data_6B8O # _model_server_result.job_id ToxGBzHsC50q-ve1FQERYg _model_server_result.datetime_utc '2024-12-02 15:03:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":204}' # _entry.id 6B8O # _exptl.entry_id 6B8O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 455.437 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6B8O _cell.length_a 160.331 _cell.length_b 160.331 _cell.length_c 86.205 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 U N N ? 6 BA N N ? 6 GA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 36 1_555 A SG CYS 92 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf2 B SG CYS 18 B CYS 36 1_555 B SG CYS 92 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? disulf ? disulf3 C SG CYS 18 C CYS 36 1_555 C SG CYS 92 C CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf4 D SG CYS 18 D CYS 36 1_555 D SG CYS 92 D CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf5 D SG CYS 33 D CYS 51 1_555 D SG CYS 42 D CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? disulf ? disulf6 E SG CYS 18 E CYS 36 1_555 E SG CYS 92 E CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? disulf ? disulf7 F SG CYS 18 F CYS 36 1_555 F SG CYS 92 F CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 61 A ASN 79 1_555 G C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale2 B ND2 ASN 61 B ASN 79 1_555 R C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale3 C ND2 ASN 61 C ASN 79 1_555 Z C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 D ND2 ASN 61 D ASN 79 1_555 CA C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 E ND2 ASN 61 E ASN 79 1_555 HA C1 NAG . E NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale6 F ND2 ASN 61 F ASN 79 1_555 MA C1 NAG . F NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'C18 H34 N O10 P' _chem_comp.formula_weight 455.437 _chem_comp.id PSF _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PHOSPHATIDYLSERINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 P PSF sing 316 n n O2 C2 PSF sing 317 n n O1 P PSF sing 318 n n O1 CB PSF sing 319 n n P O4 PSF doub 320 n n P O3 PSF sing 321 n n O3 HO3 PSF sing 322 n n C2 C3 PSF sing 323 n n C2 H21 PSF sing 324 n n C2 H22 PSF sing 325 n n C3 O11 PSF sing 326 n n C3 C4 PSF sing 327 n n C3 H31 PSF sing 328 n n O11 C1 PSF sing 329 n n O12 C1 PSF doub 330 n n C1 C13 PSF sing 331 n n C4 O52 PSF sing 332 n n C4 H41 PSF sing 333 n n C4 H42 PSF sing 334 n n C5 O51 PSF doub 335 n n C5 O52 PSF sing 336 n n C5 C6 PSF sing 337 n n C6 C7 PSF sing 338 n n C6 H61 PSF sing 339 n n C6 H62 PSF sing 340 n n C7 C8 PSF sing 341 n n C7 H71 PSF sing 342 n n C7 H72 PSF sing 343 n n C13 C14 PSF sing 344 n n C13 H131 PSF sing 345 n n C13 H132 PSF sing 346 n n C14 C15 PSF sing 347 n n C14 H141 PSF sing 348 n n C14 H142 PSF sing 349 n n C15 C16 PSF sing 350 n n C15 H151 PSF sing 351 n n C15 H152 PSF sing 352 n n N CA PSF sing 353 n n N H1 PSF sing 354 n n N H2 PSF sing 355 n n CA CB PSF sing 356 n n CA C PSF sing 357 n n CA HA PSF sing 358 n n CB HB1 PSF sing 359 n n CB HB2 PSF sing 360 n n C OT1 PSF doub 361 n n C OT2 PSF sing 362 n n OT2 HXT PSF sing 363 n n C8 C9 PSF sing 364 n n C8 H81 PSF sing 365 n n C8 H82 PSF sing 366 n n C9 C10 PSF sing 367 n n C9 H91 PSF sing 368 n n C9 H92 PSF sing 369 n n C10 H101 PSF sing 370 n n C10 H102 PSF sing 371 n n C10 H103 PSF sing 372 n n C16 C17 PSF sing 373 n n C16 H161 PSF sing 374 n n C16 H162 PSF sing 375 n n C17 H171 PSF sing 376 n n C17 H172 PSF sing 377 n n C17 H173 PSF sing 378 n n # _atom_sites.entry_id 6B8O _atom_sites.fract_transf_matrix[1][1] 0.006237 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NAG A 1 201 1 NAG NAG . H 3 IOD A 1 202 3 IOD IOD . I 3 IOD A 1 203 10 IOD IOD . J 3 IOD A 1 204 11 IOD IOD . K 4 SO4 A 1 205 3 SO4 SO4 . L 4 SO4 A 1 206 13 SO4 SO4 . M 5 EDO A 1 207 1 EDO EDO . N 5 EDO A 1 208 2 EDO EDO . O 5 EDO A 1 209 4 EDO EDO . P 5 EDO A 1 210 8 EDO EDO . Q 5 EDO A 1 211 9 EDO EDO . R 2 NAG B 1 201 2 NAG NAG . S 3 IOD B 1 202 7 IOD IOD . T 3 IOD B 1 203 12 IOD IOD . U 6 PSF B 1 204 4 PSF PSF . V 5 EDO B 1 205 5 EDO EDO . W 5 EDO B 1 206 7 EDO EDO . X 5 EDO B 1 207 11 EDO EDO . Y 5 EDO B 1 208 13 EDO EDO . Z 2 NAG C 1 201 5 NAG NAG . AA 3 IOD C 1 202 9 IOD IOD . BA 6 PSF C 1 203 2 PSF PSF . CA 2 NAG D 1 201 4 NAG NAG . DA 4 SO4 D 1 202 7 SO4 SO4 . EA 4 SO4 D 1 203 8 SO4 SO4 . FA 4 SO4 D 1 204 16 SO4 SO4 . GA 6 PSF D 1 205 3 PSF PSF . HA 2 NAG E 1 201 6 NAG NAG . IA 3 IOD E 1 202 13 IOD IOD . JA 4 SO4 E 1 203 19 SO4 SO4 . KA 4 SO4 E 1 204 20 SO4 SO4 . LA 4 SO4 E 1 205 21 SO4 SO4 . MA 2 NAG F 1 201 7 NAG NAG . NA 4 SO4 F 1 202 14 SO4 SO4 . OA 4 SO4 F 1 203 17 SO4 SO4 . PA 4 SO4 F 1 204 18 SO4 SO4 . QA 5 EDO F 1 205 3 EDO EDO . RA 7 HOH A 1 301 94 HOH HOH . RA 7 HOH A 2 302 67 HOH HOH . RA 7 HOH A 3 303 50 HOH HOH . RA 7 HOH A 4 304 56 HOH HOH . RA 7 HOH A 5 305 4 HOH HOH . RA 7 HOH A 6 306 39 HOH HOH . RA 7 HOH A 7 307 3 HOH HOH . RA 7 HOH A 8 308 62 HOH HOH . RA 7 HOH A 9 309 43 HOH HOH . RA 7 HOH A 10 310 5 HOH HOH . RA 7 HOH A 11 311 53 HOH HOH . RA 7 HOH A 12 312 60 HOH HOH . RA 7 HOH A 13 313 86 HOH HOH . RA 7 HOH A 14 314 9 HOH HOH . RA 7 HOH A 15 315 2 HOH HOH . SA 7 HOH B 1 301 58 HOH HOH . SA 7 HOH B 2 302 42 HOH HOH . SA 7 HOH B 3 303 7 HOH HOH . SA 7 HOH B 4 304 14 HOH HOH . SA 7 HOH B 5 305 24 HOH HOH . TA 7 HOH C 1 301 65 HOH HOH . TA 7 HOH C 2 302 72 HOH HOH . TA 7 HOH C 3 303 44 HOH HOH . TA 7 HOH C 4 304 71 HOH HOH . TA 7 HOH C 5 305 59 HOH HOH . TA 7 HOH C 6 306 34 HOH HOH . TA 7 HOH C 7 307 23 HOH HOH . TA 7 HOH C 8 308 96 HOH HOH . TA 7 HOH C 9 309 69 HOH HOH . TA 7 HOH C 10 310 57 HOH HOH . TA 7 HOH C 11 311 85 HOH HOH . TA 7 HOH C 12 312 6 HOH HOH . TA 7 HOH C 13 313 95 HOH HOH . TA 7 HOH C 14 314 40 HOH HOH . UA 7 HOH D 1 301 90 HOH HOH . UA 7 HOH D 2 302 98 HOH HOH . UA 7 HOH D 3 303 93 HOH HOH . UA 7 HOH D 4 304 37 HOH HOH . UA 7 HOH D 5 305 92 HOH HOH . UA 7 HOH D 6 306 91 HOH HOH . UA 7 HOH D 7 307 66 HOH HOH . UA 7 HOH D 8 308 84 HOH HOH . UA 7 HOH D 9 309 35 HOH HOH . UA 7 HOH D 10 310 38 HOH HOH . UA 7 HOH D 11 311 46 HOH HOH . UA 7 HOH D 12 312 89 HOH HOH . VA 7 HOH E 1 301 29 HOH HOH . VA 7 HOH E 2 302 61 HOH HOH . VA 7 HOH E 3 303 49 HOH HOH . VA 7 HOH E 4 304 55 HOH HOH . VA 7 HOH E 5 305 78 HOH HOH . VA 7 HOH E 6 306 21 HOH HOH . VA 7 HOH E 7 307 70 HOH HOH . VA 7 HOH E 8 308 79 HOH HOH . VA 7 HOH E 9 309 28 HOH HOH . VA 7 HOH E 10 310 80 HOH HOH . VA 7 HOH E 11 311 48 HOH HOH . VA 7 HOH E 12 312 51 HOH HOH . VA 7 HOH E 13 313 77 HOH HOH . VA 7 HOH E 14 314 82 HOH HOH . VA 7 HOH E 15 315 52 HOH HOH . WA 7 HOH F 1 301 64 HOH HOH . WA 7 HOH F 2 302 87 HOH HOH . WA 7 HOH F 3 303 88 HOH HOH . WA 7 HOH F 4 304 25 HOH HOH . WA 7 HOH F 5 305 45 HOH HOH . WA 7 HOH F 6 306 54 HOH HOH . WA 7 HOH F 7 307 81 HOH HOH . WA 7 HOH F 8 308 33 HOH HOH . WA 7 HOH F 9 309 97 HOH HOH . WA 7 HOH F 10 310 63 HOH HOH . WA 7 HOH F 11 311 68 HOH HOH . WA 7 HOH F 12 312 31 HOH HOH . WA 7 HOH F 13 313 99 HOH HOH . WA 7 HOH F 14 314 41 HOH HOH . WA 7 HOH F 15 315 36 HOH HOH . WA 7 HOH F 16 316 83 HOH HOH . WA 7 HOH F 17 317 16 HOH HOH . WA 7 HOH F 18 318 73 HOH HOH . WA 7 HOH F 19 319 30 HOH HOH . WA 7 HOH F 20 320 32 HOH HOH . WA 7 HOH F 21 321 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 PSF . . . U 6 -19.419 26.47 9.235 1 100.33 ? O2 PSF 204 B 1 HETATM 2 O O1 PSF . . . U 6 -17.708 26.774 7.299 1 87.15 ? O1 PSF 204 B 1 HETATM 3 P P PSF . . . U 6 -19.242 27.109 7.758 1 127.79 ? P PSF 204 B 1 HETATM 4 O O4 PSF . . . U 6 -19.626 28.602 7.662 1 74.75 ? O4 PSF 204 B 1 HETATM 5 O O3 PSF . . . U 6 -20.115 26.092 7.088 1 134.9 ? O3 PSF 204 B 1 HETATM 6 C C2 PSF . . . U 6 -20.689 26.024 9.72 1 76.63 ? C2 PSF 204 B 1 HETATM 7 C C3 PSF . . . U 6 -20.481 26.182 11.195 1 95.36 ? C3 PSF 204 B 1 HETATM 8 O O11 PSF . . . U 6 -19.446 25.217 11.496 1 97.35 ? O11 PSF 204 B 1 HETATM 9 O O12 PSF . . . U 6 -17.262 25.625 10.752 1 47.19 ? O12 PSF 204 B 1 HETATM 10 C C1 PSF . . . U 6 -18.054 25.689 11.702 1 81.54 ? C1 PSF 204 B 1 HETATM 11 C C4 PSF . . . U 6 -21.828 26.005 11.908 1 97.95 ? C4 PSF 204 B 1 HETATM 12 C C5 PSF . . . U 6 -22.161 25.727 14.475 1 85.44 ? C5 PSF 204 B 1 HETATM 13 O O51 PSF . . . U 6 -21.877 26.263 15.555 1 102.38 ? O51 PSF 204 B 1 HETATM 14 O O52 PSF . . . U 6 -21.802 26.494 13.262 1 99.76 ? O52 PSF 204 B 1 HETATM 15 C C6 PSF . . . U 6 -22.838 24.339 14.472 1 62.7 ? C6 PSF 204 B 1 HETATM 16 C C7 PSF . . . U 6 -24.352 24.407 14.447 1 42.98 ? C7 PSF 204 B 1 HETATM 17 C C13 PSF . . . U 6 -17.666 26.245 13.086 1 78.75 ? C13 PSF 204 B 1 HETATM 18 C C14 PSF . . . U 6 -17.614 25.206 14.227 1 70.25 ? C14 PSF 204 B 1 HETATM 19 C C15 PSF . . . U 6 -18.357 25.633 15.501 1 64.78 ? C15 PSF 204 B 1 HETATM 20 N N PSF . . . U 6 -15.882 24.314 6.935 1 33.16 ? N PSF 204 B 1 HETATM 21 C CA PSF . . . U 6 -17.246 24.457 6.557 1 62.5 ? CA PSF 204 B 1 HETATM 22 C CB PSF . . . U 6 -17.375 25.936 6.166 1 83.19 ? CB PSF 204 B 1 HETATM 23 C C PSF . . . U 6 -17.874 23.436 5.531 1 79.61 ? C PSF 204 B 1 HETATM 24 O OT1 PSF . . . U 6 -17.462 22.289 5.146 1 75.76 ? OT1 PSF 204 B 1 HETATM 25 O OT2 PSF . . . U 6 -18.984 23.724 5.048 1 87.37 ? OT2 PSF 204 B 1 HETATM 26 C C8 PSF . . . U 6 -24.914 23.343 15.269 1 34.37 ? C8 PSF 204 B 1 HETATM 27 C C9 PSF . . . U 6 -26.403 23.53 15.392 1 42.15 ? C9 PSF 204 B 1 HETATM 28 C C10 PSF . . . U 6 -27.152 24.247 14.282 1 47.52 ? C10 PSF 204 B 1 HETATM 29 C C16 PSF . . . U 6 -18.558 24.556 16.579 1 61.18 ? C16 PSF 204 B 1 HETATM 30 C C17 PSF . . . U 6 -20.014 24.141 16.759 1 55.25 ? C17 PSF 204 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #