data_6B6Y # _model_server_result.job_id Ulm_9LjC_Y2zp8R6HsIWlg _model_server_result.datetime_utc '2025-09-04 10:43:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b6y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 6B6Y # _exptl.entry_id 6B6Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.333 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Fe(4)-Ni(1)-S(4) cluster,oxidized' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 75.84 _cell.angle_beta 64.63 _cell.angle_gamma 64.49 _cell.entry_id 6B6Y _cell.length_a 65.19 _cell.length_b 76.12 _cell.length_c 76.11 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B6Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 50 A CYS 42 1_555 F FE2 FES . B FES 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc2 A SG CYS 53 A CYS 45 1_555 F FE2 FES . B FES 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc3 A SG CYS 59 A CYS 51 1_555 C FE1 SF4 . A SF4 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc4 A SG CYS 62 A CYS 54 1_555 C FE4 SF4 . A SF4 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc5 A SG CYS 67 A CYS 59 1_555 C FE2 SF4 . A SF4 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc6 A SG CYS 82 A CYS 74 1_555 C FE3 SF4 . A SF4 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc7 A NE2 HIS 274 A HIS 266 1_555 D NI CUV . A CUV 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc8 A SG CYS 309 A CYS 301 1_555 D FE2 CUV . A CUV 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc9 A SG CYS 310 A CYS 302 1_555 D NI CUV . A CUV 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc10 A SG CYS 348 A CYS 340 1_555 D FE1 CUV . A CUV 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc11 A SG CYS 456 A CYS 448 1_555 D FE3 CUV . A CUV 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc12 A SG CYS 486 A CYS 478 1_555 D FE4 CUV . A CUV 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc13 A SG CYS 527 A CYS 519 1_555 D NI CUV . A CUV 702 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc14 A NZ LYS 564 A LYS 556 1_555 D NI CUV . A CUV 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc15 B SG CYS 50 B CYS 42 1_555 F FE1 FES . B FES 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc16 B SG CYS 53 B CYS 45 1_555 F FE1 FES . B FES 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc17 B SG CYS 59 B CYS 51 1_555 G FE1 SF4 . B SF4 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc18 B SG CYS 62 B CYS 54 1_555 G FE4 SF4 . B SF4 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc19 B SG CYS 67 B CYS 59 1_555 G FE2 SF4 . B SF4 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc20 B SG CYS 82 B CYS 74 1_555 G FE3 SF4 . B SF4 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc21 B NE2 HIS 274 B HIS 266 1_555 H NI CUV . B CUV 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc22 B SG CYS 309 B CYS 301 1_555 H FE2 CUV . B CUV 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc23 B SG CYS 310 B CYS 302 1_555 H NI CUV . B CUV 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc24 B SG CYS 348 B CYS 340 1_555 H FE1 CUV . B CUV 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc25 B SG CYS 456 B CYS 448 1_555 H FE3 CUV . B CUV 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc26 B SG CYS 486 B CYS 478 1_555 H FE4 CUV . B CUV 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc27 B SG CYS 527 B CYS 519 1_555 H NI CUV . B CUV 703 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc28 B NZ LYS 564 B LYS 556 1_555 H NI CUV . B CUV 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? # _chem_comp.formula 'Fe4 Ni S4' _chem_comp.formula_weight 410.333 _chem_comp.id CUV _chem_comp.mon_nstd_flag . _chem_comp.name 'Fe(4)-Ni(1)-S(4) cluster, oxidized' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'C cluster, oxidized' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 FE3 CUV sing 70 n n S1 FE4 CUV sing 71 n n S2 FE1 CUV sing 72 n n S2 FE3 CUV sing 73 n n S2 FE4 CUV sing 74 n n S3 FE2 CUV sing 75 n n S3 FE4 CUV sing 76 n n S4 FE1 CUV sing 77 n n S4 FE3 CUV sing 78 n n FE2 NI CUV sing 79 n n # _atom_sites.entry_id 6B6Y _atom_sites.fract_transf_matrix[1][1] 0.01534 _atom_sites.fract_transf_matrix[1][2] -0.007319 _atom_sites.fract_transf_matrix[1][3] -0.006754 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014556 _atom_sites.fract_transf_matrix[2][3] -0.001075 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014581 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SF4 A 1 701 700 SF4 SF4 . D 3 CUV A 1 702 800 CUV ZCC . E 4 GOL A 1 703 1 GOL GOL . F 5 FES B 1 701 750 FES FES . G 2 SF4 B 1 702 700 SF4 SF4 . H 3 CUV B 1 703 800 CUV ZCC . I 6 HOH A 1 801 81 HOH HOH . I 6 HOH A 2 802 72 HOH HOH . I 6 HOH A 3 803 20 HOH HOH . I 6 HOH A 4 804 90 HOH HOH . I 6 HOH A 5 805 22 HOH HOH . I 6 HOH A 6 806 76 HOH HOH . I 6 HOH A 7 807 39 HOH HOH . I 6 HOH A 8 808 100 HOH HOH . I 6 HOH A 9 809 95 HOH HOH . I 6 HOH A 10 810 25 HOH HOH . I 6 HOH A 11 811 93 HOH HOH . I 6 HOH A 12 812 18 HOH HOH . I 6 HOH A 13 813 36 HOH HOH . I 6 HOH A 14 814 16 HOH HOH . I 6 HOH A 15 815 45 HOH HOH . I 6 HOH A 16 816 85 HOH HOH . I 6 HOH A 17 817 40 HOH HOH . I 6 HOH A 18 818 38 HOH HOH . I 6 HOH A 19 819 2 HOH HOH . I 6 HOH A 20 820 7 HOH HOH . I 6 HOH A 21 821 10 HOH HOH . I 6 HOH A 22 822 11 HOH HOH . I 6 HOH A 23 823 17 HOH HOH . I 6 HOH A 24 824 59 HOH HOH . I 6 HOH A 25 825 24 HOH HOH . I 6 HOH A 26 826 32 HOH HOH . I 6 HOH A 27 827 99 HOH HOH . I 6 HOH A 28 828 58 HOH HOH . I 6 HOH A 29 829 1 HOH HOH . I 6 HOH A 30 830 98 HOH HOH . I 6 HOH A 31 831 77 HOH HOH . I 6 HOH A 32 832 69 HOH HOH . I 6 HOH A 33 833 83 HOH HOH . I 6 HOH A 34 834 96 HOH HOH . I 6 HOH A 35 835 74 HOH HOH . I 6 HOH A 36 836 56 HOH HOH . I 6 HOH A 37 837 92 HOH HOH . I 6 HOH A 38 838 101 HOH HOH . I 6 HOH A 39 839 91 HOH HOH . I 6 HOH A 40 840 5 HOH HOH . I 6 HOH A 41 841 29 HOH HOH . I 6 HOH A 42 842 71 HOH HOH . I 6 HOH A 43 843 65 HOH HOH . I 6 HOH A 44 844 27 HOH HOH . I 6 HOH A 45 845 35 HOH HOH . I 6 HOH A 46 846 54 HOH HOH . I 6 HOH A 47 847 87 HOH HOH . I 6 HOH A 48 848 89 HOH HOH . I 6 HOH A 49 849 4 HOH HOH . I 6 HOH A 50 850 79 HOH HOH . J 6 HOH B 1 801 30 HOH HOH . J 6 HOH B 2 802 37 HOH HOH . J 6 HOH B 3 803 52 HOH HOH . J 6 HOH B 4 804 70 HOH HOH . J 6 HOH B 5 805 61 HOH HOH . J 6 HOH B 6 806 12 HOH HOH . J 6 HOH B 7 807 68 HOH HOH . J 6 HOH B 8 808 28 HOH HOH . J 6 HOH B 9 809 62 HOH HOH . J 6 HOH B 10 810 60 HOH HOH . J 6 HOH B 11 811 86 HOH HOH . J 6 HOH B 12 812 47 HOH HOH . J 6 HOH B 13 813 55 HOH HOH . J 6 HOH B 14 814 97 HOH HOH . J 6 HOH B 15 815 67 HOH HOH . J 6 HOH B 16 816 9 HOH HOH . J 6 HOH B 17 817 82 HOH HOH . J 6 HOH B 18 818 21 HOH HOH . J 6 HOH B 19 819 14 HOH HOH . J 6 HOH B 20 820 43 HOH HOH . J 6 HOH B 21 821 13 HOH HOH . J 6 HOH B 22 822 15 HOH HOH . J 6 HOH B 23 823 6 HOH HOH . J 6 HOH B 24 824 57 HOH HOH . J 6 HOH B 25 825 31 HOH HOH . J 6 HOH B 26 826 33 HOH HOH . J 6 HOH B 27 827 19 HOH HOH . J 6 HOH B 28 828 42 HOH HOH . J 6 HOH B 29 829 66 HOH HOH . J 6 HOH B 30 830 8 HOH HOH . J 6 HOH B 31 831 75 HOH HOH . J 6 HOH B 32 832 41 HOH HOH . J 6 HOH B 33 833 23 HOH HOH . J 6 HOH B 34 834 44 HOH HOH . J 6 HOH B 35 835 48 HOH HOH . J 6 HOH B 36 836 34 HOH HOH . J 6 HOH B 37 837 88 HOH HOH . J 6 HOH B 38 838 49 HOH HOH . J 6 HOH B 39 839 102 HOH HOH . J 6 HOH B 40 840 3 HOH HOH . J 6 HOH B 41 841 73 HOH HOH . J 6 HOH B 42 842 78 HOH HOH . J 6 HOH B 43 843 64 HOH HOH . J 6 HOH B 44 844 63 HOH HOH . J 6 HOH B 45 845 50 HOH HOH . J 6 HOH B 46 846 53 HOH HOH . J 6 HOH B 47 847 46 HOH HOH . J 6 HOH B 48 848 51 HOH HOH . J 6 HOH B 49 849 80 HOH HOH . J 6 HOH B 50 850 84 HOH HOH . J 6 HOH B 51 851 94 HOH HOH . J 6 HOH B 52 852 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 NI NI CUV . . . D 3 4.131 6.344 4.55 0.7 49.51 ? NI CUV 702 A 1 HETATM 2 S S1 CUV . . . D 3 0.362 7.783 7.804 1 75.39 ? S1 CUV 702 A 1 HETATM 3 S S2 CUV . . . D 3 3.819 9.285 8.759 1 119.28 ? S2 CUV 702 A 1 HETATM 4 S S3 CUV . . . D 3 2.683 5.052 8.752 1 118.92 ? S3 CUV 702 A 1 HETATM 5 S S4 CUV . . . D 3 2.856 9.843 5.078 1 67.12 ? S4 CUV 702 A 1 HETATM 6 FE FE1 CUV . . . D 3 4.543 8.756 6.537 1 80.15 ? FE1 CUV 702 A 1 HETATM 7 FE FE2 CUV . . . D 3 4.412 5.81 7.244 1 77.32 ? FE2 CUV 702 A 1 HETATM 8 FE FE3 CUV . . . D 3 1.871 9.658 7.268 1 68.96 ? FE3 CUV 702 A 1 HETATM 9 FE FE4 CUV . . . D 3 2.305 7.389 9.174 1 62.45 ? FE4 CUV 702 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #