data_6B7I # _model_server_result.job_id y6KOdlGky1U_f39J1gmBcw _model_server_result.datetime_utc '2024-10-19 21:27:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b7i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6B7I # _exptl.entry_id 6B7I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6B7I _cell.length_a 99.96 _cell.length_b 99.96 _cell.length_c 99.96 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B7I _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_456 z-1/2,-x+1/2,-y+1 0 0 1 -1 0 0 0 -1 0 -49.98 49.98 99.96 3 'crystal symmetry operation' 12_565 -y+1/2,-z+1,x+1/2 0 -1 0 0 0 -1 1 0 0 49.98 99.96 49.98 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 32 A ILE 32 1_555 A N CME 33 A CME 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CME 33 A CME 33 1_555 A N GLY 34 A GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 123 n n S C1 DMS sing 124 n n S C2 DMS sing 125 n n C1 H11 DMS sing 126 n n C1 H12 DMS sing 127 n n C1 H13 DMS sing 128 n n C2 H21 DMS sing 129 n n C2 H22 DMS sing 130 n n C2 H23 DMS sing 131 n n # _atom_sites.entry_id 6B7I _atom_sites.fract_transf_matrix[1][1] 0.010004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010004 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 301 1 DMS DMS . C 2 DMS A 1 302 2 DMS DMS . D 2 DMS A 1 303 3 DMS DMS . E 2 DMS A 1 304 4 DMS DMS . F 2 DMS A 1 305 5 DMS DMS . G 2 DMS A 1 306 8 DMS DMS . H 2 DMS A 1 307 9 DMS DMS . I 3 CXJ A 1 308 1 CXJ FRG . J 4 HOH A 1 401 115 HOH HOH . J 4 HOH A 2 402 175 HOH HOH . J 4 HOH A 3 403 148 HOH HOH . J 4 HOH A 4 404 153 HOH HOH . J 4 HOH A 5 405 150 HOH HOH . J 4 HOH A 6 406 119 HOH HOH . J 4 HOH A 7 407 224 HOH HOH . J 4 HOH A 8 408 197 HOH HOH . J 4 HOH A 9 409 167 HOH HOH . J 4 HOH A 10 410 214 HOH HOH . J 4 HOH A 11 411 42 HOH HOH . J 4 HOH A 12 412 105 HOH HOH . J 4 HOH A 13 413 161 HOH HOH . J 4 HOH A 14 414 229 HOH HOH . J 4 HOH A 15 415 174 HOH HOH . J 4 HOH A 16 416 171 HOH HOH . J 4 HOH A 17 417 228 HOH HOH . J 4 HOH A 18 418 127 HOH HOH . J 4 HOH A 19 419 177 HOH HOH . J 4 HOH A 20 420 140 HOH HOH . J 4 HOH A 21 421 44 HOH HOH . J 4 HOH A 22 422 94 HOH HOH . J 4 HOH A 23 423 71 HOH HOH . J 4 HOH A 24 424 248 HOH HOH . J 4 HOH A 25 425 147 HOH HOH . J 4 HOH A 26 426 22 HOH HOH . J 4 HOH A 27 427 88 HOH HOH . J 4 HOH A 28 428 79 HOH HOH . J 4 HOH A 29 429 48 HOH HOH . J 4 HOH A 30 430 163 HOH HOH . J 4 HOH A 31 431 17 HOH HOH . J 4 HOH A 32 432 220 HOH HOH . J 4 HOH A 33 433 183 HOH HOH . J 4 HOH A 34 434 60 HOH HOH . J 4 HOH A 35 435 29 HOH HOH . J 4 HOH A 36 436 109 HOH HOH . J 4 HOH A 37 437 137 HOH HOH . J 4 HOH A 38 438 149 HOH HOH . J 4 HOH A 39 439 206 HOH HOH . J 4 HOH A 40 440 6 HOH HOH . J 4 HOH A 41 441 2 HOH HOH . J 4 HOH A 42 442 7 HOH HOH . J 4 HOH A 43 443 50 HOH HOH . J 4 HOH A 44 444 77 HOH HOH . J 4 HOH A 45 445 120 HOH HOH . J 4 HOH A 46 446 20 HOH HOH . J 4 HOH A 47 447 202 HOH HOH . J 4 HOH A 48 448 242 HOH HOH . J 4 HOH A 49 449 111 HOH HOH . J 4 HOH A 50 450 86 HOH HOH . J 4 HOH A 51 451 72 HOH HOH . J 4 HOH A 52 452 128 HOH HOH . J 4 HOH A 53 453 4 HOH HOH . J 4 HOH A 54 454 58 HOH HOH . J 4 HOH A 55 455 27 HOH HOH . J 4 HOH A 56 456 75 HOH HOH . J 4 HOH A 57 457 130 HOH HOH . J 4 HOH A 58 458 200 HOH HOH . J 4 HOH A 59 459 98 HOH HOH . J 4 HOH A 60 460 101 HOH HOH . J 4 HOH A 61 461 97 HOH HOH . J 4 HOH A 62 462 192 HOH HOH . J 4 HOH A 63 463 178 HOH HOH . J 4 HOH A 64 464 53 HOH HOH . J 4 HOH A 65 465 246 HOH HOH . J 4 HOH A 66 466 89 HOH HOH . J 4 HOH A 67 467 216 HOH HOH . J 4 HOH A 68 468 14 HOH HOH . J 4 HOH A 69 469 1 HOH HOH . J 4 HOH A 70 470 28 HOH HOH . J 4 HOH A 71 471 25 HOH HOH . J 4 HOH A 72 472 43 HOH HOH . J 4 HOH A 73 473 132 HOH HOH . J 4 HOH A 74 474 179 HOH HOH . J 4 HOH A 75 475 96 HOH HOH . J 4 HOH A 76 476 26 HOH HOH . J 4 HOH A 77 477 47 HOH HOH . J 4 HOH A 78 478 121 HOH HOH . J 4 HOH A 79 479 56 HOH HOH . J 4 HOH A 80 480 245 HOH HOH . J 4 HOH A 81 481 9 HOH HOH . J 4 HOH A 82 482 54 HOH HOH . J 4 HOH A 83 483 63 HOH HOH . J 4 HOH A 84 484 215 HOH HOH . J 4 HOH A 85 485 198 HOH HOH . J 4 HOH A 86 486 3 HOH HOH . J 4 HOH A 87 487 64 HOH HOH . J 4 HOH A 88 488 68 HOH HOH . J 4 HOH A 89 489 104 HOH HOH . J 4 HOH A 90 490 18 HOH HOH . J 4 HOH A 91 491 78 HOH HOH . J 4 HOH A 92 492 169 HOH HOH . J 4 HOH A 93 493 11 HOH HOH . J 4 HOH A 94 494 99 HOH HOH . J 4 HOH A 95 495 69 HOH HOH . J 4 HOH A 96 496 93 HOH HOH . J 4 HOH A 97 497 8 HOH HOH . J 4 HOH A 98 498 40 HOH HOH . J 4 HOH A 99 499 16 HOH HOH . J 4 HOH A 100 500 90 HOH HOH . J 4 HOH A 101 501 70 HOH HOH . J 4 HOH A 102 502 225 HOH HOH . J 4 HOH A 103 503 160 HOH HOH . J 4 HOH A 104 504 24 HOH HOH . J 4 HOH A 105 505 5 HOH HOH . J 4 HOH A 106 506 38 HOH HOH . J 4 HOH A 107 507 57 HOH HOH . J 4 HOH A 108 508 205 HOH HOH . J 4 HOH A 109 509 55 HOH HOH . J 4 HOH A 110 510 91 HOH HOH . J 4 HOH A 111 511 103 HOH HOH . J 4 HOH A 112 512 36 HOH HOH . J 4 HOH A 113 513 207 HOH HOH . J 4 HOH A 114 514 170 HOH HOH . J 4 HOH A 115 515 210 HOH HOH . J 4 HOH A 116 516 51 HOH HOH . J 4 HOH A 117 517 181 HOH HOH . J 4 HOH A 118 518 76 HOH HOH . J 4 HOH A 119 519 203 HOH HOH . J 4 HOH A 120 520 19 HOH HOH . J 4 HOH A 121 521 66 HOH HOH . J 4 HOH A 122 522 49 HOH HOH . J 4 HOH A 123 523 196 HOH HOH . J 4 HOH A 124 524 13 HOH HOH . J 4 HOH A 125 525 10 HOH HOH . J 4 HOH A 126 526 164 HOH HOH . J 4 HOH A 127 527 31 HOH HOH . J 4 HOH A 128 528 142 HOH HOH . J 4 HOH A 129 529 152 HOH HOH . J 4 HOH A 130 530 34 HOH HOH . J 4 HOH A 131 531 67 HOH HOH . J 4 HOH A 132 532 52 HOH HOH . J 4 HOH A 133 533 23 HOH HOH . J 4 HOH A 134 534 154 HOH HOH . J 4 HOH A 135 535 45 HOH HOH . J 4 HOH A 136 536 92 HOH HOH . J 4 HOH A 137 537 59 HOH HOH . J 4 HOH A 138 538 156 HOH HOH . J 4 HOH A 139 539 21 HOH HOH . J 4 HOH A 140 540 65 HOH HOH . J 4 HOH A 141 541 62 HOH HOH . J 4 HOH A 142 542 12 HOH HOH . J 4 HOH A 143 543 107 HOH HOH . J 4 HOH A 144 544 85 HOH HOH . J 4 HOH A 145 545 30 HOH HOH . J 4 HOH A 146 546 80 HOH HOH . J 4 HOH A 147 547 35 HOH HOH . J 4 HOH A 148 548 73 HOH HOH . J 4 HOH A 149 549 82 HOH HOH . J 4 HOH A 150 550 39 HOH HOH . J 4 HOH A 151 551 87 HOH HOH . J 4 HOH A 152 552 15 HOH HOH . J 4 HOH A 153 553 61 HOH HOH . J 4 HOH A 154 554 116 HOH HOH . J 4 HOH A 155 555 84 HOH HOH . J 4 HOH A 156 556 37 HOH HOH . J 4 HOH A 157 557 95 HOH HOH . J 4 HOH A 158 558 74 HOH HOH . J 4 HOH A 159 559 83 HOH HOH . J 4 HOH A 160 560 185 HOH HOH . J 4 HOH A 161 561 100 HOH HOH . J 4 HOH A 162 562 237 HOH HOH . J 4 HOH A 163 563 114 HOH HOH . J 4 HOH A 164 564 208 HOH HOH . J 4 HOH A 165 565 81 HOH HOH . J 4 HOH A 166 566 162 HOH HOH . J 4 HOH A 167 567 102 HOH HOH . J 4 HOH A 168 568 213 HOH HOH . J 4 HOH A 169 569 113 HOH HOH . J 4 HOH A 170 570 143 HOH HOH . J 4 HOH A 171 571 146 HOH HOH . J 4 HOH A 172 572 106 HOH HOH . J 4 HOH A 173 573 199 HOH HOH . J 4 HOH A 174 574 217 HOH HOH . J 4 HOH A 175 575 189 HOH HOH . J 4 HOH A 176 576 124 HOH HOH . J 4 HOH A 177 577 172 HOH HOH . J 4 HOH A 178 578 129 HOH HOH . J 4 HOH A 179 579 118 HOH HOH . J 4 HOH A 180 580 108 HOH HOH . J 4 HOH A 181 581 33 HOH HOH . J 4 HOH A 182 582 247 HOH HOH . J 4 HOH A 183 583 218 HOH HOH . J 4 HOH A 184 584 138 HOH HOH . J 4 HOH A 185 585 191 HOH HOH . J 4 HOH A 186 586 232 HOH HOH . J 4 HOH A 187 587 112 HOH HOH . J 4 HOH A 188 588 133 HOH HOH . J 4 HOH A 189 589 243 HOH HOH . J 4 HOH A 190 590 139 HOH HOH . J 4 HOH A 191 591 144 HOH HOH . J 4 HOH A 192 592 126 HOH HOH . J 4 HOH A 193 593 135 HOH HOH . J 4 HOH A 194 594 131 HOH HOH . J 4 HOH A 195 595 151 HOH HOH . J 4 HOH A 196 596 194 HOH HOH . J 4 HOH A 197 597 141 HOH HOH . J 4 HOH A 198 598 209 HOH HOH . J 4 HOH A 199 599 110 HOH HOH . J 4 HOH A 200 600 122 HOH HOH . J 4 HOH A 201 601 241 HOH HOH . J 4 HOH A 202 602 125 HOH HOH . J 4 HOH A 203 603 221 HOH HOH . J 4 HOH A 204 604 117 HOH HOH . J 4 HOH A 205 605 134 HOH HOH . J 4 HOH A 206 606 234 HOH HOH . J 4 HOH A 207 607 240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 2 23.033 32.299 42.793 1 31.85 ? S DMS 302 A 1 HETATM 2 O O DMS . . . C 2 23.685 33.661 42.974 1 29.51 ? O DMS 302 A 1 HETATM 3 C C1 DMS . . . C 2 22.351 32.368 41.115 1 34.66 ? C1 DMS 302 A 1 HETATM 4 C C2 DMS . . . C 2 24.273 30.995 42.652 1 31.5 ? C2 DMS 302 A 1 HETATM 5 H H11 DMS . . . C 2 21.588 33.102 41.074 1 41.59 ? H11 DMS 302 A 1 HETATM 6 H H12 DMS . . . C 2 21.946 31.423 40.859 1 41.59 ? H12 DMS 302 A 1 HETATM 7 H H13 DMS . . . C 2 23.12 32.619 40.432 1 41.59 ? H13 DMS 302 A 1 HETATM 8 H H21 DMS . . . C 2 24.946 31.231 41.869 1 37.8 ? H21 DMS 302 A 1 HETATM 9 H H22 DMS . . . C 2 23.795 30.074 42.44 1 37.8 ? H22 DMS 302 A 1 HETATM 10 H H23 DMS . . . C 2 24.806 30.914 43.564 1 37.8 ? H23 DMS 302 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #