data_6B90
#
_model_server_result.job_id            d5bh9GlXxqbPl3mwJ9VwWg 
_model_server_result.datetime_utc      '2024-11-16 13:30:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6b90 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    6B90 
#
_exptl.entry_id    6B90 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6B90 
_cell.length_a            88.118 
_cell.length_b            88.118 
_cell.length_c            103.9 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6B90 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6B90 
_atom_sites.fract_transf_matrix[1][1]    0.011348 
_atom_sites.fract_transf_matrix[1][2]    0.006552 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013104 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009625 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 401 403 GOL GOL . 
C 2 GOL A 1 402 404 GOL GOL . 
D 2 GOL A 1 403 405 GOL GOL . 
E 2 GOL A 1 404 407 GOL GOL . 
F 2 GOL A 1 405 408 GOL GOL . 
G 3 TRS A 1 406 322 TRS TRS . 
H 4 HOH A 1 501 447 HOH HOH . 
H 4 HOH A 2 502 275 HOH HOH . 
H 4 HOH A 3 503 406 HOH HOH . 
H 4 HOH A 4 504 325 HOH HOH . 
H 4 HOH A 5 505 88 HOH HOH . 
H 4 HOH A 6 506 255 HOH HOH . 
H 4 HOH A 7 507 46 HOH HOH . 
H 4 HOH A 8 508 157 HOH HOH . 
H 4 HOH A 9 509 329 HOH HOH . 
H 4 HOH A 10 510 398 HOH HOH . 
H 4 HOH A 11 511 247 HOH HOH . 
H 4 HOH A 12 512 464 HOH HOH . 
H 4 HOH A 13 513 391 HOH HOH . 
H 4 HOH A 14 514 441 HOH HOH . 
H 4 HOH A 15 515 296 HOH HOH . 
H 4 HOH A 16 516 254 HOH HOH . 
H 4 HOH A 17 517 274 HOH HOH . 
H 4 HOH A 18 518 85 HOH HOH . 
H 4 HOH A 19 519 300 HOH HOH . 
H 4 HOH A 20 520 123 HOH HOH . 
H 4 HOH A 21 521 401 HOH HOH . 
H 4 HOH A 22 522 378 HOH HOH . 
H 4 HOH A 23 523 277 HOH HOH . 
H 4 HOH A 24 524 233 HOH HOH . 
H 4 HOH A 25 525 86 HOH HOH . 
H 4 HOH A 26 526 18 HOH HOH . 
H 4 HOH A 27 527 9 HOH HOH . 
H 4 HOH A 28 528 5 HOH HOH . 
H 4 HOH A 29 529 72 HOH HOH . 
H 4 HOH A 30 530 313 HOH HOH . 
H 4 HOH A 31 531 367 HOH HOH . 
H 4 HOH A 32 532 289 HOH HOH . 
H 4 HOH A 33 533 195 HOH HOH . 
H 4 HOH A 34 534 343 HOH HOH . 
H 4 HOH A 35 535 252 HOH HOH . 
H 4 HOH A 36 536 179 HOH HOH . 
H 4 HOH A 37 537 102 HOH HOH . 
H 4 HOH A 38 538 40 HOH HOH . 
H 4 HOH A 39 539 303 HOH HOH . 
H 4 HOH A 40 540 312 HOH HOH . 
H 4 HOH A 41 541 204 HOH HOH . 
H 4 HOH A 42 542 260 HOH HOH . 
H 4 HOH A 43 543 71 HOH HOH . 
H 4 HOH A 44 544 188 HOH HOH . 
H 4 HOH A 45 545 348 HOH HOH . 
H 4 HOH A 46 546 91 HOH HOH . 
H 4 HOH A 47 547 351 HOH HOH . 
H 4 HOH A 48 548 245 HOH HOH . 
H 4 HOH A 49 549 55 HOH HOH . 
H 4 HOH A 50 550 14 HOH HOH . 
H 4 HOH A 51 551 7 HOH HOH . 
H 4 HOH A 52 552 89 HOH HOH . 
H 4 HOH A 53 553 463 HOH HOH . 
H 4 HOH A 54 554 402 HOH HOH . 
H 4 HOH A 55 555 16 HOH HOH . 
H 4 HOH A 56 556 400 HOH HOH . 
H 4 HOH A 57 557 430 HOH HOH . 
H 4 HOH A 58 558 30 HOH HOH . 
H 4 HOH A 59 559 113 HOH HOH . 
H 4 HOH A 60 560 15 HOH HOH . 
H 4 HOH A 61 561 417 HOH HOH . 
H 4 HOH A 62 562 3 HOH HOH . 
H 4 HOH A 63 563 21 HOH HOH . 
H 4 HOH A 64 564 137 HOH HOH . 
H 4 HOH A 65 565 198 HOH HOH . 
H 4 HOH A 66 566 180 HOH HOH . 
H 4 HOH A 67 567 17 HOH HOH . 
H 4 HOH A 68 568 38 HOH HOH . 
H 4 HOH A 69 569 29 HOH HOH . 
H 4 HOH A 70 570 229 HOH HOH . 
H 4 HOH A 71 571 395 HOH HOH . 
H 4 HOH A 72 572 140 HOH HOH . 
H 4 HOH A 73 573 239 HOH HOH . 
H 4 HOH A 74 574 42 HOH HOH . 
H 4 HOH A 75 575 24 HOH HOH . 
H 4 HOH A 76 576 1 HOH HOH . 
H 4 HOH A 77 577 185 HOH HOH . 
H 4 HOH A 78 578 298 HOH HOH . 
H 4 HOH A 79 579 290 HOH HOH . 
H 4 HOH A 80 580 371 HOH HOH . 
H 4 HOH A 81 581 308 HOH HOH . 
H 4 HOH A 82 582 35 HOH HOH . 
H 4 HOH A 83 583 34 HOH HOH . 
H 4 HOH A 84 584 450 HOH HOH . 
H 4 HOH A 85 585 12 HOH HOH . 
H 4 HOH A 86 586 421 HOH HOH . 
H 4 HOH A 87 587 375 HOH HOH . 
H 4 HOH A 88 588 443 HOH HOH . 
H 4 HOH A 89 589 2 HOH HOH . 
H 4 HOH A 90 590 22 HOH HOH . 
H 4 HOH A 91 591 67 HOH HOH . 
H 4 HOH A 92 592 358 HOH HOH . 
H 4 HOH A 93 593 4 HOH HOH . 
H 4 HOH A 94 594 415 HOH HOH . 
H 4 HOH A 95 595 227 HOH HOH . 
H 4 HOH A 96 596 6 HOH HOH . 
H 4 HOH A 97 597 25 HOH HOH . 
H 4 HOH A 98 598 13 HOH HOH . 
H 4 HOH A 99 599 276 HOH HOH . 
H 4 HOH A 100 600 377 HOH HOH . 
H 4 HOH A 101 601 341 HOH HOH . 
H 4 HOH A 102 602 317 HOH HOH . 
H 4 HOH A 103 603 266 HOH HOH . 
H 4 HOH A 104 604 11 HOH HOH . 
H 4 HOH A 105 605 440 HOH HOH . 
H 4 HOH A 106 606 366 HOH HOH . 
H 4 HOH A 107 607 20 HOH HOH . 
H 4 HOH A 108 608 334 HOH HOH . 
H 4 HOH A 109 609 418 HOH HOH . 
H 4 HOH A 110 610 139 HOH HOH . 
H 4 HOH A 111 611 291 HOH HOH . 
H 4 HOH A 112 612 403 HOH HOH . 
H 4 HOH A 113 613 33 HOH HOH . 
H 4 HOH A 114 614 248 HOH HOH . 
H 4 HOH A 115 615 361 HOH HOH . 
H 4 HOH A 116 616 94 HOH HOH . 
H 4 HOH A 117 617 326 HOH HOH . 
H 4 HOH A 118 618 47 HOH HOH . 
H 4 HOH A 119 619 279 HOH HOH . 
H 4 HOH A 120 620 433 HOH HOH . 
H 4 HOH A 121 621 265 HOH HOH . 
H 4 HOH A 122 622 26 HOH HOH . 
H 4 HOH A 123 623 23 HOH HOH . 
H 4 HOH A 124 624 172 HOH HOH . 
H 4 HOH A 125 625 452 HOH HOH . 
H 4 HOH A 126 626 131 HOH HOH . 
H 4 HOH A 127 627 344 HOH HOH . 
H 4 HOH A 128 628 372 HOH HOH . 
H 4 HOH A 129 629 241 HOH HOH . 
H 4 HOH A 130 630 286 HOH HOH . 
H 4 HOH A 131 631 340 HOH HOH . 
H 4 HOH A 132 632 240 HOH HOH . 
H 4 HOH A 133 633 471 HOH HOH . 
H 4 HOH A 134 634 32 HOH HOH . 
H 4 HOH A 135 635 369 HOH HOH . 
H 4 HOH A 136 636 309 HOH HOH . 
H 4 HOH A 137 637 414 HOH HOH . 
H 4 HOH A 138 638 281 HOH HOH . 
H 4 HOH A 139 639 435 HOH HOH . 
H 4 HOH A 140 640 434 HOH HOH . 
H 4 HOH A 141 641 250 HOH HOH . 
H 4 HOH A 142 642 253 HOH HOH . 
H 4 HOH A 143 643 282 HOH HOH . 
H 4 HOH A 144 644 314 HOH HOH . 
H 4 HOH A 145 645 431 HOH HOH . 
H 4 HOH A 146 646 307 HOH HOH . 
H 4 HOH A 147 647 404 HOH HOH . 
H 4 HOH A 148 648 460 HOH HOH . 
H 4 HOH A 149 649 368 HOH HOH . 
H 4 HOH A 150 650 83 HOH HOH . 
H 4 HOH A 151 651 399 HOH HOH . 
H 4 HOH A 152 652 423 HOH HOH . 
H 4 HOH A 153 653 437 HOH HOH . 
H 4 HOH A 154 654 214 HOH HOH . 
H 4 HOH A 155 655 218 HOH HOH . 
H 4 HOH A 156 656 405 HOH HOH . 
H 4 HOH A 157 657 385 HOH HOH . 
H 4 HOH A 158 658 219 HOH HOH . 
H 4 HOH A 159 659 114 HOH HOH . 
H 4 HOH A 160 660 149 HOH HOH . 
H 4 HOH A 161 661 63 HOH HOH . 
H 4 HOH A 162 662 78 HOH HOH . 
H 4 HOH A 163 663 389 HOH HOH . 
H 4 HOH A 164 664 216 HOH HOH . 
H 4 HOH A 165 665 135 HOH HOH . 
H 4 HOH A 166 666 410 HOH HOH . 
H 4 HOH A 167 667 10 HOH HOH . 
H 4 HOH A 168 668 383 HOH HOH . 
H 4 HOH A 169 669 373 HOH HOH . 
H 4 HOH A 170 670 90 HOH HOH . 
H 4 HOH A 171 671 338 HOH HOH . 
H 4 HOH A 172 672 468 HOH HOH . 
H 4 HOH A 173 673 396 HOH HOH . 
H 4 HOH A 174 674 339 HOH HOH . 
H 4 HOH A 175 675 234 HOH HOH . 
H 4 HOH A 176 676 62 HOH HOH . 
H 4 HOH A 177 677 477 HOH HOH . 
H 4 HOH A 178 678 50 HOH HOH . 
H 4 HOH A 179 679 59 HOH HOH . 
H 4 HOH A 180 680 44 HOH HOH . 
H 4 HOH A 181 681 36 HOH HOH . 
H 4 HOH A 182 682 228 HOH HOH . 
H 4 HOH A 183 683 87 HOH HOH . 
H 4 HOH A 184 684 424 HOH HOH . 
H 4 HOH A 185 685 183 HOH HOH . 
H 4 HOH A 186 686 299 HOH HOH . 
H 4 HOH A 187 687 425 HOH HOH . 
H 4 HOH A 188 688 68 HOH HOH . 
H 4 HOH A 189 689 272 HOH HOH . 
H 4 HOH A 190 690 285 HOH HOH . 
H 4 HOH A 191 691 242 HOH HOH . 
H 4 HOH A 192 692 264 HOH HOH . 
H 4 HOH A 193 693 95 HOH HOH . 
H 4 HOH A 194 694 145 HOH HOH . 
H 4 HOH A 195 695 349 HOH HOH . 
H 4 HOH A 196 696 297 HOH HOH . 
H 4 HOH A 197 697 457 HOH HOH . 
H 4 HOH A 198 698 365 HOH HOH . 
H 4 HOH A 199 699 390 HOH HOH . 
H 4 HOH A 200 700 80 HOH HOH . 
H 4 HOH A 201 701 364 HOH HOH . 
H 4 HOH A 202 702 84 HOH HOH . 
H 4 HOH A 203 703 117 HOH HOH . 
H 4 HOH A 204 704 451 HOH HOH . 
H 4 HOH A 205 705 472 HOH HOH . 
H 4 HOH A 206 706 438 HOH HOH . 
H 4 HOH A 207 707 449 HOH HOH . 
H 4 HOH A 208 708 270 HOH HOH . 
H 4 HOH A 209 709 439 HOH HOH . 
H 4 HOH A 210 710 347 HOH HOH . 
H 4 HOH A 211 711 230 HOH HOH . 
H 4 HOH A 212 712 444 HOH HOH . 
H 4 HOH A 213 713 442 HOH HOH . 
H 4 HOH A 214 714 324 HOH HOH . 
H 4 HOH A 215 715 419 HOH HOH . 
H 4 HOH A 216 716 456 HOH HOH . 
H 4 HOH A 217 717 106 HOH HOH . 
H 4 HOH A 218 718 413 HOH HOH . 
H 4 HOH A 219 719 454 HOH HOH . 
H 4 HOH A 220 720 355 HOH HOH . 
H 4 HOH A 221 721 246 HOH HOH . 
H 4 HOH A 222 722 92 HOH HOH . 
H 4 HOH A 223 723 467 HOH HOH . 
H 4 HOH A 224 724 466 HOH HOH . 
H 4 HOH A 225 725 409 HOH HOH . 
H 4 HOH A 226 726 288 HOH HOH . 
H 4 HOH A 227 727 342 HOH HOH . 
H 4 HOH A 228 728 465 HOH HOH . 
H 4 HOH A 229 729 337 HOH HOH . 
H 4 HOH A 230 730 407 HOH HOH . 
H 4 HOH A 231 731 459 HOH HOH . 
H 4 HOH A 232 732 197 HOH HOH . 
H 4 HOH A 233 733 422 HOH HOH . 
H 4 HOH A 234 734 397 HOH HOH . 
H 4 HOH A 235 735 476 HOH HOH . 
H 4 HOH A 236 736 295 HOH HOH . 
H 4 HOH A 237 737 458 HOH HOH . 
H 4 HOH A 238 738 196 HOH HOH . 
H 4 HOH A 239 739 294 HOH HOH . 
H 4 HOH A 240 740 469 HOH HOH . 
H 4 HOH A 241 741 474 HOH HOH . 
H 4 HOH A 242 742 448 HOH HOH . 
H 4 HOH A 243 743 432 HOH HOH . 
H 4 HOH A 244 744 426 HOH HOH . 
H 4 HOH A 245 745 453 HOH HOH . 
H 4 HOH A 246 746 473 HOH HOH . 
H 4 HOH A 247 747 420 HOH HOH . 
H 4 HOH A 248 748 306 HOH HOH . 
H 4 HOH A 249 749 436 HOH HOH . 
H 4 HOH A 250 750 429 HOH HOH . 
H 4 HOH A 251 751 360 HOH HOH . 
H 4 HOH A 252 752 311 HOH HOH . 
H 4 HOH A 253 753 209 HOH HOH . 
H 4 HOH A 254 754 408 HOH HOH . 
H 4 HOH A 255 755 316 HOH HOH . 
H 4 HOH A 256 756 132 HOH HOH . 
H 4 HOH A 257 757 461 HOH HOH . 
H 4 HOH A 258 758 124 HOH HOH . 
H 4 HOH A 259 759 462 HOH HOH . 
H 4 HOH A 260 760 428 HOH HOH . 
H 4 HOH A 261 761 359 HOH HOH . 
H 4 HOH A 262 762 470 HOH HOH . 
H 4 HOH A 263 763 287 HOH HOH . 
H 4 HOH A 264 764 475 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 39.551 7.976 14.66 1 54.1 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . D 2 40.467 8.173 15.697 1 49.99 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . D 2 39.86 6.57 14.074 1 67.81 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . D 2 40.694 6.642 12.947 1 49.84 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . D 2 38.493 5.922 13.731 1 70.38 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . D 2 38.589 5.576 12.394 1 53.77 ? O3 GOL 403 A 1 
HETATM 7 H H11 GOL . . . D 2 39.619 8.644 13.96 1 64.86 ? H11 GOL 403 A 1 
HETATM 8 H H12 GOL . . . D 2 38.635 8.011 14.977 1 64.86 ? H12 GOL 403 A 1 
HETATM 9 H HO1 GOL . . . D 2 40.073 7.942 16.414 1 59.93 ? HO1 GOL 403 A 1 
HETATM 10 H H2 GOL . . . D 2 40.34 6.032 14.722 1 81.31 ? H2 GOL 403 A 1 
HETATM 11 H HO2 GOL . . . D 2 41.076 5.889 12.856 1 59.75 ? HO2 GOL 403 A 1 
HETATM 12 H H31 GOL . . . D 2 37.777 6.544 13.932 1 84.4 ? H31 GOL 403 A 1 
HETATM 13 H H32 GOL . . . D 2 38.341 5.152 14.301 1 84.4 ? H32 GOL 403 A 1 
HETATM 14 H HO3 GOL . . . D 2 37.894 5.123 12.208 1 64.46 ? HO3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#