data_6B8X
#
_model_server_result.job_id            s12xIF78OruwN-o9GKZ7Yg 
_model_server_result.datetime_utc      '2025-07-01 20:38:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6b8x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    6B8X 
#
_exptl.entry_id    6B8X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6B8X 
_cell.length_a            89.52 
_cell.length_b            89.52 
_cell.length_c            106.25 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6B8X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6B8X 
_atom_sites.fract_transf_matrix[1][1]    0.011171 
_atom_sites.fract_transf_matrix[1][2]    0.006449 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012899 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009412 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 301 403 GOL GOL . 
C 2 GOL A 1 302 404 GOL GOL . 
D 2 GOL A 1 303 405 GOL GOL . 
E 2 GOL A 1 304 406 GOL GOL . 
F 3 HOH A 1 401 229 HOH HOH . 
F 3 HOH A 2 402 249 HOH HOH . 
F 3 HOH A 3 403 98 HOH HOH . 
F 3 HOH A 4 404 128 HOH HOH . 
F 3 HOH A 5 405 105 HOH HOH . 
F 3 HOH A 6 406 80 HOH HOH . 
F 3 HOH A 7 407 61 HOH HOH . 
F 3 HOH A 8 408 256 HOH HOH . 
F 3 HOH A 9 409 41 HOH HOH . 
F 3 HOH A 10 410 230 HOH HOH . 
F 3 HOH A 11 411 235 HOH HOH . 
F 3 HOH A 12 412 5 HOH HOH . 
F 3 HOH A 13 413 35 HOH HOH . 
F 3 HOH A 14 414 258 HOH HOH . 
F 3 HOH A 15 415 248 HOH HOH . 
F 3 HOH A 16 416 212 HOH HOH . 
F 3 HOH A 17 417 118 HOH HOH . 
F 3 HOH A 18 418 189 HOH HOH . 
F 3 HOH A 19 419 160 HOH HOH . 
F 3 HOH A 20 420 93 HOH HOH . 
F 3 HOH A 21 421 48 HOH HOH . 
F 3 HOH A 22 422 216 HOH HOH . 
F 3 HOH A 23 423 3 HOH HOH . 
F 3 HOH A 24 424 172 HOH HOH . 
F 3 HOH A 25 425 40 HOH HOH . 
F 3 HOH A 26 426 157 HOH HOH . 
F 3 HOH A 27 427 2 HOH HOH . 
F 3 HOH A 28 428 114 HOH HOH . 
F 3 HOH A 29 429 233 HOH HOH . 
F 3 HOH A 30 430 195 HOH HOH . 
F 3 HOH A 31 431 47 HOH HOH . 
F 3 HOH A 32 432 19 HOH HOH . 
F 3 HOH A 33 433 71 HOH HOH . 
F 3 HOH A 34 434 198 HOH HOH . 
F 3 HOH A 35 435 176 HOH HOH . 
F 3 HOH A 36 436 55 HOH HOH . 
F 3 HOH A 37 437 15 HOH HOH . 
F 3 HOH A 38 438 174 HOH HOH . 
F 3 HOH A 39 439 38 HOH HOH . 
F 3 HOH A 40 440 50 HOH HOH . 
F 3 HOH A 41 441 207 HOH HOH . 
F 3 HOH A 42 442 4 HOH HOH . 
F 3 HOH A 43 443 18 HOH HOH . 
F 3 HOH A 44 444 29 HOH HOH . 
F 3 HOH A 45 445 110 HOH HOH . 
F 3 HOH A 46 446 46 HOH HOH . 
F 3 HOH A 47 447 173 HOH HOH . 
F 3 HOH A 48 448 188 HOH HOH . 
F 3 HOH A 49 449 8 HOH HOH . 
F 3 HOH A 50 450 181 HOH HOH . 
F 3 HOH A 51 451 1 HOH HOH . 
F 3 HOH A 52 452 85 HOH HOH . 
F 3 HOH A 53 453 97 HOH HOH . 
F 3 HOH A 54 454 9 HOH HOH . 
F 3 HOH A 55 455 21 HOH HOH . 
F 3 HOH A 56 456 113 HOH HOH . 
F 3 HOH A 57 457 99 HOH HOH . 
F 3 HOH A 58 458 91 HOH HOH . 
F 3 HOH A 59 459 42 HOH HOH . 
F 3 HOH A 60 460 217 HOH HOH . 
F 3 HOH A 61 461 219 HOH HOH . 
F 3 HOH A 62 462 143 HOH HOH . 
F 3 HOH A 63 463 238 HOH HOH . 
F 3 HOH A 64 464 102 HOH HOH . 
F 3 HOH A 65 465 87 HOH HOH . 
F 3 HOH A 66 466 204 HOH HOH . 
F 3 HOH A 67 467 64 HOH HOH . 
F 3 HOH A 68 468 125 HOH HOH . 
F 3 HOH A 69 469 187 HOH HOH . 
F 3 HOH A 70 470 223 HOH HOH . 
F 3 HOH A 71 471 14 HOH HOH . 
F 3 HOH A 72 472 22 HOH HOH . 
F 3 HOH A 73 473 127 HOH HOH . 
F 3 HOH A 74 474 37 HOH HOH . 
F 3 HOH A 75 475 24 HOH HOH . 
F 3 HOH A 76 476 51 HOH HOH . 
F 3 HOH A 77 477 135 HOH HOH . 
F 3 HOH A 78 478 60 HOH HOH . 
F 3 HOH A 79 479 122 HOH HOH . 
F 3 HOH A 80 480 138 HOH HOH . 
F 3 HOH A 81 481 43 HOH HOH . 
F 3 HOH A 82 482 6 HOH HOH . 
F 3 HOH A 83 483 180 HOH HOH . 
F 3 HOH A 84 484 70 HOH HOH . 
F 3 HOH A 85 485 177 HOH HOH . 
F 3 HOH A 86 486 151 HOH HOH . 
F 3 HOH A 87 487 11 HOH HOH . 
F 3 HOH A 88 488 28 HOH HOH . 
F 3 HOH A 89 489 86 HOH HOH . 
F 3 HOH A 90 490 65 HOH HOH . 
F 3 HOH A 91 491 34 HOH HOH . 
F 3 HOH A 92 492 241 HOH HOH . 
F 3 HOH A 93 493 155 HOH HOH . 
F 3 HOH A 94 494 194 HOH HOH . 
F 3 HOH A 95 495 72 HOH HOH . 
F 3 HOH A 96 496 81 HOH HOH . 
F 3 HOH A 97 497 190 HOH HOH . 
F 3 HOH A 98 498 30 HOH HOH . 
F 3 HOH A 99 499 12 HOH HOH . 
F 3 HOH A 100 500 214 HOH HOH . 
F 3 HOH A 101 501 25 HOH HOH . 
F 3 HOH A 102 502 149 HOH HOH . 
F 3 HOH A 103 503 126 HOH HOH . 
F 3 HOH A 104 504 96 HOH HOH . 
F 3 HOH A 105 505 184 HOH HOH . 
F 3 HOH A 106 506 16 HOH HOH . 
F 3 HOH A 107 507 23 HOH HOH . 
F 3 HOH A 108 508 7 HOH HOH . 
F 3 HOH A 109 509 100 HOH HOH . 
F 3 HOH A 110 510 83 HOH HOH . 
F 3 HOH A 111 511 131 HOH HOH . 
F 3 HOH A 112 512 17 HOH HOH . 
F 3 HOH A 113 513 132 HOH HOH . 
F 3 HOH A 114 514 260 HOH HOH . 
F 3 HOH A 115 515 171 HOH HOH . 
F 3 HOH A 116 516 69 HOH HOH . 
F 3 HOH A 117 517 185 HOH HOH . 
F 3 HOH A 118 518 54 HOH HOH . 
F 3 HOH A 119 519 162 HOH HOH . 
F 3 HOH A 120 520 89 HOH HOH . 
F 3 HOH A 121 521 27 HOH HOH . 
F 3 HOH A 122 522 159 HOH HOH . 
F 3 HOH A 123 523 124 HOH HOH . 
F 3 HOH A 124 524 49 HOH HOH . 
F 3 HOH A 125 525 236 HOH HOH . 
F 3 HOH A 126 526 74 HOH HOH . 
F 3 HOH A 127 527 90 HOH HOH . 
F 3 HOH A 128 528 179 HOH HOH . 
F 3 HOH A 129 529 218 HOH HOH . 
F 3 HOH A 130 530 10 HOH HOH . 
F 3 HOH A 131 531 32 HOH HOH . 
F 3 HOH A 132 532 103 HOH HOH . 
F 3 HOH A 133 533 13 HOH HOH . 
F 3 HOH A 134 534 44 HOH HOH . 
F 3 HOH A 135 535 239 HOH HOH . 
F 3 HOH A 136 536 240 HOH HOH . 
F 3 HOH A 137 537 129 HOH HOH . 
F 3 HOH A 138 538 139 HOH HOH . 
F 3 HOH A 139 539 20 HOH HOH . 
F 3 HOH A 140 540 136 HOH HOH . 
F 3 HOH A 141 541 134 HOH HOH . 
F 3 HOH A 142 542 196 HOH HOH . 
F 3 HOH A 143 543 82 HOH HOH . 
F 3 HOH A 144 544 78 HOH HOH . 
F 3 HOH A 145 545 79 HOH HOH . 
F 3 HOH A 146 546 26 HOH HOH . 
F 3 HOH A 147 547 150 HOH HOH . 
F 3 HOH A 148 548 201 HOH HOH . 
F 3 HOH A 149 549 106 HOH HOH . 
F 3 HOH A 150 550 94 HOH HOH . 
F 3 HOH A 151 551 117 HOH HOH . 
F 3 HOH A 152 552 145 HOH HOH . 
F 3 HOH A 153 553 247 HOH HOH . 
F 3 HOH A 154 554 31 HOH HOH . 
F 3 HOH A 155 555 144 HOH HOH . 
F 3 HOH A 156 556 183 HOH HOH . 
F 3 HOH A 157 557 68 HOH HOH . 
F 3 HOH A 158 558 63 HOH HOH . 
F 3 HOH A 159 559 175 HOH HOH . 
F 3 HOH A 160 560 73 HOH HOH . 
F 3 HOH A 161 561 228 HOH HOH . 
F 3 HOH A 162 562 251 HOH HOH . 
F 3 HOH A 163 563 130 HOH HOH . 
F 3 HOH A 164 564 227 HOH HOH . 
F 3 HOH A 165 565 57 HOH HOH . 
F 3 HOH A 166 566 200 HOH HOH . 
F 3 HOH A 167 567 116 HOH HOH . 
F 3 HOH A 168 568 252 HOH HOH . 
F 3 HOH A 169 569 208 HOH HOH . 
F 3 HOH A 170 570 243 HOH HOH . 
F 3 HOH A 171 571 33 HOH HOH . 
F 3 HOH A 172 572 234 HOH HOH . 
F 3 HOH A 173 573 36 HOH HOH . 
F 3 HOH A 174 574 222 HOH HOH . 
F 3 HOH A 175 575 62 HOH HOH . 
F 3 HOH A 176 576 76 HOH HOH . 
F 3 HOH A 177 577 152 HOH HOH . 
F 3 HOH A 178 578 237 HOH HOH . 
F 3 HOH A 179 579 84 HOH HOH . 
F 3 HOH A 180 580 95 HOH HOH . 
F 3 HOH A 181 581 142 HOH HOH . 
F 3 HOH A 182 582 186 HOH HOH . 
F 3 HOH A 183 583 169 HOH HOH . 
F 3 HOH A 184 584 104 HOH HOH . 
F 3 HOH A 185 585 242 HOH HOH . 
F 3 HOH A 186 586 253 HOH HOH . 
F 3 HOH A 187 587 59 HOH HOH . 
F 3 HOH A 188 588 254 HOH HOH . 
F 3 HOH A 189 589 163 HOH HOH . 
F 3 HOH A 190 590 178 HOH HOH . 
F 3 HOH A 191 591 210 HOH HOH . 
F 3 HOH A 192 592 75 HOH HOH . 
F 3 HOH A 193 593 246 HOH HOH . 
F 3 HOH A 194 594 107 HOH HOH . 
F 3 HOH A 195 595 119 HOH HOH . 
F 3 HOH A 196 596 231 HOH HOH . 
F 3 HOH A 197 597 77 HOH HOH . 
F 3 HOH A 198 598 168 HOH HOH . 
F 3 HOH A 199 599 121 HOH HOH . 
F 3 HOH A 200 600 92 HOH HOH . 
F 3 HOH A 201 601 259 HOH HOH . 
F 3 HOH A 202 602 257 HOH HOH . 
F 3 HOH A 203 603 202 HOH HOH . 
F 3 HOH A 204 604 255 HOH HOH . 
F 3 HOH A 205 605 52 HOH HOH . 
F 3 HOH A 206 606 146 HOH HOH . 
F 3 HOH A 207 607 164 HOH HOH . 
F 3 HOH A 208 608 209 HOH HOH . 
F 3 HOH A 209 609 250 HOH HOH . 
F 3 HOH A 210 610 140 HOH HOH . 
F 3 HOH A 211 611 213 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . B . D 2 51.829 28.708 -11.56 0.61 51.05 ? C1 GOL 303 A 1 
HETATM 2 O O1 GOL . B . D 2 52.115 27.397 -11.16 0.61 29.96 ? O1 GOL 303 A 1 
HETATM 3 C C2 GOL . B . D 2 51.952 29.622 -10.312 0.61 47.18 ? C2 GOL 303 A 1 
HETATM 4 O O2 GOL . B . D 2 53.135 29.429 -9.628 0.61 51.91 ? O2 GOL 303 A 1 
HETATM 5 C C3 GOL . B . D 2 50.716 29.287 -9.463 0.61 41.67 ? C3 GOL 303 A 1 
HETATM 6 O O3 GOL . B . D 2 50.931 29.763 -8.165 0.61 51.96 ? O3 GOL 303 A 1 
HETATM 7 H H11 GOL . B . D 2 50.942 28.799 -11.94 0.61 61.26 ? H11 GOL 303 A 1 
HETATM 8 H H12 GOL . B . D 2 52.442 29.01 -12.249 0.61 61.26 ? H12 GOL 303 A 1 
HETATM 9 H HO1 GOL . B . D 2 52.432 27 -11.841 0.61 35.95 ? HO1 GOL 303 A 1 
HETATM 10 H H2 GOL . B . D 2 51.947 30.556 -10.574 0.61 56.61 ? H2 GOL 303 A 1 
HETATM 11 H HO2 GOL . B . D 2 53.366 30.174 -9.291 0.61 62.29 ? HO2 GOL 303 A 1 
HETATM 12 H H31 GOL . B . D 2 50.554 28.331 -9.504 0.61 50.01 ? H31 GOL 303 A 1 
HETATM 13 H H32 GOL . B . D 2 49.932 29.691 -9.867 0.61 50.01 ? H32 GOL 303 A 1 
HETATM 14 H HO3 GOL . B . D 2 50.165 29.848 -7.806 0.61 62.35 ? HO3 GOL 303 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#