HOH HOH . G 6 HOH A 90 490 1112 HOH HOH . G 6 HOH A 91 491 1024 HOH HOH . G 6 HOH A 92 492 1023 HOH HOH . G 6 HOH A 93 493 1149 HOH HOH . G 6 HOH A 94 494 1121 HOH HOH . G 6 HOH A 95 495 1028 HOH HOH . G 6 HOH A 96 496 1164 HOH HOH . G 6 HOH A 97 497 1021 HOH HOH . G 6 HOH A 98 498 1048 HOH HOH . G 6 HOH A 99 499 1132 HOH HOH . G 6 HOH A 100 500 1066 HOH HOH . G 6 HOH A 101 501 1156 HOH HOH . G 6 HOH A 102 502 1153 HOH HOH . G 6 HOH A 103 503 1054 HOH HOH . G 6 HOH A 104 504 1137 HOH HOH . G 6 HOH A 105 505 1056 HOH HOH . G 6 HOH A 106 506 1061 HOH HOH . G 6 HOH A 107 507 1059 HOH HOH . G 6 HOH A 108 508 1168 HOH HOH . G 6 HOH A 109 509 1154 HOH HOH . G 6 HOH A 110 510 1126 HOH HOH . G 6 HOH A 111 511 1045 HOH HOH . G 6 HOH A 112 512 1039 HOH HOH . G 6 HOH A 113 513 1108 HOH HOH . G 6 HOH A 114 514 1144 HOH HOH . G 6 HOH A 115 515 1050 HOH HOH . G 6 HOH A 116 516 1118 HOH HOH . G 6 HOH A 117 517 1004 HOH HOH . G 6 HOH A 118 518 1088 HOH HOH . G 6 HOH A 119 519 1012 HOH HOH . G 6 HOH A 120 520 1113 HOH HOH . G 6 HOH A 121 521 1170 HOH HOH . G 6 HOH A 122 522 1077 HOH HOH . G 6 HOH A 123 523 1037 HOH HOH . G 6 HOH A 124 524 1043 HOH HOH . G 6 HOH A 125 525 1075 HOH HOH . G 6 HOH A 126 526 1058 HOH HOH . G 6 HOH A 127 527 1133 HOH HOH . G 6 HOH A 128 528 1139 HOH HOH . G 6 HOH A 129 529 1071 HOH HOH . G 6 HOH A 130 530 1105 HOH HOH . G 6 HOH A 131 531 1094 HOH HOH . G 6 HOH A 132 532 1100 HOH HOH . G 6 HOH A 133 533 1134 HOH HOH . G 6 HOH A 134 534 1096 HOH HOH . G 6 HOH A 135 535 1174 HOH HOH . G 6 HOH A 136 536 1131 HOH HOH . G 6 HOH A 137 537 1068 HOH HOH . G 6 HOH A 138 538 1103 HOH HOH . G 6 HOH A 139 539 1147 HOH HOH . G 6 HOH A 140 540 1138 HOH HOH . G 6 HOH A 141 541 1160 HOH HOH . G 6 HOH A 142 542 1084 HOH HOH . G 6 HOH A 143 543 1046 HOH HOH . G 6 HOH A 144 544 1038 HOH HOH . G 6 HOH A 145 545 1086 HOH HOH . G 6 HOH A 146 546 1163 HOH HOH . G 6 HOH A 147 547 1036 HOH HOH . G 6 HOH A 148 548 1082 HOH HOH . G 6 HOH A 149 549 1142 HOH HOH . G 6 HOH A 150 550 1099 HOH HOH . G 6 HOH A 151 551 1055 HOH HOH . G 6 HOH A 152 552 1107 HOH HOH . G 6 HOH A 153 553 1080 HOH HOH . G 6 HOH A 154 554 1136 HOH HOH . G 6 HOH A 155 555 1135 HOH HOH . G 6 HOH A 156 556 1172 HOH HOH . G 6 HOH A 157 557 1150 HOH HOH . G 6 HOH A 158 558 1175 HOH HOH . G 6 HOH A 159 559 1119 HOH HOH . G 6 HOH A 160 560 1152 HOH HOH . G 6 HOH A 161 561 1090 HOH HOH . G 6 HOH A 162 562 1104 HOH HOH . G 6 HOH A 163 563 1089 HOH HOH . G 6 HOH A 164 564 1095 HOH HOH . G 6 HOH A 165 565 1097 HOH HOH . G 6 HOH A 166 566 1140 HOH HOH . G 6 HOH A 167 567 1159 HOH HOH . G 6 HOH A 168 568 1085 HOH HOH . G 6 HOH A 169 569 1081 HOH HOH . G 6 HOH A 170 570 1123 HOH HOH . G 6 HOH A 171 571 1106 HOH HOH . G 6 HOH A 172 572 1101 HOH HOH . G 6 HOH A 173 573 1130 HOH HOH . G 6 HOH A 174 574 1078 HOH HOH . G 6 HOH A 175 575 1051 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . F 5 9.564 -24.938 -25.721 1 32.37 ? C1 MRD 305 A 1 HETATM 2 C C2 MRD . . . F 5 10.459 -25.211 -24.531 1 47.93 ? C2 MRD 305 A 1 HETATM 3 O O2 MRD . . . F 5 11.456 -26.131 -24.904 1 47.08 ? O2 MRD 305 A 1 HETATM 4 C CM MRD . . . F 5 11.11 -23.909 -24.114 1 42.54 ? CM MRD 305 A 1 HETATM 5 C C3 MRD . . . F 5 9.606 -25.797 -23.42 1 22.73 ? C3 MRD 305 A 1 HETATM 6 C C4 MRD . . . F 5 10.376 -25.965 -22.126 1 35.16 ? C4 MRD 305 A 1 HETATM 7 O O4 MRD . . . F 5 11.492 -26.795 -22.342 1 44.11 ? O4 MRD 305 A 1 HETATM 8 C C5 MRD . . . F 5 9.476 -26.594 -21.087 1 31.73 ? C5 MRD 305 A 1 HETATM 9 H H1C1 MRD . . . F 5 8.806 -24.393 -25.439 1 38.84 ? H1C1 MRD 305 A 1 HETATM 10 H H1C2 MRD . . . F 5 10.071 -24.461 -26.406 1 38.84 ? H1C2 MRD 305 A 1 HETATM 11 H H1C3 MRD . . . F 5 9.24 -25.783 -26.085 1 38.84 ? H1C3 MRD 305 A 1 HETATM 12 H H2 MRD . . . F 5 11.888 -25.826 -25.617 1 56.49 ? H2 MRD 305 A 1 HETATM 13 H HMC1 MRD . . . F 5 10.422 -23.279 -23.825 1 51.05 ? HMC1 MRD 305 A 1 HETATM 14 H HMC2 MRD . . . F 5 11.728 -24.076 -23.377 1 51.05 ? HMC2 MRD 305 A 1 HETATM 15 H HMC3 MRD . . . F 5 11.599 -23.533 -24.87 1 51.05 ? HMC3 MRD 305 A 1 HETATM 16 H H3C1 MRD . . . F 5 9.273 -26.669 -23.704 1 27.27 ? H3C1 MRD 305 A 1 HETATM 17 H H3C2 MRD . . . F 5 8.846 -25.206 -23.26 1 27.27 ? H3C2 MRD 305 A 1 HETATM 18 H H4 MRD . . . F 5 10.677 -25.091 -21.81 1 42.19 ? H4 MRD 305 A 1 HETATM 19 H HA MRD . . . F 5 11.365 -27.574 -21.934 1 52.93 ? HA MRD 305 A 1 HETATM 20 H H5C1 MRD . . . F 5 9.174 -27.467 -21.404 1 38.07 ? H5C1 MRD 305 A 1 HETATM 21 H H5C2 MRD . . . F 5 9.969 -26.704 -20.252 1 38.07 ? H5C2 MRD 305 A 1 HETATM 22 H H5C3 MRD . . . F 5 8.703 -26.018 -20.935 1 38.07 ? H5C3 MRD 305 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #