data_6B82
#
_model_server_result.job_id            xPpmcwwq1PVNyJyXvF5SOw 
_model_server_result.datetime_utc      '2024-11-25 06:22:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6b82 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    6B82 
#
_exptl.entry_id    6B82 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6B82 
_cell.length_a            104.92 
_cell.length_b            104.92 
_cell.length_c            235 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6B82 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 130 A CYS 146 1_555 B SG CYS 130 B CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
disulf ? disulf2 A SG CYS 421 A CYS 437 1_555 B SG CYS 421 B CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc1 A SG CYS 437 A CYS 453 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc2 C FE HEM . A HEM 601 1_555 D N22 AER . A AER 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc3 B SG CYS 437 B CYS 453 1_555 F FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc4 F FE HEM . B HEM 601 1_555 G N22 AER . B AER 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 196 n n 
CHA C4D HEM doub 197 n n 
CHA HHA HEM sing 198 n n 
CHB C4A HEM sing 199 n n 
CHB C1B HEM doub 200 n n 
CHB HHB HEM sing 201 n n 
CHC C4B HEM sing 202 n n 
CHC C1C HEM doub 203 n n 
CHC HHC HEM sing 204 n n 
CHD C4C HEM doub 205 n n 
CHD C1D HEM sing 206 n n 
CHD HHD HEM sing 207 n n 
C1A C2A HEM doub 208 n y 
C1A NA HEM sing 209 n y 
C2A C3A HEM sing 210 n y 
C2A CAA HEM sing 211 n n 
C3A C4A HEM doub 212 n y 
C3A CMA HEM sing 213 n n 
C4A NA HEM sing 214 n y 
CMA HMA HEM sing 215 n n 
CMA HMAA HEM sing 216 n n 
CMA HMAB HEM sing 217 n n 
CAA CBA HEM sing 218 n n 
CAA HAA HEM sing 219 n n 
CAA HAAA HEM sing 220 n n 
CBA CGA HEM sing 221 n n 
CBA HBA HEM sing 222 n n 
CBA HBAA HEM sing 223 n n 
CGA O1A HEM doub 224 n n 
CGA O2A HEM sing 225 n n 
C1B C2B HEM sing 226 n n 
C1B NB HEM sing 227 n n 
C2B C3B HEM doub 228 n n 
C2B CMB HEM sing 229 n n 
C3B C4B HEM sing 230 n n 
C3B CAB HEM sing 231 n n 
C4B NB HEM doub 232 n n 
CMB HMB HEM sing 233 n n 
CMB HMBA HEM sing 234 n n 
CMB HMBB HEM sing 235 n n 
CAB CBB HEM doub 236 n n 
CAB HAB HEM sing 237 n n 
CBB HBB HEM sing 238 n n 
CBB HBBA HEM sing 239 n n 
C1C C2C HEM sing 240 n y 
C1C NC HEM sing 241 n y 
C2C C3C HEM doub 242 n y 
C2C CMC HEM sing 243 n n 
C3C C4C HEM sing 244 n y 
C3C CAC HEM sing 245 n n 
C4C NC HEM sing 246 n y 
CMC HMC HEM sing 247 n n 
CMC HMCA HEM sing 248 n n 
CMC HMCB HEM sing 249 n n 
CAC CBC HEM doub 250 n n 
CAC HAC HEM sing 251 n n 
CBC HBC HEM sing 252 n n 
CBC HBCA HEM sing 253 n n 
C1D C2D HEM sing 254 n n 
C1D ND HEM doub 255 n n 
C2D C3D HEM doub 256 n n 
C2D CMD HEM sing 257 n n 
C3D C4D HEM sing 258 n n 
C3D CAD HEM sing 259 n n 
C4D ND HEM sing 260 n n 
CMD HMD HEM sing 261 n n 
CMD HMDA HEM sing 262 n n 
CMD HMDB HEM sing 263 n n 
CAD CBD HEM sing 264 n n 
CAD HAD HEM sing 265 n n 
CAD HADA HEM sing 266 n n 
CBD CGD HEM sing 267 n n 
CBD HBD HEM sing 268 n n 
CBD HBDA HEM sing 269 n n 
CGD O1D HEM doub 270 n n 
CGD O2D HEM sing 271 n n 
O2A H2A HEM sing 272 n n 
O2D H2D HEM sing 273 n n 
FE NA HEM sing 274 n n 
FE NB HEM sing 275 n n 
FE NC HEM sing 276 n n 
FE ND HEM sing 277 n n 
#
_atom_sites.entry_id                     6B82 
_atom_sites.fract_transf_matrix[1][1]    0.009531 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009531 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004255 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 601 600 HEM HEM . 
D 3 AER A 1 602 601 AER AER . 
E 4 ACT A 1 603 3 ACT ACT . 
F 2 HEM B 1 601 600 HEM HEM . 
G 3 AER B 1 602 601 AER AER . 
H 5 CL B 1 603 1 CL CL . 
I 4 ACT B 1 604 2 ACT ACT . 
J 4 ACT B 1 605 4 ACT ACT . 
K 4 ACT B 1 606 5 ACT ACT . 
L 6 HOH A 1 701 34 HOH HOH . 
L 6 HOH A 2 702 4 HOH HOH . 
L 6 HOH A 3 703 36 HOH HOH . 
L 6 HOH A 4 704 39 HOH HOH . 
L 6 HOH A 5 705 25 HOH HOH . 
L 6 HOH A 6 706 1 HOH HOH . 
L 6 HOH A 7 707 6 HOH HOH . 
L 6 HOH A 8 708 21 HOH HOH . 
L 6 HOH A 9 709 31 HOH HOH . 
L 6 HOH A 10 710 5 HOH HOH . 
L 6 HOH A 11 711 27 HOH HOH . 
L 6 HOH A 12 712 20 HOH HOH . 
L 6 HOH A 13 713 35 HOH HOH . 
L 6 HOH A 14 714 3 HOH HOH . 
L 6 HOH A 15 715 44 HOH HOH . 
L 6 HOH A 16 716 26 HOH HOH . 
L 6 HOH A 17 717 18 HOH HOH . 
L 6 HOH A 18 718 13 HOH HOH . 
L 6 HOH A 19 719 19 HOH HOH . 
L 6 HOH A 20 720 2 HOH HOH . 
L 6 HOH A 21 721 22 HOH HOH . 
M 6 HOH B 1 701 30 HOH HOH . 
M 6 HOH B 2 702 23 HOH HOH . 
M 6 HOH B 3 703 42 HOH HOH . 
M 6 HOH B 4 704 12 HOH HOH . 
M 6 HOH B 5 705 43 HOH HOH . 
M 6 HOH B 6 706 17 HOH HOH . 
M 6 HOH B 7 707 41 HOH HOH . 
M 6 HOH B 8 708 11 HOH HOH . 
M 6 HOH B 9 709 46 HOH HOH . 
M 6 HOH B 10 710 16 HOH HOH . 
M 6 HOH B 11 711 15 HOH HOH . 
M 6 HOH B 12 712 45 HOH HOH . 
M 6 HOH B 13 713 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . F 2 51.669 -13.902 -27.814 1 55.63 ? CHA HEM 601 B 1 
HETATM 2 C CHB HEM . . . F 2 49.012 -12.241 -24.167 1 53.91 ? CHB HEM 601 B 1 
HETATM 3 C CHC HEM . . . F 2 46.014 -10.312 -27.363 1 58.96 ? CHC HEM 601 B 1 
HETATM 4 C CHD HEM . . . F 2 48.98 -11.497 -30.984 1 56.83 ? CHD HEM 601 B 1 
HETATM 5 C C1A HEM . . . F 2 51.194 -13.633 -26.559 1 55.09 ? C1A HEM 601 B 1 
HETATM 6 C C2A HEM . . . F 2 51.705 -14.203 -25.372 1 58.76 ? C2A HEM 601 B 1 
HETATM 7 C C3A HEM . . . F 2 50.934 -13.745 -24.346 1 59.12 ? C3A HEM 601 B 1 
HETATM 8 C C4A HEM . . . F 2 49.988 -12.863 -24.901 1 57.06 ? C4A HEM 601 B 1 
HETATM 9 C CMA HEM . . . F 2 51.065 -14.058 -22.87 1 54.36 ? CMA HEM 601 B 1 
HETATM 10 C CAA HEM . . . F 2 52.823 -15.213 -25.266 1 62.1 ? CAA HEM 601 B 1 
HETATM 11 C CBA HEM . . . F 2 54.232 -14.677 -25.472 1 65.43 ? CBA HEM 601 B 1 
HETATM 12 C CGA HEM . . . F 2 55.207 -15.853 -25.335 1 73.43 ? CGA HEM 601 B 1 
HETATM 13 O O1A HEM . . . F 2 56.32 -15.56 -24.812 1 74.01 ? O1A HEM 601 B 1 
HETATM 14 O O2A HEM . . . F 2 54.937 -17.071 -25.687 1 63.72 ? O2A HEM 601 B 1 
HETATM 15 C C1B HEM . . . F 2 47.928 -11.586 -24.733 1 53.5 ? C1B HEM 601 B 1 
HETATM 16 C C2B HEM . . . F 2 46.853 -11.076 -23.955 1 56.68 ? C2B HEM 601 B 1 
HETATM 17 C C3B HEM . . . F 2 45.979 -10.524 -24.835 1 58.71 ? C3B HEM 601 B 1 
HETATM 18 C C4B HEM . . . F 2 46.563 -10.746 -26.181 1 55.74 ? C4B HEM 601 B 1 
HETATM 19 C CMB HEM . . . F 2 46.656 -11.093 -22.446 1 56.1 ? CMB HEM 601 B 1 
HETATM 20 C CAB HEM . . . F 2 44.724 -9.883 -24.394 1 65.34 ? CAB HEM 601 B 1 
HETATM 21 C CBB HEM . . . F 2 43.739 -9.422 -25.161 1 73.74 ? CBB HEM 601 B 1 
HETATM 22 C C1C HEM . . . F 2 46.555 -10.414 -28.633 1 60.15 ? C1C HEM 601 B 1 
HETATM 23 C C2C HEM . . . F 2 46.002 -9.852 -29.802 1 62.01 ? C2C HEM 601 B 1 
HETATM 24 C C3C HEM . . . F 2 46.822 -10.171 -30.855 1 58.94 ? C3C HEM 601 B 1 
HETATM 25 C C4C HEM . . . F 2 47.919 -10.938 -30.308 1 58.82 ? C4C HEM 601 B 1 
HETATM 26 C CMC HEM . . . F 2 44.735 -9.034 -29.942 1 64 ? CMC HEM 601 B 1 
HETATM 27 C CAC HEM . . . F 2 46.485 -9.7 -32.212 1 58.96 ? CAC HEM 601 B 1 
HETATM 28 C CBC HEM . . . F 2 47.226 -9.907 -33.287 1 65.22 ? CBC HEM 601 B 1 
HETATM 29 C C1D HEM . . . F 2 49.947 -12.276 -30.385 1 53.3 ? C1D HEM 601 B 1 
HETATM 30 C C2D HEM . . . F 2 50.984 -12.98 -31.171 1 52.87 ? C2D HEM 601 B 1 
HETATM 31 C C3D HEM . . . F 2 51.723 -13.643 -30.296 1 54.5 ? C3D HEM 601 B 1 
HETATM 32 C C4D HEM . . . F 2 51.123 -13.357 -28.973 1 55.05 ? C4D HEM 601 B 1 
HETATM 33 C CMD HEM . . . F 2 51.257 -13.002 -32.65 1 53.39 ? CMD HEM 601 B 1 
HETATM 34 C CAD HEM . . . F 2 52.925 -14.492 -30.663 1 57.72 ? CAD HEM 601 B 1 
HETATM 35 C CBD HEM . . . F 2 54.182 -13.615 -30.687 1 62.18 ? CBD HEM 601 B 1 
HETATM 36 C CGD HEM . . . F 2 55.445 -14.324 -31.135 1 59.56 ? CGD HEM 601 B 1 
HETATM 37 O O1D HEM . . . F 2 56.406 -13.597 -31.543 1 51.84 ? O1D HEM 601 B 1 
HETATM 38 O O2D HEM . . . F 2 55.53 -15.589 -31.086 1 55.2 ? O2D HEM 601 B 1 
HETATM 39 N NA HEM . . . F 2 50.13 -12.833 -26.254 1 56.32 ? NA HEM 601 B 1 
HETATM 40 N NB HEM . . . F 2 47.728 -11.339 -26.039 1 53.91 ? NB HEM 601 B 1 
HETATM 41 N NC HEM . . . F 2 47.699 -11.048 -28.956 1 55.4 ? NC HEM 601 B 1 
HETATM 42 N ND HEM . . . F 2 50.088 -12.491 -29.075 1 53.04 ? ND HEM 601 B 1 
HETATM 43 FE FE HEM . . . F 2 48.98 -11.973 -27.632 1 54.55 ? FE HEM 601 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           43 
#