data_6B8S # _model_server_result.job_id UkJmtAavjwfRE9gUYy6EmA _model_server_result.datetime_utc '2025-07-31 14:47:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b8s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6B8S # _exptl.entry_id 6B8S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.06 _cell.angle_gamma 90 _cell.entry_id 6B8S _cell.length_a 49.44 _cell.length_b 69.08 _cell.length_c 100.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B8S _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6B8S _atom_sites.fract_transf_matrix[1][1] 0.020227 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002862 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014476 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 401 400 FMN FMN . D 3 PGE A 1 402 2 PGE PGE . E 2 FMN B 1 401 400 FMN FMN . F 3 PGE B 1 402 1 PGE PGE . G 4 HOH A 1 501 36 HOH HOH . G 4 HOH A 2 502 19 HOH HOH . G 4 HOH A 3 503 109 HOH HOH . G 4 HOH A 4 504 4 HOH HOH . G 4 HOH A 5 505 41 HOH HOH . G 4 HOH A 6 506 40 HOH HOH . G 4 HOH A 7 507 6 HOH HOH . G 4 HOH A 8 508 31 HOH HOH . G 4 HOH A 9 509 11 HOH HOH . G 4 HOH A 10 510 14 HOH HOH . G 4 HOH A 11 511 34 HOH HOH . G 4 HOH A 12 512 113 HOH HOH . G 4 HOH A 13 513 84 HOH HOH . G 4 HOH A 14 514 32 HOH HOH . G 4 HOH A 15 515 48 HOH HOH . G 4 HOH A 16 516 72 HOH HOH . G 4 HOH A 17 517 18 HOH HOH . G 4 HOH A 18 518 82 HOH HOH . G 4 HOH A 19 519 39 HOH HOH . G 4 HOH A 20 520 30 HOH HOH . G 4 HOH A 21 521 44 HOH HOH . G 4 HOH A 22 522 63 HOH HOH . G 4 HOH A 23 523 42 HOH HOH . G 4 HOH A 24 524 25 HOH HOH . G 4 HOH A 25 525 79 HOH HOH . G 4 HOH A 26 526 66 HOH HOH . G 4 HOH A 27 527 76 HOH HOH . G 4 HOH A 28 528 3 HOH HOH . G 4 HOH A 29 529 37 HOH HOH . G 4 HOH A 30 530 26 HOH HOH . G 4 HOH A 31 531 7 HOH HOH . G 4 HOH A 32 532 117 HOH HOH . G 4 HOH A 33 533 21 HOH HOH . G 4 HOH A 34 534 110 HOH HOH . G 4 HOH A 35 535 13 HOH HOH . G 4 HOH A 36 536 45 HOH HOH . G 4 HOH A 37 537 114 HOH HOH . G 4 HOH A 38 538 46 HOH HOH . G 4 HOH A 39 539 103 HOH HOH . G 4 HOH A 40 540 111 HOH HOH . G 4 HOH A 41 541 23 HOH HOH . G 4 HOH A 42 542 115 HOH HOH . G 4 HOH A 43 543 17 HOH HOH . G 4 HOH A 44 544 75 HOH HOH . G 4 HOH A 45 545 70 HOH HOH . G 4 HOH A 46 546 81 HOH HOH . G 4 HOH A 47 547 2 HOH HOH . G 4 HOH A 48 548 35 HOH HOH . G 4 HOH A 49 549 24 HOH HOH . G 4 HOH A 50 550 38 HOH HOH . G 4 HOH A 51 551 47 HOH HOH . G 4 HOH A 52 552 22 HOH HOH . G 4 HOH A 53 553 77 HOH HOH . G 4 HOH A 54 554 74 HOH HOH . G 4 HOH A 55 555 43 HOH HOH . G 4 HOH A 56 556 67 HOH HOH . G 4 HOH A 57 557 94 HOH HOH . G 4 HOH A 58 558 102 HOH HOH . G 4 HOH A 59 559 20 HOH HOH . G 4 HOH A 60 560 116 HOH HOH . G 4 HOH A 61 561 71 HOH HOH . G 4 HOH A 62 562 112 HOH HOH . G 4 HOH A 63 563 80 HOH HOH . G 4 HOH A 64 564 95 HOH HOH . G 4 HOH A 65 565 78 HOH HOH . G 4 HOH A 66 566 73 HOH HOH . G 4 HOH A 67 567 33 HOH HOH . G 4 HOH A 68 568 68 HOH HOH . G 4 HOH A 69 569 83 HOH HOH . H 4 HOH B 1 501 106 HOH HOH . H 4 HOH B 2 502 12 HOH HOH . H 4 HOH B 3 503 50 HOH HOH . H 4 HOH B 4 504 54 HOH HOH . H 4 HOH B 5 505 53 HOH HOH . H 4 HOH B 6 506 58 HOH HOH . H 4 HOH B 7 507 86 HOH HOH . H 4 HOH B 8 508 60 HOH HOH . H 4 HOH B 9 509 61 HOH HOH . H 4 HOH B 10 510 87 HOH HOH . H 4 HOH B 11 511 92 HOH HOH . H 4 HOH B 12 512 9 HOH HOH . H 4 HOH B 13 513 59 HOH HOH . H 4 HOH B 14 514 89 HOH HOH . H 4 HOH B 15 515 90 HOH HOH . H 4 HOH B 16 516 8 HOH HOH . H 4 HOH B 17 517 1 HOH HOH . H 4 HOH B 18 518 10 HOH HOH . H 4 HOH B 19 519 88 HOH HOH . H 4 HOH B 20 520 27 HOH HOH . H 4 HOH B 21 521 96 HOH HOH . H 4 HOH B 22 522 101 HOH HOH . H 4 HOH B 23 523 64 HOH HOH . H 4 HOH B 24 524 104 HOH HOH . H 4 HOH B 25 525 28 HOH HOH . H 4 HOH B 26 526 62 HOH HOH . H 4 HOH B 27 527 15 HOH HOH . H 4 HOH B 28 528 105 HOH HOH . H 4 HOH B 29 529 49 HOH HOH . H 4 HOH B 30 530 51 HOH HOH . H 4 HOH B 31 531 69 HOH HOH . H 4 HOH B 32 532 29 HOH HOH . H 4 HOH B 33 533 97 HOH HOH . H 4 HOH B 34 534 52 HOH HOH . H 4 HOH B 35 535 91 HOH HOH . H 4 HOH B 36 536 56 HOH HOH . H 4 HOH B 37 537 85 HOH HOH . H 4 HOH B 38 538 108 HOH HOH . H 4 HOH B 39 539 65 HOH HOH . H 4 HOH B 40 540 93 HOH HOH . H 4 HOH B 41 541 16 HOH HOH . H 4 HOH B 42 542 98 HOH HOH . H 4 HOH B 43 543 57 HOH HOH . H 4 HOH B 44 544 100 HOH HOH . H 4 HOH B 45 545 99 HOH HOH . H 4 HOH B 46 546 55 HOH HOH . H 4 HOH B 47 547 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 12.53 -5.222 8.008 1 37.74 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . C 2 12.042 -5.342 6.727 1 37.24 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . C 2 11.903 -4.341 6.027 1 33.72 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . C 2 11.701 -6.585 6.24 1 37.34 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . C 2 11.87 -7.718 7.01 1 39.14 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . C 2 11.555 -8.829 6.57 1 41.71 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . C 2 12.379 -7.594 8.292 1 39.39 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . C 2 12.542 -8.703 9.089 1 41.9 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . C 2 13.018 -8.569 10.377 1 41.41 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . C 2 13.172 -9.701 11.171 1 37.44 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . C 2 13.654 -9.591 12.469 1 36.36 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . C 2 13.812 -10.839 13.293 1 30.32 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . C 2 13.983 -8.337 12.978 1 42.8 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . C 2 14.518 -8.186 14.384 1 43.52 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . C 2 13.825 -7.207 12.178 1 32.08 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . C 2 13.35 -7.318 10.875 1 36.63 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . C 2 13.172 -6.207 10.072 1 35.78 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . C 2 12.689 -6.342 8.792 1 42.06 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . C 2 13.517 -4.83 10.539 1 30.46 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . C 2 12.409 -4.217 11.381 1 31.43 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . C 2 11.267 -4.057 10.556 1 30.96 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . C 2 12.93 -2.888 11.944 1 34.37 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . C 2 13.389 -2.112 10.863 1 33.95 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . C 2 14.139 -3.062 12.889 1 36.23 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . C 2 13.966 -4.222 13.675 1 39.21 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . C 2 14.398 -1.846 13.804 1 33.93 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . C 2 13.253 -1.606 14.607 1 38.64 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . C 2 13.222 -2.033 16.157 1 38.04 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . C 2 11.934 -1.501 16.753 1 35.9 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . C 2 13.295 -3.538 16.209 1 34.58 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . C 2 14.398 -1.431 16.931 1 34.8 ? O3P FMN 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #