data_6B74
#
_model_server_result.job_id            FmMUZqcj8niRB1G0qsgoaQ 
_model_server_result.datetime_utc      '2024-12-25 05:24:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6b74 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":308}' 
#
_entry.id    6B74 
#
_exptl.entry_id    6B74 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6B74 
_cell.length_a            80.289 
_cell.length_b            80.289 
_cell.length_c            121.731 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6B74 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        80 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    3 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   3 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n C NAG 1 C 1 NAG B 301 NAG 
3 n C NAG 2 C 2 NAG B 302 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 340 1_555 B SG CYS 114 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 25 B CYS 42 1_555 B SG CYS 41 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 B SG CYS 33 B CYS 50 1_555 B SG CYS 103 B CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 B SG CYS 64 B CYS 77 1_555 B SG CYS 67 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 B SG CYS 128 B CYS 136 1_555 B SG CYS 197 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 B SG CYS 160 B CYS 168 1_555 B SG CYS 176 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 B SG CYS 187 B CYS 191 1_555 B SG CYS 218 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 B ND2 ASN 61 B ASN 74 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale2 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 sing 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 146 n n 
C1 C2 GOL sing 147 n n 
C1 H11 GOL sing 148 n n 
C1 H12 GOL sing 149 n n 
O1 HO1 GOL sing 150 n n 
C2 O2 GOL sing 151 n n 
C2 C3 GOL sing 152 n n 
C2 H2 GOL sing 153 n n 
O2 HO2 GOL sing 154 n n 
C3 O3 GOL sing 155 n n 
C3 H31 GOL sing 156 n n 
C3 H32 GOL sing 157 n n 
O3 HO3 GOL sing 158 n n 
#
_atom_sites.entry_id                     6B74 
_atom_sites.fract_transf_matrix[1][1]    0.012455 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012455 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008215 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 BEN B 1 301 251 BEN BEN . 
E 5 IOD B 1 302 252 IOD IOD . 
F 5 IOD B 1 303 253 IOD IOD . 
G 6 SO4 B 1 304 254 SO4 SO4 . 
H 6 SO4 B 1 305 255 SO4 SO4 . 
I 6 SO4 B 1 306 256 SO4 SO4 . 
J 6 SO4 B 1 307 257 SO4 SO4 . 
K 7 GOL B 1 308 258 GOL GOL . 
L 8 HOH B 1 401 36 HOH HOH . 
L 8 HOH B 2 402 22 HOH HOH . 
L 8 HOH B 3 403 41 HOH HOH . 
L 8 HOH B 4 404 35 HOH HOH . 
L 8 HOH B 5 405 44 HOH HOH . 
L 8 HOH B 6 406 13 HOH HOH . 
L 8 HOH B 7 407 15 HOH HOH . 
L 8 HOH B 8 408 33 HOH HOH . 
L 8 HOH B 9 409 28 HOH HOH . 
L 8 HOH B 10 410 40 HOH HOH . 
L 8 HOH B 11 411 7 HOH HOH . 
L 8 HOH B 12 412 8 HOH HOH . 
L 8 HOH B 13 413 30 HOH HOH . 
L 8 HOH B 14 414 29 HOH HOH . 
L 8 HOH B 15 415 27 HOH HOH . 
L 8 HOH B 16 416 32 HOH HOH . 
L 8 HOH B 17 417 25 HOH HOH . 
L 8 HOH B 18 418 5 HOH HOH . 
L 8 HOH B 19 419 10 HOH HOH . 
L 8 HOH B 20 420 49 HOH HOH . 
L 8 HOH B 21 421 51 HOH HOH . 
L 8 HOH B 22 422 24 HOH HOH . 
L 8 HOH B 23 423 2 HOH HOH . 
L 8 HOH B 24 424 18 HOH HOH . 
L 8 HOH B 25 425 16 HOH HOH . 
L 8 HOH B 26 426 23 HOH HOH . 
L 8 HOH B 27 427 45 HOH HOH . 
L 8 HOH B 28 428 4 HOH HOH . 
L 8 HOH B 29 429 20 HOH HOH . 
L 8 HOH B 30 430 9 HOH HOH . 
L 8 HOH B 31 431 31 HOH HOH . 
L 8 HOH B 32 432 19 HOH HOH . 
L 8 HOH B 33 433 3 HOH HOH . 
L 8 HOH B 34 434 43 HOH HOH . 
L 8 HOH B 35 435 46 HOH HOH . 
L 8 HOH B 36 436 12 HOH HOH . 
L 8 HOH B 37 437 50 HOH HOH . 
L 8 HOH B 38 438 1 HOH HOH . 
L 8 HOH B 39 439 48 HOH HOH . 
L 8 HOH B 40 440 37 HOH HOH . 
L 8 HOH B 41 441 6 HOH HOH . 
L 8 HOH B 42 442 38 HOH HOH . 
L 8 HOH B 43 443 47 HOH HOH . 
L 8 HOH B 44 444 21 HOH HOH . 
L 8 HOH B 45 445 14 HOH HOH . 
L 8 HOH B 46 446 34 HOH HOH . 
L 8 HOH B 47 447 42 HOH HOH . 
L 8 HOH B 48 448 39 HOH HOH . 
L 8 HOH B 49 449 11 HOH HOH . 
L 8 HOH B 50 450 17 HOH HOH . 
L 8 HOH B 51 451 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 7 75.528 -11.768 34.231 1 96.11 ? C1 GOL 308 B 1 
HETATM 2 O O1 GOL . . . K 7 76.351 -10.641 34.442 1 98.12 ? O1 GOL 308 B 1 
HETATM 3 C C2 GOL . . . K 7 74.805 -12.124 35.526 1 107.86 ? C2 GOL 308 B 1 
HETATM 4 O O2 GOL . . . K 7 75.064 -11.14 36.499 1 110.45 ? O2 GOL 308 B 1 
HETATM 5 C C3 GOL . . . K 7 73.305 -12.211 35.268 1 76.57 ? C3 GOL 308 B 1 
HETATM 6 O O3 GOL . . . K 7 72.597 -12.126 36.485 1 91.21 ? O3 GOL 308 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#