data_6B8J
#
_model_server_result.job_id            KTBeCY7Vx0XSzX14VgXaIQ 
_model_server_result.datetime_utc      '2024-11-20 01:20:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6b8j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    6B8J 
#
_exptl.entry_id    6B8J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.53 
_cell.angle_gamma         90 
_cell.entry_id            6B8J 
_cell.length_a            56.747 
_cell.length_b            65.07 
_cell.length_c            57.336 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6B8J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 215 A SER 215 1_555 A N PTR 216 A PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C PTR 216 A PTR 216 1_555 A N ILE 217 A ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 B C VAL 1 C VAL 1 1_555 B N SEP 2 C SEP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 B C SEP 2 C SEP 2 1_555 B N ARG 3 C ARG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 182 n n 
C1 C2 GOL sing 183 n n 
C1 H11 GOL sing 184 n n 
C1 H12 GOL sing 185 n n 
O1 HO1 GOL sing 186 n n 
C2 O2 GOL sing 187 n n 
C2 C3 GOL sing 188 n n 
C2 H2 GOL sing 189 n n 
O2 HO2 GOL sing 190 n n 
C3 O3 GOL sing 191 n n 
C3 H31 GOL sing 192 n n 
C3 H32 GOL sing 193 n n 
O3 HO3 GOL sing 194 n n 
#
_atom_sites.entry_id                     6B8J 
_atom_sites.fract_transf_matrix[1][1]    0.017622 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003276 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015368 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01774 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 501 1 GOL GOL . 
D 4 65C A 1 502 1 65C 911 . 
E 5 HOH A 1 601 55 HOH HOH . 
E 5 HOH A 2 602 235 HOH HOH . 
E 5 HOH A 3 603 134 HOH HOH . 
E 5 HOH A 4 604 292 HOH HOH . 
E 5 HOH A 5 605 26 HOH HOH . 
E 5 HOH A 6 606 21 HOH HOH . 
E 5 HOH A 7 607 149 HOH HOH . 
E 5 HOH A 8 608 166 HOH HOH . 
E 5 HOH A 9 609 173 HOH HOH . 
E 5 HOH A 10 610 16 HOH HOH . 
E 5 HOH A 11 611 179 HOH HOH . 
E 5 HOH A 12 612 295 HOH HOH . 
E 5 HOH A 13 613 153 HOH HOH . 
E 5 HOH A 14 614 59 HOH HOH . 
E 5 HOH A 15 615 188 HOH HOH . 
E 5 HOH A 16 616 47 HOH HOH . 
E 5 HOH A 17 617 88 HOH HOH . 
E 5 HOH A 18 618 101 HOH HOH . 
E 5 HOH A 19 619 39 HOH HOH . 
E 5 HOH A 20 620 234 HOH HOH . 
E 5 HOH A 21 621 158 HOH HOH . 
E 5 HOH A 22 622 62 HOH HOH . 
E 5 HOH A 23 623 146 HOH HOH . 
E 5 HOH A 24 624 171 HOH HOH . 
E 5 HOH A 25 625 189 HOH HOH . 
E 5 HOH A 26 626 58 HOH HOH . 
E 5 HOH A 27 627 29 HOH HOH . 
E 5 HOH A 28 628 2 HOH HOH . 
E 5 HOH A 29 629 118 HOH HOH . 
E 5 HOH A 30 630 135 HOH HOH . 
E 5 HOH A 31 631 105 HOH HOH . 
E 5 HOH A 32 632 107 HOH HOH . 
E 5 HOH A 33 633 109 HOH HOH . 
E 5 HOH A 34 634 57 HOH HOH . 
E 5 HOH A 35 635 128 HOH HOH . 
E 5 HOH A 36 636 42 HOH HOH . 
E 5 HOH A 37 637 243 HOH HOH . 
E 5 HOH A 38 638 80 HOH HOH . 
E 5 HOH A 39 639 219 HOH HOH . 
E 5 HOH A 40 640 192 HOH HOH . 
E 5 HOH A 41 641 50 HOH HOH . 
E 5 HOH A 42 642 18 HOH HOH . 
E 5 HOH A 43 643 51 HOH HOH . 
E 5 HOH A 44 644 174 HOH HOH . 
E 5 HOH A 45 645 257 HOH HOH . 
E 5 HOH A 46 646 204 HOH HOH . 
E 5 HOH A 47 647 43 HOH HOH . 
E 5 HOH A 48 648 9 HOH HOH . 
E 5 HOH A 49 649 85 HOH HOH . 
E 5 HOH A 50 650 40 HOH HOH . 
E 5 HOH A 51 651 270 HOH HOH . 
E 5 HOH A 52 652 206 HOH HOH . 
E 5 HOH A 53 653 41 HOH HOH . 
E 5 HOH A 54 654 1 HOH HOH . 
E 5 HOH A 55 655 52 HOH HOH . 
E 5 HOH A 56 656 112 HOH HOH . 
E 5 HOH A 57 657 6 HOH HOH . 
E 5 HOH A 58 658 69 HOH HOH . 
E 5 HOH A 59 659 247 HOH HOH . 
E 5 HOH A 60 660 260 HOH HOH . 
E 5 HOH A 61 661 36 HOH HOH . 
E 5 HOH A 62 662 45 HOH HOH . 
E 5 HOH A 63 663 10 HOH HOH . 
E 5 HOH A 64 664 84 HOH HOH . 
E 5 HOH A 65 665 78 HOH HOH . 
E 5 HOH A 66 666 212 HOH HOH . 
E 5 HOH A 67 667 31 HOH HOH . 
E 5 HOH A 68 668 138 HOH HOH . 
E 5 HOH A 69 669 37 HOH HOH . 
E 5 HOH A 70 670 64 HOH HOH . 
E 5 HOH A 71 671 196 HOH HOH . 
E 5 HOH A 72 672 34 HOH HOH . 
E 5 HOH A 73 673 230 HOH HOH . 
E 5 HOH A 74 674 90 HOH HOH . 
E 5 HOH A 75 675 97 HOH HOH . 
E 5 HOH A 76 676 210 HOH HOH . 
E 5 HOH A 77 677 25 HOH HOH . 
E 5 HOH A 78 678 293 HOH HOH . 
E 5 HOH A 79 679 17 HOH HOH . 
E 5 HOH A 80 680 33 HOH HOH . 
E 5 HOH A 81 681 11 HOH HOH . 
E 5 HOH A 82 682 288 HOH HOH . 
E 5 HOH A 83 683 35 HOH HOH . 
E 5 HOH A 84 684 71 HOH HOH . 
E 5 HOH A 85 685 60 HOH HOH . 
E 5 HOH A 86 686 70 HOH HOH . 
E 5 HOH A 87 687 19 HOH HOH . 
E 5 HOH A 88 688 68 HOH HOH . 
E 5 HOH A 89 689 66 HOH HOH . 
E 5 HOH A 90 690 269 HOH HOH . 
E 5 HOH A 91 691 148 HOH HOH . 
E 5 HOH A 92 692 111 HOH HOH . 
E 5 HOH A 93 693 104 HOH HOH . 
E 5 HOH A 94 694 167 HOH HOH . 
E 5 HOH A 95 695 284 HOH HOH . 
E 5 HOH A 96 696 263 HOH HOH . 
E 5 HOH A 97 697 278 HOH HOH . 
E 5 HOH A 98 698 76 HOH HOH . 
E 5 HOH A 99 699 103 HOH HOH . 
E 5 HOH A 100 700 218 HOH HOH . 
E 5 HOH A 101 701 275 HOH HOH . 
E 5 HOH A 102 702 227 HOH HOH . 
E 5 HOH A 103 703 197 HOH HOH . 
E 5 HOH A 104 704 54 HOH HOH . 
E 5 HOH A 105 705 113 HOH HOH . 
E 5 HOH A 106 706 272 HOH HOH . 
E 5 HOH A 107 707 4 HOH HOH . 
E 5 HOH A 108 708 261 HOH HOH . 
E 5 HOH A 109 709 115 HOH HOH . 
E 5 HOH A 110 710 30 HOH HOH . 
E 5 HOH A 111 711 217 HOH HOH . 
E 5 HOH A 112 712 91 HOH HOH . 
E 5 HOH A 113 713 141 HOH HOH . 
E 5 HOH A 114 714 46 HOH HOH . 
E 5 HOH A 115 715 209 HOH HOH . 
E 5 HOH A 116 716 208 HOH HOH . 
E 5 HOH A 117 717 53 HOH HOH . 
E 5 HOH A 118 718 265 HOH HOH . 
E 5 HOH A 119 719 268 HOH HOH . 
E 5 HOH A 120 720 205 HOH HOH . 
E 5 HOH A 121 721 294 HOH HOH . 
E 5 HOH A 122 722 159 HOH HOH . 
E 5 HOH A 123 723 216 HOH HOH . 
E 5 HOH A 124 724 27 HOH HOH . 
E 5 HOH A 125 725 22 HOH HOH . 
E 5 HOH A 126 726 194 HOH HOH . 
E 5 HOH A 127 727 106 HOH HOH . 
E 5 HOH A 128 728 130 HOH HOH . 
E 5 HOH A 129 729 3 HOH HOH . 
E 5 HOH A 130 730 129 HOH HOH . 
E 5 HOH A 131 731 23 HOH HOH . 
E 5 HOH A 132 732 274 HOH HOH . 
E 5 HOH A 133 733 86 HOH HOH . 
E 5 HOH A 134 734 125 HOH HOH . 
E 5 HOH A 135 735 5 HOH HOH . 
E 5 HOH A 136 736 74 HOH HOH . 
E 5 HOH A 137 737 283 HOH HOH . 
E 5 HOH A 138 738 264 HOH HOH . 
E 5 HOH A 139 739 244 HOH HOH . 
E 5 HOH A 140 740 73 HOH HOH . 
E 5 HOH A 141 741 199 HOH HOH . 
E 5 HOH A 142 742 223 HOH HOH . 
E 5 HOH A 143 743 285 HOH HOH . 
E 5 HOH A 144 744 211 HOH HOH . 
E 5 HOH A 145 745 228 HOH HOH . 
E 5 HOH A 146 746 63 HOH HOH . 
E 5 HOH A 147 747 276 HOH HOH . 
E 5 HOH A 148 748 156 HOH HOH . 
E 5 HOH A 149 749 13 HOH HOH . 
E 5 HOH A 150 750 28 HOH HOH . 
E 5 HOH A 151 751 44 HOH HOH . 
E 5 HOH A 152 752 83 HOH HOH . 
E 5 HOH A 153 753 225 HOH HOH . 
E 5 HOH A 154 754 132 HOH HOH . 
E 5 HOH A 155 755 176 HOH HOH . 
E 5 HOH A 156 756 116 HOH HOH . 
E 5 HOH A 157 757 79 HOH HOH . 
E 5 HOH A 158 758 14 HOH HOH . 
E 5 HOH A 159 759 100 HOH HOH . 
E 5 HOH A 160 760 286 HOH HOH . 
E 5 HOH A 161 761 94 HOH HOH . 
E 5 HOH A 162 762 195 HOH HOH . 
E 5 HOH A 163 763 65 HOH HOH . 
E 5 HOH A 164 764 32 HOH HOH . 
E 5 HOH A 165 765 259 HOH HOH . 
E 5 HOH A 166 766 124 HOH HOH . 
E 5 HOH A 167 767 98 HOH HOH . 
E 5 HOH A 168 768 157 HOH HOH . 
E 5 HOH A 169 769 290 HOH HOH . 
E 5 HOH A 170 770 81 HOH HOH . 
E 5 HOH A 171 771 24 HOH HOH . 
E 5 HOH A 172 772 95 HOH HOH . 
E 5 HOH A 173 773 61 HOH HOH . 
E 5 HOH A 174 774 82 HOH HOH . 
E 5 HOH A 175 775 262 HOH HOH . 
E 5 HOH A 176 776 214 HOH HOH . 
E 5 HOH A 177 777 207 HOH HOH . 
E 5 HOH A 178 778 72 HOH HOH . 
E 5 HOH A 179 779 77 HOH HOH . 
E 5 HOH A 180 780 287 HOH HOH . 
E 5 HOH A 181 781 271 HOH HOH . 
E 5 HOH A 182 782 165 HOH HOH . 
E 5 HOH A 183 783 187 HOH HOH . 
E 5 HOH A 184 784 254 HOH HOH . 
E 5 HOH A 185 785 20 HOH HOH . 
E 5 HOH A 186 786 258 HOH HOH . 
E 5 HOH A 187 787 92 HOH HOH . 
E 5 HOH A 188 788 252 HOH HOH . 
E 5 HOH A 189 789 38 HOH HOH . 
E 5 HOH A 190 790 256 HOH HOH . 
E 5 HOH A 191 791 12 HOH HOH . 
E 5 HOH A 192 792 236 HOH HOH . 
E 5 HOH A 193 793 15 HOH HOH . 
E 5 HOH A 194 794 185 HOH HOH . 
E 5 HOH A 195 795 89 HOH HOH . 
E 5 HOH A 196 796 213 HOH HOH . 
E 5 HOH A 197 797 277 HOH HOH . 
E 5 HOH A 198 798 110 HOH HOH . 
E 5 HOH A 199 799 242 HOH HOH . 
E 5 HOH A 200 800 280 HOH HOH . 
E 5 HOH A 201 801 240 HOH HOH . 
F 5 HOH C 1 101 56 HOH HOH . 
F 5 HOH C 2 102 48 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 16.72 22.587 3.653 1 35.66 ? C1 GOL 501 A 1 
HETATM 2 O O1 GOL . . . C 3 16.846 21.218 3.922 1 36.79 ? O1 GOL 501 A 1 
HETATM 3 C C2 GOL . . . C 3 15.179 22.928 3.698 1 36 ? C2 GOL 501 A 1 
HETATM 4 O O2 GOL . . . C 3 14.42 21.812 4.045 1 36.77 ? O2 GOL 501 A 1 
HETATM 5 C C3 GOL . . . C 3 14.791 23.501 2.279 1 34.53 ? C3 GOL 501 A 1 
HETATM 6 O O3 GOL . . . C 3 13.867 22.614 1.72 1 36.21 ? O3 GOL 501 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#