data_6B73 # _model_server_result.job_id RGpSg9dZT6LFNr3Ho68y6Q _model_server_result.datetime_utc '2025-07-31 18:36:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b73 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2001}' # _entry.id 6B73 # _exptl.entry_id 6B73 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 554.419 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(5alpha,6beta)-17-(cyclopropylmethyl)-3-hydroxy-7,8-didehydro-4,5-epoxymorphinan-6-yl]-3-iodobenzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.66 _cell.angle_gamma 90 _cell.entry_id 6B73 _cell.length_a 62.31 _cell.length_b 150.75 _cell.length_c 100.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B73 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G 1 1 B,C,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 191 A CYS 131 1_555 A SG CYS 270 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 191 B CYS 131 1_555 B SG CYS 270 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 C SG CYS 24 C CYS 24 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 D SG CYS 24 D CYS 24 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C27 H27 I N2 O3' _chem_comp.formula_weight 554.419 _chem_comp.id CVV _chem_comp.mon_nstd_flag . _chem_comp.name N-[(5alpha,6beta)-17-(cyclopropylmethyl)-3-hydroxy-7,8-didehydro-4,5-epoxymorphinan-6-yl]-3-iodobenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C14 CVV doub 147 n y C15 C10 CVV sing 148 n y C14 C13 CVV sing 149 n y O2 C9 CVV doub 150 n n C9 C10 CVV sing 151 n n C9 N1 CVV sing 152 n n C10 C11 CVV doub 153 n y C13 C12 CVV doub 154 n y N1 C8 CVV sing 155 n n C8 C7 CVV sing 156 n n C8 C16 CVV sing 157 n n C11 C12 CVV sing 158 n y C12 I1 CVV sing 159 n n C7 C6 CVV doub 160 n n O4 C20 CVV sing 161 n n O3 C16 CVV sing 162 n n O3 C19 CVV sing 163 n n C16 C17 CVV sing 164 n n C20 C19 CVV doub 165 n y C20 C21 CVV sing 166 n y C19 C18 CVV sing 167 n y C6 C5 CVV sing 168 n n C17 C18 CVV sing 169 n n C17 C5 CVV sing 170 n n C17 C22 CVV sing 171 n n C21 C1 CVV doub 172 n y C18 C2 CVV doub 173 n y C5 C4 CVV sing 174 n n C22 C23 CVV sing 175 n n C1 C2 CVV sing 176 n y C2 C3 CVV sing 177 n n C4 C3 CVV sing 178 n n C4 N2 CVV sing 179 n n C23 N2 CVV sing 180 n n N2 C24 CVV sing 181 n n C24 C25 CVV sing 182 n n C25 C26 CVV sing 183 n n C25 C27 CVV sing 184 n n C26 C27 CVV sing 185 n n N1 H1 CVV sing 186 n n C4 H2 CVV sing 187 n n C5 H3 CVV sing 188 n n C6 H4 CVV sing 189 n n C7 H5 CVV sing 190 n n C8 H6 CVV sing 191 n n C13 H7 CVV sing 192 n n C15 H8 CVV sing 193 n n C21 H9 CVV sing 194 n n C22 H10 CVV sing 195 n n C22 H11 CVV sing 196 n n C24 H12 CVV sing 197 n n C24 H13 CVV sing 198 n n C26 H14 CVV sing 199 n n C26 H15 CVV sing 200 n n C1 H16 CVV sing 201 n n C11 H17 CVV sing 202 n n C14 H18 CVV sing 203 n n C16 H19 CVV sing 204 n n C23 H21 CVV sing 205 n n C23 H22 CVV sing 206 n n C25 H23 CVV sing 207 n n C27 H24 CVV sing 208 n n C27 H25 CVV sing 209 n n C3 H26 CVV sing 210 n n C3 H27 CVV sing 211 n n O4 H28 CVV sing 212 n n # _atom_sites.entry_id 6B73 _atom_sites.fract_transf_matrix[1][1] 0.016049 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004499 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CVV A 1 2001 2001 CVV LIG . F 4 CLR A 1 2002 2003 CLR CLR . G 5 OLA A 1 2003 2004 OLA OLA . H 3 CVV B 1 2001 2001 CVV LIG . I 4 CLR B 1 2002 2003 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CVV . . . E 3 59.56 -25.364 -7.3 1 82.36 ? N1 CVV 2001 A 1 HETATM 2 C C4 CVV . . . E 3 61.519 -24.436 -2.92 1 74.01 ? C4 CVV 2001 A 1 HETATM 3 C C5 CVV . . . E 3 60.985 -24.579 -4.351 1 75.77 ? C5 CVV 2001 A 1 HETATM 4 C C6 CVV . . . E 3 62.112 -24.64 -5.37 1 76.17 ? C6 CVV 2001 A 1 HETATM 5 C C7 CVV . . . E 3 61.788 -24.441 -6.659 1 77.23 ? C7 CVV 2001 A 1 HETATM 6 C C8 CVV . . . E 3 60.351 -24.114 -7.105 1 79.12 ? C8 CVV 2001 A 1 HETATM 7 C C10 CVV . . . E 3 58.992 -27.466 -8.153 1 90.28 ? C10 CVV 2001 A 1 HETATM 8 C C13 CVV . . . E 3 57.529 -29.877 -7.926 1 93.76 ? C13 CVV 2001 A 1 HETATM 9 C C15 CVV . . . E 3 58.57 -28.163 -9.294 1 91.29 ? C15 CVV 2001 A 1 HETATM 10 C C17 CVV . . . E 3 60.086 -23.362 -4.608 1 76.29 ? C17 CVV 2001 A 1 HETATM 11 C C20 CVV . . . E 3 61.373 -20.139 -5.496 1 78.37 ? C20 CVV 2001 A 1 HETATM 12 C C21 CVV . . . E 3 62.366 -19.85 -4.549 1 77.29 ? C21 CVV 2001 A 1 HETATM 13 C C22 CVV . . . E 3 58.88 -23.445 -3.667 1 73.34 ? C22 CVV 2001 A 1 HETATM 14 C C24 CVV . . . E 3 60.744 -24.744 -0.6 1 68.66 ? C24 CVV 2001 A 1 HETATM 15 C C26 CVV . . . E 3 63.011 -25.899 -0.109 1 66.2 ? C26 CVV 2001 A 1 HETATM 16 I I1 CVV . . . E 3 57.569 -29.947 -4.835 1 98.78 ? I1 CVV 2001 A 1 HETATM 17 C C1 CVV . . . E 3 62.661 -20.784 -3.55 1 76.27 ? C1 CVV 2001 A 1 HETATM 18 C C11 CVV . . . E 3 58.704 -28.02 -6.901 1 93.84 ? C11 CVV 2001 A 1 HETATM 19 C C12 CVV . . . E 3 57.973 -29.209 -6.775 1 95.93 ? C12 CVV 2001 A 1 HETATM 20 C C14 CVV . . . E 3 57.826 -29.348 -9.186 1 92.14 ? C14 CVV 2001 A 1 HETATM 21 C C16 CVV . . . E 3 59.59 -23.209 -6.054 1 77.98 ? C16 CVV 2001 A 1 HETATM 22 C C18 CVV . . . E 3 60.908 -22.12 -4.441 1 77.34 ? C18 CVV 2001 A 1 HETATM 23 C C19 CVV . . . E 3 60.67 -21.283 -5.464 1 78.26 ? C19 CVV 2001 A 1 HETATM 24 O O2 CVV . . . E 3 60.722 -26.279 -9.054 1 85.52 ? O2 CVV 2001 A 1 HETATM 25 C C2 CVV . . . E 3 61.926 -21.97 -3.549 1 76.2 ? C2 CVV 2001 A 1 HETATM 26 N N2 CVV . . . E 3 60.331 -24.643 -2.042 1 71.51 ? N2 CVV 2001 A 1 HETATM 27 C C23 CVV . . . E 3 59.338 -23.554 -2.207 1 71.97 ? C23 CVV 2001 A 1 HETATM 28 C C25 CVV . . . E 3 61.498 -26.034 -0.273 1 67.05 ? C25 CVV 2001 A 1 HETATM 29 C C27 CVV . . . E 3 62.116 -26.038 1.103 1 67.13 ? C27 CVV 2001 A 1 HETATM 30 O O3 CVV . . . E 3 59.707 -21.766 -6.316 1 78.62 ? O3 CVV 2001 A 1 HETATM 31 C C3 CVV . . . E 3 62.228 -23.06 -2.569 1 74.76 ? C3 CVV 2001 A 1 HETATM 32 O O4 CVV . . . E 3 61.05 -19.263 -6.485 1 79.66 ? O4 CVV 2001 A 1 HETATM 33 C C9 CVV . . . E 3 59.792 -26.317 -8.243 1 85.84 ? C9 CVV 2001 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #