data_6B82 # _model_server_result.job_id 3kW8HcJeKXOxcnyCz25Q_A _model_server_result.datetime_utc '2024-11-25 06:43:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b82 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 6B82 # _exptl.entry_id 6B82 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.509 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Abiraterone _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6B82 _cell.length_a 104.92 _cell.length_b 104.92 _cell.length_c 235 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B82 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 130 A CYS 146 1_555 B SG CYS 130 B CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf2 A SG CYS 421 A CYS 437 1_555 B SG CYS 421 B CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc1 A SG CYS 437 A CYS 453 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc2 C FE HEM . A HEM 601 1_555 D N22 AER . A AER 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc3 B SG CYS 437 B CYS 453 1_555 F FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc4 F FE HEM . B HEM 601 1_555 G N22 AER . B AER 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? # _chem_comp.formula 'C24 H31 N O' _chem_comp.formula_weight 349.509 _chem_comp.id AER _chem_comp.mon_nstd_flag . _chem_comp.name Abiraterone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3S,8R,9S,10R,13S,14S)-10,13-dimethyl-17-pyridin-3-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 H1 AER sing 7 n n C1 H1A AER sing 8 n n C2 C1 AER sing 9 n n C2 H2 AER sing 10 n n C2 H2A AER sing 11 n n C3 C2 AER sing 12 n n C3 H3 AER sing 13 n n O3 C3 AER sing 14 n n O3 HO3 AER sing 15 n n C4 C3 AER sing 16 n n C4 C5 AER sing 17 n n C4 H4 AER sing 18 n n C4 H4A AER sing 19 n n C5 C10 AER sing 20 n n C6 C5 AER doub 21 n n C6 C7 AER sing 22 n n C6 H6 AER sing 23 n n C7 C8 AER sing 24 n n C7 H7 AER sing 25 n n C7 H7A AER sing 26 n n C8 C14 AER sing 27 n n C8 C9 AER sing 28 n n C8 H8 AER sing 29 n n C9 C11 AER sing 30 n n C9 H9 AER sing 31 n n C10 C1 AER sing 32 n n C10 C9 AER sing 33 n n C11 C12 AER sing 34 n n C11 H11 AER sing 35 n n C11 H11A AER sing 36 n n C12 H12 AER sing 37 n n C12 H12A AER sing 38 n n C13 C12 AER sing 39 n n C13 C17 AER sing 40 n n C14 C13 AER sing 41 n n C14 H14 AER sing 42 n n C15 C14 AER sing 43 n n C15 C16 AER sing 44 n n C15 H15 AER sing 45 n n C15 H15A AER sing 46 n n C16 C17 AER doub 47 n n C16 H16 AER sing 48 n n C17 C20 AER sing 49 n n C18 C13 AER sing 50 n n C18 H18 AER sing 51 n n C18 H18A AER sing 52 n n C18 H18B AER sing 53 n n C19 C10 AER sing 54 n n C19 H19 AER sing 55 n n C19 H19A AER sing 56 n n C19 H19B AER sing 57 n n C20 C25 AER doub 58 n y C20 C21 AER sing 59 n y C21 N22 AER doub 60 n y C21 H21 AER sing 61 n n N22 C23 AER sing 62 n y C23 H23 AER sing 63 n n C24 C23 AER doub 64 n y C24 H24 AER sing 65 n n C25 C24 AER sing 66 n y C25 H25 AER sing 67 n n # _atom_sites.entry_id 6B82 _atom_sites.fract_transf_matrix[1][1] 0.009531 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009531 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004255 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 600 HEM HEM . D 3 AER A 1 602 601 AER AER . E 4 ACT A 1 603 3 ACT ACT . F 2 HEM B 1 601 600 HEM HEM . G 3 AER B 1 602 601 AER AER . H 5 CL B 1 603 1 CL CL . I 4 ACT B 1 604 2 ACT ACT . J 4 ACT B 1 605 4 ACT ACT . K 4 ACT B 1 606 5 ACT ACT . L 6 HOH A 1 701 34 HOH HOH . L 6 HOH A 2 702 4 HOH HOH . L 6 HOH A 3 703 36 HOH HOH . L 6 HOH A 4 704 39 HOH HOH . L 6 HOH A 5 705 25 HOH HOH . L 6 HOH A 6 706 1 HOH HOH . L 6 HOH A 7 707 6 HOH HOH . L 6 HOH A 8 708 21 HOH HOH . L 6 HOH A 9 709 31 HOH HOH . L 6 HOH A 10 710 5 HOH HOH . L 6 HOH A 11 711 27 HOH HOH . L 6 HOH A 12 712 20 HOH HOH . L 6 HOH A 13 713 35 HOH HOH . L 6 HOH A 14 714 3 HOH HOH . L 6 HOH A 15 715 44 HOH HOH . L 6 HOH A 16 716 26 HOH HOH . L 6 HOH A 17 717 18 HOH HOH . L 6 HOH A 18 718 13 HOH HOH . L 6 HOH A 19 719 19 HOH HOH . L 6 HOH A 20 720 2 HOH HOH . L 6 HOH A 21 721 22 HOH HOH . M 6 HOH B 1 701 30 HOH HOH . M 6 HOH B 2 702 23 HOH HOH . M 6 HOH B 3 703 42 HOH HOH . M 6 HOH B 4 704 12 HOH HOH . M 6 HOH B 5 705 43 HOH HOH . M 6 HOH B 6 706 17 HOH HOH . M 6 HOH B 7 707 41 HOH HOH . M 6 HOH B 8 708 11 HOH HOH . M 6 HOH B 9 709 46 HOH HOH . M 6 HOH B 10 710 16 HOH HOH . M 6 HOH B 11 711 15 HOH HOH . M 6 HOH B 12 712 45 HOH HOH . M 6 HOH B 13 713 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AER . . . D 3 65.903 22.567 -32.027 1 65.14 ? C1 AER 602 A 1 HETATM 2 C C2 AER . . . D 3 66.961 23.205 -32.931 1 63.66 ? C2 AER 602 A 1 HETATM 3 C C3 AER . . . D 3 66.837 22.646 -34.338 1 65.53 ? C3 AER 602 A 1 HETATM 4 O O3 AER . . . D 3 67.871 23.187 -35.169 1 68.77 ? O3 AER 602 A 1 HETATM 5 C C4 AER . . . D 3 65.458 22.994 -34.883 1 63.88 ? C4 AER 602 A 1 HETATM 6 C C5 AER . . . D 3 64.385 22.439 -33.98 1 61.33 ? C5 AER 602 A 1 HETATM 7 C C6 AER . . . D 3 63.364 21.773 -34.547 1 60.23 ? C6 AER 602 A 1 HETATM 8 C C7 AER . . . D 3 62.085 21.458 -33.793 1 62.81 ? C7 AER 602 A 1 HETATM 9 C C8 AER . . . D 3 62.112 21.877 -32.316 1 58.9 ? C8 AER 602 A 1 HETATM 10 C C9 AER . . . D 3 63.519 21.788 -31.735 1 60.33 ? C9 AER 602 A 1 HETATM 11 C C10 AER . . . D 3 64.451 22.752 -32.492 1 63.2 ? C10 AER 602 A 1 HETATM 12 C C11 AER . . . D 3 63.584 21.865 -30.188 1 61.46 ? C11 AER 602 A 1 HETATM 13 C C12 AER . . . D 3 62.507 21.051 -29.434 1 62.61 ? C12 AER 602 A 1 HETATM 14 C C13 AER . . . D 3 61.143 21.286 -30.037 1 58.92 ? C13 AER 602 A 1 HETATM 15 C C14 AER . . . D 3 61.255 20.947 -31.513 1 58.97 ? C14 AER 602 A 1 HETATM 16 C C15 AER . . . D 3 59.837 20.759 -32.009 1 61.36 ? C15 AER 602 A 1 HETATM 17 C C16 AER . . . D 3 59.424 19.771 -30.947 1 63.96 ? C16 AER 602 A 1 HETATM 18 C C17 AER . . . D 3 59.971 20.388 -29.645 1 62.19 ? C17 AER 602 A 1 HETATM 19 C C18 AER . . . D 3 60.709 22.731 -29.732 1 59.85 ? C18 AER 602 A 1 HETATM 20 C C19 AER . . . D 3 64.045 24.222 -32.298 1 66.73 ? C19 AER 602 A 1 HETATM 21 C C20 AER . . . D 3 60.062 19.47 -28.478 1 63.09 ? C20 AER 602 A 1 HETATM 22 C C21 AER . . . D 3 59.755 18.115 -28.59 1 66.06 ? C21 AER 602 A 1 HETATM 23 N N22 AER . . . D 3 59.736 17.322 -27.501 1 71.57 ? N22 AER 602 A 1 HETATM 24 C C23 AER . . . D 3 59.996 17.832 -26.288 1 68.34 ? C23 AER 602 A 1 HETATM 25 C C24 AER . . . D 3 60.264 19.172 -26.107 1 64.65 ? C24 AER 602 A 1 HETATM 26 C C25 AER . . . D 3 60.279 20.006 -27.204 1 63.17 ? C25 AER 602 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #