data_6B7H # _model_server_result.job_id VHAuNTwb46MtZEu1oN2uGA _model_server_result.datetime_utc '2025-07-08 00:14:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b7h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":805}' # _entry.id 6B7H # _exptl.entry_id 6B7H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6B7H _cell.length_a 80.081 _cell.length_b 80.081 _cell.length_c 161.887 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B7H _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 801 NAG 2 n B NAG 2 B 2 NAG A 804 NAG 2 n C NAG 1 C 1 NAG A 802 NAG 2 n C NAG 2 C 2 NAG A 805 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 59 A CYS 57 1_555 A SG CYS 101 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 363 A CYS 361 1_555 A SG CYS 375 A CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 414 A CYS 412 1_555 A SG CYS 421 A CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A ND2 ASN 211 A ASN 209 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 A ND2 ASN 240 A ASN 238 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 A ND2 ASN 416 A ASN 414 1_555 D C1 NAG . A NAG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? metalc ? metalc1 A O ILE 81 A ILE 79 1_555 F CA CA . A CA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc2 A O LEU 87 A LEU 85 1_555 F CA CA . A CA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.167 ? metalc ? metalc3 A O LEU 88 A LEU 86 1_555 F CA CA . A CA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 281 n n C1 O1 NAG sing 282 n n C1 O5 NAG sing 283 n n C1 H1 NAG sing 284 n n C2 C3 NAG sing 285 n n C2 N2 NAG sing 286 n n C2 H2 NAG sing 287 n n C3 C4 NAG sing 288 n n C3 O3 NAG sing 289 n n C3 H3 NAG sing 290 n n C4 C5 NAG sing 291 n n C4 O4 NAG sing 292 n n C4 H4 NAG sing 293 n n C5 C6 NAG sing 294 n n C5 O5 NAG sing 295 n n C5 H5 NAG sing 296 n n C6 O6 NAG sing 297 n n C6 H61 NAG sing 298 n n C6 H62 NAG sing 299 n n C7 C8 NAG sing 300 n n C7 N2 NAG sing 301 n n C7 O7 NAG doub 302 n n C8 H81 NAG sing 303 n n C8 H82 NAG sing 304 n n C8 H83 NAG sing 305 n n N2 HN2 NAG sing 306 n n O1 HO1 NAG sing 307 n n O3 HO3 NAG sing 308 n n O4 HO4 NAG sing 309 n n O6 HO6 NAG sing 310 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6B7H _atom_sites.fract_transf_matrix[1][1] 0.012487 _atom_sites.fract_transf_matrix[1][2] 0.00721 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014419 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG A 1 805 803 NAG NAG . E 4 CWY A 1 806 1 CWY SX1 . F 5 CA A 1 807 1 CA CA . G 6 HOH A 1 901 172 HOH HOH . G 6 HOH A 2 902 171 HOH HOH . G 6 HOH A 3 903 180 HOH HOH . G 6 HOH A 4 904 197 HOH HOH . G 6 HOH A 5 905 199 HOH HOH . G 6 HOH A 6 906 36 HOH HOH . G 6 HOH A 7 907 1 HOH HOH . G 6 HOH A 8 908 35 HOH HOH . G 6 HOH A 9 909 28 HOH HOH . G 6 HOH A 10 910 179 HOH HOH . G 6 HOH A 11 911 8 HOH HOH . G 6 HOH A 12 912 15 HOH HOH . G 6 HOH A 13 913 198 HOH HOH . G 6 HOH A 14 914 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 25.298 110.674 -15.449 1 125.99 ? C1 NAG 805 A 1 HETATM 2 C C2 NAG . . . D 3 24.254 111.106 -16.482 1 126.18 ? C2 NAG 805 A 1 HETATM 3 C C3 NAG . . . D 3 24.762 110.81 -17.892 1 131.43 ? C3 NAG 805 A 1 HETATM 4 C C4 NAG . . . D 3 26.1 111.5 -18.13 1 136.48 ? C4 NAG 805 A 1 HETATM 5 C C5 NAG . . . D 3 27.122 111.094 -17.065 1 134.33 ? C5 NAG 805 A 1 HETATM 6 C C6 NAG . . . D 3 28.4 111.917 -17.133 1 135.59 ? C6 NAG 805 A 1 HETATM 7 C C7 NAG . . . D 3 21.827 111.255 -16.06 1 118.1 ? C7 NAG 805 A 1 HETATM 8 C C8 NAG . . . D 3 20.518 110.551 -16.266 1 114.76 ? C8 NAG 805 A 1 HETATM 9 N N2 NAG . . . D 3 22.933 110.523 -16.286 1 119.89 ? N2 NAG 805 A 1 HETATM 10 O O3 NAG . . . D 3 23.801 111.277 -18.836 1 131.5 ? O3 NAG 805 A 1 HETATM 11 O O4 NAG . . . D 3 26.582 111.192 -19.437 1 142.49 ? O4 NAG 805 A 1 HETATM 12 O O5 NAG . . . D 3 26.578 111.275 -15.738 1 129.49 ? O5 NAG 805 A 1 HETATM 13 O O6 NAG . . . D 3 29.574 111.141 -16.918 1 134.24 ? O6 NAG 805 A 1 HETATM 14 O O7 NAG . . . D 3 21.881 112.435 -15.726 1 118.91 ? O7 NAG 805 A 1 # _model_server_stats.io_time_ms 194 _model_server_stats.parse_time_ms 116 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #