data_6B8T # _model_server_result.job_id N9V_Sj3qfj2fh-6wxlpHeA _model_server_result.datetime_utc '2024-11-07 19:17:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b8t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6B8T # _exptl.entry_id 6B8T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6B8T _cell.length_a 89.44 _cell.length_b 89.44 _cell.length_c 106 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B8T _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 347 n n C C2 TRS sing 348 n n C C3 TRS sing 349 n n C N TRS sing 350 n n C1 O1 TRS sing 351 n n C1 H11 TRS sing 352 n n C1 H12 TRS sing 353 n n C2 O2 TRS sing 354 n n C2 H21 TRS sing 355 n n C2 H22 TRS sing 356 n n C3 O3 TRS sing 357 n n C3 H31 TRS sing 358 n n C3 H32 TRS sing 359 n n N HN1 TRS sing 360 n n N HN2 TRS sing 361 n n N HN3 TRS sing 362 n n O1 HO1 TRS sing 363 n n O2 HO2 TRS sing 364 n n O3 HO3 TRS sing 365 n n # _atom_sites.entry_id 6B8T _atom_sites.fract_transf_matrix[1][1] 0.011181 _atom_sites.fract_transf_matrix[1][2] 0.006455 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 403 GOL GOL . C 2 GOL A 1 302 406 GOL GOL . D 2 GOL A 1 303 407 GOL GOL . E 3 TRS A 1 304 500 TRS TRS . F 4 HOH A 1 401 317 HOH HOH . F 4 HOH A 2 402 315 HOH HOH . F 4 HOH A 3 403 314 HOH HOH . F 4 HOH A 4 404 203 HOH HOH . F 4 HOH A 5 405 219 HOH HOH . F 4 HOH A 6 406 229 HOH HOH . F 4 HOH A 7 407 187 HOH HOH . F 4 HOH A 8 408 162 HOH HOH . F 4 HOH A 9 409 85 HOH HOH . F 4 HOH A 10 410 279 HOH HOH . F 4 HOH A 11 411 216 HOH HOH . F 4 HOH A 12 412 309 HOH HOH . F 4 HOH A 13 413 256 HOH HOH . F 4 HOH A 14 414 264 HOH HOH . F 4 HOH A 15 415 181 HOH HOH . F 4 HOH A 16 416 98 HOH HOH . F 4 HOH A 17 417 88 HOH HOH . F 4 HOH A 18 418 135 HOH HOH . F 4 HOH A 19 419 306 HOH HOH . F 4 HOH A 20 420 253 HOH HOH . F 4 HOH A 21 421 150 HOH HOH . F 4 HOH A 22 422 269 HOH HOH . F 4 HOH A 23 423 304 HOH HOH . F 4 HOH A 24 424 160 HOH HOH . F 4 HOH A 25 425 239 HOH HOH . F 4 HOH A 26 426 280 HOH HOH . F 4 HOH A 27 427 167 HOH HOH . F 4 HOH A 28 428 5 HOH HOH . F 4 HOH A 29 429 15 HOH HOH . F 4 HOH A 30 430 310 HOH HOH . F 4 HOH A 31 431 105 HOH HOH . F 4 HOH A 32 432 40 HOH HOH . F 4 HOH A 33 433 155 HOH HOH . F 4 HOH A 34 434 90 HOH HOH . F 4 HOH A 35 435 46 HOH HOH . F 4 HOH A 36 436 325 HOH HOH . F 4 HOH A 37 437 305 HOH HOH . F 4 HOH A 38 438 188 HOH HOH . F 4 HOH A 39 439 301 HOH HOH . F 4 HOH A 40 440 252 HOH HOH . F 4 HOH A 41 441 262 HOH HOH . F 4 HOH A 42 442 37 HOH HOH . F 4 HOH A 43 443 249 HOH HOH . F 4 HOH A 44 444 316 HOH HOH . F 4 HOH A 45 445 189 HOH HOH . F 4 HOH A 46 446 152 HOH HOH . F 4 HOH A 47 447 14 HOH HOH . F 4 HOH A 48 448 259 HOH HOH . F 4 HOH A 49 449 65 HOH HOH . F 4 HOH A 50 450 204 HOH HOH . F 4 HOH A 51 451 312 HOH HOH . F 4 HOH A 52 452 35 HOH HOH . F 4 HOH A 53 453 79 HOH HOH . F 4 HOH A 54 454 1 HOH HOH . F 4 HOH A 55 455 3 HOH HOH . F 4 HOH A 56 456 9 HOH HOH . F 4 HOH A 57 457 81 HOH HOH . F 4 HOH A 58 458 55 HOH HOH . F 4 HOH A 59 459 27 HOH HOH . F 4 HOH A 60 460 60 HOH HOH . F 4 HOH A 61 461 4 HOH HOH . F 4 HOH A 62 462 21 HOH HOH . F 4 HOH A 63 463 30 HOH HOH . F 4 HOH A 64 464 295 HOH HOH . F 4 HOH A 65 465 102 HOH HOH . F 4 HOH A 66 466 291 HOH HOH . F 4 HOH A 67 467 29 HOH HOH . F 4 HOH A 68 468 33 HOH HOH . F 4 HOH A 69 469 8 HOH HOH . F 4 HOH A 70 470 134 HOH HOH . F 4 HOH A 71 471 24 HOH HOH . F 4 HOH A 72 472 296 HOH HOH . F 4 HOH A 73 473 285 HOH HOH . F 4 HOH A 74 474 68 HOH HOH . F 4 HOH A 75 475 183 HOH HOH . F 4 HOH A 76 476 2 HOH HOH . F 4 HOH A 77 477 25 HOH HOH . F 4 HOH A 78 478 136 HOH HOH . F 4 HOH A 79 479 18 HOH HOH . F 4 HOH A 80 480 247 HOH HOH . F 4 HOH A 81 481 288 HOH HOH . F 4 HOH A 82 482 12 HOH HOH . F 4 HOH A 83 483 180 HOH HOH . F 4 HOH A 84 484 6 HOH HOH . F 4 HOH A 85 485 89 HOH HOH . F 4 HOH A 86 486 28 HOH HOH . F 4 HOH A 87 487 293 HOH HOH . F 4 HOH A 88 488 122 HOH HOH . F 4 HOH A 89 489 22 HOH HOH . F 4 HOH A 90 490 292 HOH HOH . F 4 HOH A 91 491 43 HOH HOH . F 4 HOH A 92 492 185 HOH HOH . F 4 HOH A 93 493 17 HOH HOH . F 4 HOH A 94 494 47 HOH HOH . F 4 HOH A 95 495 250 HOH HOH . F 4 HOH A 96 496 71 HOH HOH . F 4 HOH A 97 497 86 HOH HOH . F 4 HOH A 98 498 294 HOH HOH . F 4 HOH A 99 499 11 HOH HOH . F 4 HOH A 100 500 72 HOH HOH . F 4 HOH A 101 501 302 HOH HOH . F 4 HOH A 102 502 19 HOH HOH . F 4 HOH A 103 503 303 HOH HOH . F 4 HOH A 104 504 307 HOH HOH . F 4 HOH A 105 505 195 HOH HOH . F 4 HOH A 106 506 91 HOH HOH . F 4 HOH A 107 507 20 HOH HOH . F 4 HOH A 108 508 16 HOH HOH . F 4 HOH A 109 509 284 HOH HOH . F 4 HOH A 110 510 324 HOH HOH . F 4 HOH A 111 511 7 HOH HOH . F 4 HOH A 112 512 34 HOH HOH . F 4 HOH A 113 513 281 HOH HOH . F 4 HOH A 114 514 137 HOH HOH . F 4 HOH A 115 515 290 HOH HOH . F 4 HOH A 116 516 113 HOH HOH . F 4 HOH A 117 517 299 HOH HOH . F 4 HOH A 118 518 23 HOH HOH . F 4 HOH A 119 519 87 HOH HOH . F 4 HOH A 120 520 149 HOH HOH . F 4 HOH A 121 521 63 HOH HOH . F 4 HOH A 122 522 13 HOH HOH . F 4 HOH A 123 523 70 HOH HOH . F 4 HOH A 124 524 78 HOH HOH . F 4 HOH A 125 525 31 HOH HOH . F 4 HOH A 126 526 131 HOH HOH . F 4 HOH A 127 527 10 HOH HOH . F 4 HOH A 128 528 41 HOH HOH . F 4 HOH A 129 529 237 HOH HOH . F 4 HOH A 130 530 234 HOH HOH . F 4 HOH A 131 531 62 HOH HOH . F 4 HOH A 132 532 73 HOH HOH . F 4 HOH A 133 533 286 HOH HOH . F 4 HOH A 134 534 139 HOH HOH . F 4 HOH A 135 535 240 HOH HOH . F 4 HOH A 136 536 32 HOH HOH . F 4 HOH A 137 537 172 HOH HOH . F 4 HOH A 138 538 323 HOH HOH . F 4 HOH A 139 539 176 HOH HOH . F 4 HOH A 140 540 130 HOH HOH . F 4 HOH A 141 541 57 HOH HOH . F 4 HOH A 142 542 169 HOH HOH . F 4 HOH A 143 543 94 HOH HOH . F 4 HOH A 144 544 69 HOH HOH . F 4 HOH A 145 545 214 HOH HOH . F 4 HOH A 146 546 67 HOH HOH . F 4 HOH A 147 547 159 HOH HOH . F 4 HOH A 148 548 228 HOH HOH . F 4 HOH A 149 549 257 HOH HOH . F 4 HOH A 150 550 44 HOH HOH . F 4 HOH A 151 551 26 HOH HOH . F 4 HOH A 152 552 95 HOH HOH . F 4 HOH A 153 553 127 HOH HOH . F 4 HOH A 154 554 318 HOH HOH . F 4 HOH A 155 555 119 HOH HOH . F 4 HOH A 156 556 64 HOH HOH . F 4 HOH A 157 557 54 HOH HOH . F 4 HOH A 158 558 322 HOH HOH . F 4 HOH A 159 559 106 HOH HOH . F 4 HOH A 160 560 144 HOH HOH . F 4 HOH A 161 561 201 HOH HOH . F 4 HOH A 162 562 242 HOH HOH . F 4 HOH A 163 563 116 HOH HOH . F 4 HOH A 164 564 82 HOH HOH . F 4 HOH A 165 565 83 HOH HOH . F 4 HOH A 166 566 171 HOH HOH . F 4 HOH A 167 567 196 HOH HOH . F 4 HOH A 168 568 59 HOH HOH . F 4 HOH A 169 569 36 HOH HOH . F 4 HOH A 170 570 300 HOH HOH . F 4 HOH A 171 571 117 HOH HOH . F 4 HOH A 172 572 174 HOH HOH . F 4 HOH A 173 573 246 HOH HOH . F 4 HOH A 174 574 177 HOH HOH . F 4 HOH A 175 575 238 HOH HOH . F 4 HOH A 176 576 114 HOH HOH . F 4 HOH A 177 577 287 HOH HOH . F 4 HOH A 178 578 227 HOH HOH . F 4 HOH A 179 579 77 HOH HOH . F 4 HOH A 180 580 123 HOH HOH . F 4 HOH A 181 581 258 HOH HOH . F 4 HOH A 182 582 230 HOH HOH . F 4 HOH A 183 583 289 HOH HOH . F 4 HOH A 184 584 261 HOH HOH . F 4 HOH A 185 585 84 HOH HOH . F 4 HOH A 186 586 278 HOH HOH . F 4 HOH A 187 587 218 HOH HOH . F 4 HOH A 188 588 235 HOH HOH . F 4 HOH A 189 589 145 HOH HOH . F 4 HOH A 190 590 248 HOH HOH . F 4 HOH A 191 591 97 HOH HOH . F 4 HOH A 192 592 104 HOH HOH . F 4 HOH A 193 593 210 HOH HOH . F 4 HOH A 194 594 80 HOH HOH . F 4 HOH A 195 595 283 HOH HOH . F 4 HOH A 196 596 311 HOH HOH . F 4 HOH A 197 597 282 HOH HOH . F 4 HOH A 198 598 92 HOH HOH . F 4 HOH A 199 599 231 HOH HOH . F 4 HOH A 200 600 213 HOH HOH . F 4 HOH A 201 601 319 HOH HOH . F 4 HOH A 202 602 142 HOH HOH . F 4 HOH A 203 603 121 HOH HOH . F 4 HOH A 204 604 260 HOH HOH . F 4 HOH A 205 605 103 HOH HOH . F 4 HOH A 206 606 124 HOH HOH . F 4 HOH A 207 607 321 HOH HOH . F 4 HOH A 208 608 52 HOH HOH . F 4 HOH A 209 609 209 HOH HOH . F 4 HOH A 210 610 148 HOH HOH . F 4 HOH A 211 611 271 HOH HOH . F 4 HOH A 212 612 320 HOH HOH . F 4 HOH A 213 613 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . A . E 3 45.329 -2.365 -4.496 0.5 31.34 ? C TRS 304 A 1 HETATM 2 C C TRS . B . E 3 45.705 -1.198 -4.777 0.5 51.11 ? C TRS 304 A 1 HETATM 3 C C1 TRS . A . E 3 45.78 -3.769 -4.887 0.5 52 ? C1 TRS 304 A 1 HETATM 4 C C1 TRS . B . E 3 44.918 -0.775 -3.541 0.5 31.14 ? C1 TRS 304 A 1 HETATM 5 C C2 TRS . A . E 3 45.073 -1.535 -5.747 0.5 47.2 ? C2 TRS 304 A 1 HETATM 6 C C2 TRS . B . E 3 44.783 -1.239 -6.001 0.5 49.13 ? C2 TRS 304 A 1 HETATM 7 C C3 TRS . A . E 3 46.382 -1.657 -3.657 0.5 42.08 ? C3 TRS 304 A 1 HETATM 8 C C3 TRS . B . E 3 46.279 -2.58 -4.568 0.5 32.57 ? C3 TRS 304 A 1 HETATM 9 N N TRS . A . E 3 44.1 -2.51 -3.7 0.5 28.03 ? N TRS 304 A 1 HETATM 10 N N TRS . B . E 3 46.83 -0.282 -5.015 0.5 43.12 ? N TRS 304 A 1 HETATM 11 O O1 TRS . A . E 3 45.397 -4.645 -3.846 0.5 47.05 ? O1 TRS 304 A 1 HETATM 12 O O1 TRS . B . E 3 44.911 0.625 -3.424 0.5 34.79 ? O1 TRS 304 A 1 HETATM 13 O O2 TRS . A . E 3 44.065 -2.093 -6.545 0.5 43.94 ? O2 TRS 304 A 1 HETATM 14 O O2 TRS . B . E 3 43.9 -0.145 -5.964 0.5 57.33 ? O2 TRS 304 A 1 HETATM 15 O O3 TRS . A . E 3 47.098 -2.566 -2.847 0.5 30.06 ? O3 TRS 304 A 1 HETATM 16 O O3 TRS . B . E 3 47.067 -2.635 -3.389 0.5 36.53 ? O3 TRS 304 A 1 HETATM 17 H H11 TRS . A . E 3 46.862 -3.793 -5.019 0.5 62.4 ? H11 TRS 304 A 1 HETATM 18 H H11 TRS . B . E 3 45.37 -1.215 -2.652 0.5 37.38 ? H11 TRS 304 A 1 HETATM 19 H H12 TRS . A . E 3 45.309 -4.069 -5.823 0.5 62.4 ? H12 TRS 304 A 1 HETATM 20 H H12 TRS . B . E 3 43.894 -1.141 -3.616 0.5 37.38 ? H12 TRS 304 A 1 HETATM 21 H H21 TRS . A . E 3 45.993 -1.464 -6.327 0.5 56.65 ? H21 TRS 304 A 1 HETATM 22 H H21 TRS . B . E 3 44.217 -2.17 -6.004 0.5 58.97 ? H21 TRS 304 A 1 HETATM 23 H H22 TRS . A . E 3 44.785 -0.525 -5.456 0.5 56.65 ? H22 TRS 304 A 1 HETATM 24 H H22 TRS . B . E 3 45.38 -1.2 -6.912 0.5 58.97 ? H22 TRS 304 A 1 HETATM 25 H H31 TRS . A . E 3 45.899 -0.913 -3.024 0.5 50.5 ? H31 TRS 304 A 1 HETATM 26 H H31 TRS . B . E 3 46.893 -2.851 -5.427 0.5 39.09 ? H31 TRS 304 A 1 HETATM 27 H H32 TRS . A . E 3 47.077 -1.134 -4.314 0.5 50.5 ? H32 TRS 304 A 1 HETATM 28 H H32 TRS . B . E 3 45.467 -3.303 -4.496 0.5 39.09 ? H32 TRS 304 A 1 HETATM 29 H HN1 TRS . A . E 3 44.223 -3.048 -2.848 0.5 33.64 ? HN1 TRS 304 A 1 HETATM 30 H HN1 TRS . B . E 3 47.494 -0.238 -4.247 0.5 51.75 ? HN1 TRS 304 A 1 HETATM 31 H HN2 TRS . A . E 3 43.287 -2.783 -4.244 0.5 33.64 ? HN2 TRS 304 A 1 HETATM 32 H HN2 TRS . B . E 3 46.552 0.628 -5.369 0.5 51.75 ? HN2 TRS 304 A 1 HETATM 33 H HN3 TRS . A . E 3 43.891 -1.576 -3.382 0.5 33.64 ? HN3 TRS 304 A 1 HETATM 34 H HN3 TRS . B . E 3 47.346 -0.704 -5.772 0.5 51.75 ? HN3 TRS 304 A 1 HETATM 35 H HO1 TRS . A . E 3 45.674 -5.558 -4.068 0.5 56.47 ? HO1 TRS 304 A 1 HETATM 36 H HO1 TRS . B . E 3 44.404 0.884 -2.627 0.5 41.76 ? HO1 TRS 304 A 1 HETATM 37 H HO2 TRS . A . E 3 43.928 -1.534 -7.338 0.5 52.73 ? HO2 TRS 304 A 1 HETATM 38 H HO2 TRS . B . E 3 43.313 -0.174 -6.748 0.5 68.8 ? HO2 TRS 304 A 1 HETATM 39 H HO3 TRS . A . E 3 47.766 -2.079 -2.321 0.5 36.07 ? HO3 TRS 304 A 1 HETATM 40 H HO3 TRS . B . E 3 47.07 -1.756 -2.957 0.5 43.84 ? HO3 TRS 304 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 40 #