data_6B8O
#
_model_server_result.job_id            85geuyUHr0htrusoDf4NKA 
_model_server_result.datetime_utc      '2024-12-02 14:46:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6b8o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"MA","auth_seq_id":201}' 
#
_entry.id    6B8O 
#
_exptl.entry_id    6B8O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6B8O 
_cell.length_a            160.331 
_cell.length_b            160.331 
_cell.length_c            86.205 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6B8O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 R N N 
? 2 Z N N 
? 2 CA N N 
? 2 HA N N 
? 2 MA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 18 A CYS 36 1_555 A SG CYS 92 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
disulf ? disulf2 B SG CYS 18 B CYS 36 1_555 B SG CYS 92 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
disulf ? disulf3 C SG CYS 18 C CYS 36 1_555 C SG CYS 92 C CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
disulf ? disulf4 D SG CYS 18 D CYS 36 1_555 D SG CYS 92 D CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf5 D SG CYS 33 D CYS 51 1_555 D SG CYS 42 D CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? 
disulf ? disulf6 E SG CYS 18 E CYS 36 1_555 E SG CYS 92 E CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
disulf ? disulf7 F SG CYS 18 F CYS 36 1_555 F SG CYS 92 F CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 A ND2 ASN 61 A ASN 79 1_555 G C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
covale ? covale2 B ND2 ASN 61 B ASN 79 1_555 R C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? 
covale ? covale3 C ND2 ASN 61 C ASN 79 1_555 Z C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale4 D ND2 ASN 61 D ASN 79 1_555 CA C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale5 E ND2 ASN 61 E ASN 79 1_555 HA C1 NAG . E NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? 
covale ? covale6 F ND2 ASN 61 F ASN 79 1_555 MA C1 NAG . F NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 246 n n 
C1 O1 NAG sing 247 n n 
C1 O5 NAG sing 248 n n 
C1 H1 NAG sing 249 n n 
C2 C3 NAG sing 250 n n 
C2 N2 NAG sing 251 n n 
C2 H2 NAG sing 252 n n 
C3 C4 NAG sing 253 n n 
C3 O3 NAG sing 254 n n 
C3 H3 NAG sing 255 n n 
C4 C5 NAG sing 256 n n 
C4 O4 NAG sing 257 n n 
C4 H4 NAG sing 258 n n 
C5 C6 NAG sing 259 n n 
C5 O5 NAG sing 260 n n 
C5 H5 NAG sing 261 n n 
C6 O6 NAG sing 262 n n 
C6 H61 NAG sing 263 n n 
C6 H62 NAG sing 264 n n 
C7 C8 NAG sing 265 n n 
C7 N2 NAG sing 266 n n 
C7 O7 NAG doub 267 n n 
C8 H81 NAG sing 268 n n 
C8 H82 NAG sing 269 n n 
C8 H83 NAG sing 270 n n 
N2 HN2 NAG sing 271 n n 
O1 HO1 NAG sing 272 n n 
O3 HO3 NAG sing 273 n n 
O4 HO4 NAG sing 274 n n 
O6 HO6 NAG sing 275 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6B8O 
_atom_sites.fract_transf_matrix[1][1]    0.006237 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006237 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0116 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 NAG A 1 201 1 NAG NAG . 
H 3 IOD A 1 202 3 IOD IOD . 
I 3 IOD A 1 203 10 IOD IOD . 
J 3 IOD A 1 204 11 IOD IOD . 
K 4 SO4 A 1 205 3 SO4 SO4 . 
L 4 SO4 A 1 206 13 SO4 SO4 . 
M 5 EDO A 1 207 1 EDO EDO . 
N 5 EDO A 1 208 2 EDO EDO . 
O 5 EDO A 1 209 4 EDO EDO . 
P 5 EDO A 1 210 8 EDO EDO . 
Q 5 EDO A 1 211 9 EDO EDO . 
R 2 NAG B 1 201 2 NAG NAG . 
S 3 IOD B 1 202 7 IOD IOD . 
T 3 IOD B 1 203 12 IOD IOD . 
U 6 PSF B 1 204 4 PSF PSF . 
V 5 EDO B 1 205 5 EDO EDO . 
W 5 EDO B 1 206 7 EDO EDO . 
X 5 EDO B 1 207 11 EDO EDO . 
Y 5 EDO B 1 208 13 EDO EDO . 
Z 2 NAG C 1 201 5 NAG NAG . 
AA 3 IOD C 1 202 9 IOD IOD . 
BA 6 PSF C 1 203 2 PSF PSF . 
CA 2 NAG D 1 201 4 NAG NAG . 
DA 4 SO4 D 1 202 7 SO4 SO4 . 
EA 4 SO4 D 1 203 8 SO4 SO4 . 
FA 4 SO4 D 1 204 16 SO4 SO4 . 
GA 6 PSF D 1 205 3 PSF PSF . 
HA 2 NAG E 1 201 6 NAG NAG . 
IA 3 IOD E 1 202 13 IOD IOD . 
JA 4 SO4 E 1 203 19 SO4 SO4 . 
KA 4 SO4 E 1 204 20 SO4 SO4 . 
LA 4 SO4 E 1 205 21 SO4 SO4 . 
MA 2 NAG F 1 201 7 NAG NAG . 
NA 4 SO4 F 1 202 14 SO4 SO4 . 
OA 4 SO4 F 1 203 17 SO4 SO4 . 
PA 4 SO4 F 1 204 18 SO4 SO4 . 
QA 5 EDO F 1 205 3 EDO EDO . 
RA 7 HOH A 1 301 94 HOH HOH . 
RA 7 HOH A 2 302 67 HOH HOH . 
RA 7 HOH A 3 303 50 HOH HOH . 
RA 7 HOH A 4 304 56 HOH HOH . 
RA 7 HOH A 5 305 4 HOH HOH . 
RA 7 HOH A 6 306 39 HOH HOH . 
RA 7 HOH A 7 307 3 HOH HOH . 
RA 7 HOH A 8 308 62 HOH HOH . 
RA 7 HOH A 9 309 43 HOH HOH . 
RA 7 HOH A 10 310 5 HOH HOH . 
RA 7 HOH A 11 311 53 HOH HOH . 
RA 7 HOH A 12 312 60 HOH HOH . 
RA 7 HOH A 13 313 86 HOH HOH . 
RA 7 HOH A 14 314 9 HOH HOH . 
RA 7 HOH A 15 315 2 HOH HOH . 
SA 7 HOH B 1 301 58 HOH HOH . 
SA 7 HOH B 2 302 42 HOH HOH . 
SA 7 HOH B 3 303 7 HOH HOH . 
SA 7 HOH B 4 304 14 HOH HOH . 
SA 7 HOH B 5 305 24 HOH HOH . 
TA 7 HOH C 1 301 65 HOH HOH . 
TA 7 HOH C 2 302 72 HOH HOH . 
TA 7 HOH C 3 303 44 HOH HOH . 
TA 7 HOH C 4 304 71 HOH HOH . 
TA 7 HOH C 5 305 59 HOH HOH . 
TA 7 HOH C 6 306 34 HOH HOH . 
TA 7 HOH C 7 307 23 HOH HOH . 
TA 7 HOH C 8 308 96 HOH HOH . 
TA 7 HOH C 9 309 69 HOH HOH . 
TA 7 HOH C 10 310 57 HOH HOH . 
TA 7 HOH C 11 311 85 HOH HOH . 
TA 7 HOH C 12 312 6 HOH HOH . 
TA 7 HOH C 13 313 95 HOH HOH . 
TA 7 HOH C 14 314 40 HOH HOH . 
UA 7 HOH D 1 301 90 HOH HOH . 
UA 7 HOH D 2 302 98 HOH HOH . 
UA 7 HOH D 3 303 93 HOH HOH . 
UA 7 HOH D 4 304 37 HOH HOH . 
UA 7 HOH D 5 305 92 HOH HOH . 
UA 7 HOH D 6 306 91 HOH HOH . 
UA 7 HOH D 7 307 66 HOH HOH . 
UA 7 HOH D 8 308 84 HOH HOH . 
UA 7 HOH D 9 309 35 HOH HOH . 
UA 7 HOH D 10 310 38 HOH HOH . 
UA 7 HOH D 11 311 46 HOH HOH . 
UA 7 HOH D 12 312 89 HOH HOH . 
VA 7 HOH E 1 301 29 HOH HOH . 
VA 7 HOH E 2 302 61 HOH HOH . 
VA 7 HOH E 3 303 49 HOH HOH . 
VA 7 HOH E 4 304 55 HOH HOH . 
VA 7 HOH E 5 305 78 HOH HOH . 
VA 7 HOH E 6 306 21 HOH HOH . 
VA 7 HOH E 7 307 70 HOH HOH . 
VA 7 HOH E 8 308 79 HOH HOH . 
VA 7 HOH E 9 309 28 HOH HOH . 
VA 7 HOH E 10 310 80 HOH HOH . 
VA 7 HOH E 11 311 48 HOH HOH . 
VA 7 HOH E 12 312 51 HOH HOH . 
VA 7 HOH E 13 313 77 HOH HOH . 
VA 7 HOH E 14 314 82 HOH HOH . 
VA 7 HOH E 15 315 52 HOH HOH . 
WA 7 HOH F 1 301 64 HOH HOH . 
WA 7 HOH F 2 302 87 HOH HOH . 
WA 7 HOH F 3 303 88 HOH HOH . 
WA 7 HOH F 4 304 25 HOH HOH . 
WA 7 HOH F 5 305 45 HOH HOH . 
WA 7 HOH F 6 306 54 HOH HOH . 
WA 7 HOH F 7 307 81 HOH HOH . 
WA 7 HOH F 8 308 33 HOH HOH . 
WA 7 HOH F 9 309 97 HOH HOH . 
WA 7 HOH F 10 310 63 HOH HOH . 
WA 7 HOH F 11 311 68 HOH HOH . 
WA 7 HOH F 12 312 31 HOH HOH . 
WA 7 HOH F 13 313 99 HOH HOH . 
WA 7 HOH F 14 314 41 HOH HOH . 
WA 7 HOH F 15 315 36 HOH HOH . 
WA 7 HOH F 16 316 83 HOH HOH . 
WA 7 HOH F 17 317 16 HOH HOH . 
WA 7 HOH F 18 318 73 HOH HOH . 
WA 7 HOH F 19 319 30 HOH HOH . 
WA 7 HOH F 20 320 32 HOH HOH . 
WA 7 HOH F 21 321 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . MA 2 -60.656 30.595 39.527 1 66.59 ? C1 NAG 201 F 1 
HETATM 2 C C2 NAG . . . MA 2 -59.813 31.523 40.393 1 73.35 ? C2 NAG 201 F 1 
HETATM 3 C C3 NAG . . . MA 2 -60.696 32.245 41.399 1 74.76 ? C3 NAG 201 F 1 
HETATM 4 C C4 NAG . . . MA 2 -61.895 32.949 40.726 1 78.69 ? C4 NAG 201 F 1 
HETATM 5 C C5 NAG . . . MA 2 -62.593 32.07 39.672 1 74.57 ? C5 NAG 201 F 1 
HETATM 6 C C6 NAG . . . MA 2 -63.507 32.872 38.756 1 76.75 ? C6 NAG 201 F 1 
HETATM 7 C C7 NAG . . . MA 2 -57.456 30.936 40.676 1 94.68 ? C7 NAG 201 F 1 
HETATM 8 C C8 NAG . . . MA 2 -56.525 29.962 41.343 1 99.2 ? C8 NAG 201 F 1 
HETATM 9 N N2 NAG . . . MA 2 -58.743 30.735 40.961 1 87.26 ? N2 NAG 201 F 1 
HETATM 10 O O3 NAG . . . MA 2 -59.894 33.253 41.958 1 68.19 ? O3 NAG 201 F 1 
HETATM 11 O O4 NAG . . . MA 2 -62.826 33.355 41.733 1 80.71 ? O4 NAG 201 F 1 
HETATM 12 O O5 NAG . . . MA 2 -61.616 31.433 38.846 1 77.49 ? O5 NAG 201 F 1 
HETATM 13 O O6 NAG . . . MA 2 -64.398 32.007 38.036 1 73.61 ? O6 NAG 201 F 1 
HETATM 14 O O7 NAG . . . MA 2 -57.051 31.845 39.957 1 90.41 ? O7 NAG 201 F 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           985 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           14 
#