data_6B92 # _model_server_result.job_id SAvk8SI1Ubrqmw6j_NnSBg _model_server_result.datetime_utc '2024-11-15 09:24:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b92 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 6B92 # _exptl.entry_id 6B92 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6B92 _cell.length_a 190.351 _cell.length_b 190.351 _cell.length_c 190.351 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 286 n n N HN1 SAH sing 287 n n N HN2 SAH sing 288 n n CA CB SAH sing 289 n n CA C SAH sing 290 n n CA HA SAH sing 291 n n CB CG SAH sing 292 n n CB HB1 SAH sing 293 n n CB HB2 SAH sing 294 n n CG SD SAH sing 295 n n CG HG1 SAH sing 296 n n CG HG2 SAH sing 297 n n SD C5' SAH sing 298 n n C O SAH doub 299 n n C OXT SAH sing 300 n n OXT HXT SAH sing 301 n n C5' C4' SAH sing 302 n n C5' "H5'1" SAH sing 303 n n C5' "H5'2" SAH sing 304 n n C4' O4' SAH sing 305 n n C4' C3' SAH sing 306 n n C4' H4' SAH sing 307 n n O4' C1' SAH sing 308 n n C3' O3' SAH sing 309 n n C3' C2' SAH sing 310 n n C3' H3' SAH sing 311 n n O3' HO3' SAH sing 312 n n C2' O2' SAH sing 313 n n C2' C1' SAH sing 314 n n C2' H2' SAH sing 315 n n O2' HO2' SAH sing 316 n n C1' N9 SAH sing 317 n n C1' H1' SAH sing 318 n n N9 C8 SAH sing 319 n y N9 C4 SAH sing 320 n y C8 N7 SAH doub 321 n y C8 H8 SAH sing 322 n n N7 C5 SAH sing 323 n y C5 C6 SAH sing 324 n y C5 C4 SAH doub 325 n y C6 N6 SAH sing 326 n n C6 N1 SAH doub 327 n y N6 HN61 SAH sing 328 n n N6 HN62 SAH sing 329 n n N1 C2 SAH sing 330 n y C2 N3 SAH doub 331 n y C2 H2 SAH sing 332 n n N3 C4 SAH sing 333 n y # _atom_sites.entry_id 6B92 _atom_sites.fract_transf_matrix[1][1] 0.005253 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 1 EDO EDO . C 2 EDO A 1 302 2 EDO EDO . D 2 EDO A 1 303 3 EDO EDO . E 2 EDO A 1 304 4 EDO EDO . F 3 SAH A 1 305 1 SAH SAH . G 4 HOH A 1 401 73 HOH HOH . G 4 HOH A 2 402 40 HOH HOH . G 4 HOH A 3 403 246 HOH HOH . G 4 HOH A 4 404 411 HOH HOH . G 4 HOH A 5 405 357 HOH HOH . G 4 HOH A 6 406 21 HOH HOH . G 4 HOH A 7 407 275 HOH HOH . G 4 HOH A 8 408 400 HOH HOH . G 4 HOH A 9 409 15 HOH HOH . G 4 HOH A 10 410 416 HOH HOH . G 4 HOH A 11 411 90 HOH HOH . G 4 HOH A 12 412 345 HOH HOH . G 4 HOH A 13 413 194 HOH HOH . G 4 HOH A 14 414 31 HOH HOH . G 4 HOH A 15 415 150 HOH HOH . G 4 HOH A 16 416 312 HOH HOH . G 4 HOH A 17 417 120 HOH HOH . G 4 HOH A 18 418 355 HOH HOH . G 4 HOH A 19 419 20 HOH HOH . G 4 HOH A 20 420 10 HOH HOH . G 4 HOH A 21 421 353 HOH HOH . G 4 HOH A 22 422 354 HOH HOH . G 4 HOH A 23 423 310 HOH HOH . G 4 HOH A 24 424 37 HOH HOH . G 4 HOH A 25 425 34 HOH HOH . G 4 HOH A 26 426 2 HOH HOH . G 4 HOH A 27 427 157 HOH HOH . G 4 HOH A 28 428 22 HOH HOH . G 4 HOH A 29 429 104 HOH HOH . G 4 HOH A 30 430 72 HOH HOH . G 4 HOH A 31 431 16 HOH HOH . G 4 HOH A 32 432 340 HOH HOH . G 4 HOH A 33 433 401 HOH HOH . G 4 HOH A 34 434 378 HOH HOH . G 4 HOH A 35 435 311 HOH HOH . G 4 HOH A 36 436 1 HOH HOH . G 4 HOH A 37 437 323 HOH HOH . G 4 HOH A 38 438 38 HOH HOH . G 4 HOH A 39 439 332 HOH HOH . G 4 HOH A 40 440 214 HOH HOH . G 4 HOH A 41 441 339 HOH HOH . G 4 HOH A 42 442 12 HOH HOH . G 4 HOH A 43 443 344 HOH HOH . G 4 HOH A 44 444 27 HOH HOH . G 4 HOH A 45 445 48 HOH HOH . G 4 HOH A 46 446 346 HOH HOH . G 4 HOH A 47 447 50 HOH HOH . G 4 HOH A 48 448 379 HOH HOH . G 4 HOH A 49 449 373 HOH HOH . G 4 HOH A 50 450 75 HOH HOH . G 4 HOH A 51 451 19 HOH HOH . G 4 HOH A 52 452 347 HOH HOH . G 4 HOH A 53 453 352 HOH HOH . G 4 HOH A 54 454 350 HOH HOH . G 4 HOH A 55 455 398 HOH HOH . G 4 HOH A 56 456 382 HOH HOH . G 4 HOH A 57 457 184 HOH HOH . G 4 HOH A 58 458 62 HOH HOH . G 4 HOH A 59 459 359 HOH HOH . G 4 HOH A 60 460 121 HOH HOH . G 4 HOH A 61 461 393 HOH HOH . G 4 HOH A 62 462 341 HOH HOH . G 4 HOH A 63 463 142 HOH HOH . G 4 HOH A 64 464 358 HOH HOH . G 4 HOH A 65 465 380 HOH HOH . G 4 HOH A 66 466 334 HOH HOH . G 4 HOH A 67 467 394 HOH HOH . G 4 HOH A 68 468 327 HOH HOH . G 4 HOH A 69 469 25 HOH HOH . G 4 HOH A 70 470 319 HOH HOH . G 4 HOH A 71 471 52 HOH HOH . G 4 HOH A 72 472 166 HOH HOH . G 4 HOH A 73 473 316 HOH HOH . G 4 HOH A 74 474 370 HOH HOH . G 4 HOH A 75 475 7 HOH HOH . G 4 HOH A 76 476 410 HOH HOH . G 4 HOH A 77 477 28 HOH HOH . G 4 HOH A 78 478 349 HOH HOH . G 4 HOH A 79 479 162 HOH HOH . G 4 HOH A 80 480 367 HOH HOH . G 4 HOH A 81 481 17 HOH HOH . G 4 HOH A 82 482 343 HOH HOH . G 4 HOH A 83 483 172 HOH HOH . G 4 HOH A 84 484 118 HOH HOH . G 4 HOH A 85 485 100 HOH HOH . G 4 HOH A 86 486 53 HOH HOH . G 4 HOH A 87 487 131 HOH HOH . G 4 HOH A 88 488 55 HOH HOH . G 4 HOH A 89 489 11 HOH HOH . G 4 HOH A 90 490 366 HOH HOH . G 4 HOH A 91 491 387 HOH HOH . G 4 HOH A 92 492 389 HOH HOH . G 4 HOH A 93 493 406 HOH HOH . G 4 HOH A 94 494 248 HOH HOH . G 4 HOH A 95 495 4 HOH HOH . G 4 HOH A 96 496 361 HOH HOH . G 4 HOH A 97 497 351 HOH HOH . G 4 HOH A 98 498 318 HOH HOH . G 4 HOH A 99 499 338 HOH HOH . G 4 HOH A 100 500 231 HOH HOH . G 4 HOH A 101 501 68 HOH HOH . G 4 HOH A 102 502 313 HOH HOH . G 4 HOH A 103 503 43 HOH HOH . G 4 HOH A 104 504 325 HOH HOH . G 4 HOH A 105 505 49 HOH HOH . G 4 HOH A 106 506 375 HOH HOH . G 4 HOH A 107 507 324 HOH HOH . G 4 HOH A 108 508 239 HOH HOH . G 4 HOH A 109 509 330 HOH HOH . G 4 HOH A 110 510 288 HOH HOH . G 4 HOH A 111 511 81 HOH HOH . G 4 HOH A 112 512 96 HOH HOH . G 4 HOH A 113 513 374 HOH HOH . G 4 HOH A 114 514 59 HOH HOH . G 4 HOH A 115 515 336 HOH HOH . G 4 HOH A 116 516 33 HOH HOH . G 4 HOH A 117 517 140 HOH HOH . G 4 HOH A 118 518 414 HOH HOH . G 4 HOH A 119 519 76 HOH HOH . G 4 HOH A 120 520 119 HOH HOH . G 4 HOH A 121 521 56 HOH HOH . G 4 HOH A 122 522 283 HOH HOH . G 4 HOH A 123 523 408 HOH HOH . G 4 HOH A 124 524 376 HOH HOH . G 4 HOH A 125 525 54 HOH HOH . G 4 HOH A 126 526 67 HOH HOH . G 4 HOH A 127 527 57 HOH HOH . G 4 HOH A 128 528 395 HOH HOH . G 4 HOH A 129 529 85 HOH HOH . G 4 HOH A 130 530 158 HOH HOH . G 4 HOH A 131 531 289 HOH HOH . G 4 HOH A 132 532 362 HOH HOH . G 4 HOH A 133 533 144 HOH HOH . G 4 HOH A 134 534 116 HOH HOH . G 4 HOH A 135 535 364 HOH HOH . G 4 HOH A 136 536 399 HOH HOH . G 4 HOH A 137 537 87 HOH HOH . G 4 HOH A 138 538 29 HOH HOH . G 4 HOH A 139 539 122 HOH HOH . G 4 HOH A 140 540 273 HOH HOH . G 4 HOH A 141 541 369 HOH HOH . G 4 HOH A 142 542 45 HOH HOH . G 4 HOH A 143 543 388 HOH HOH . G 4 HOH A 144 544 397 HOH HOH . G 4 HOH A 145 545 291 HOH HOH . G 4 HOH A 146 546 404 HOH HOH . G 4 HOH A 147 547 252 HOH HOH . G 4 HOH A 148 548 402 HOH HOH . G 4 HOH A 149 549 333 HOH HOH . G 4 HOH A 150 550 284 HOH HOH . G 4 HOH A 151 551 342 HOH HOH . G 4 HOH A 152 552 326 HOH HOH . G 4 HOH A 153 553 188 HOH HOH . G 4 HOH A 154 554 409 HOH HOH . G 4 HOH A 155 555 386 HOH HOH . G 4 HOH A 156 556 405 HOH HOH . G 4 HOH A 157 557 383 HOH HOH . G 4 HOH A 158 558 392 HOH HOH . G 4 HOH A 159 559 371 HOH HOH . G 4 HOH A 160 560 337 HOH HOH . G 4 HOH A 161 561 328 HOH HOH . G 4 HOH A 162 562 356 HOH HOH . G 4 HOH A 163 563 368 HOH HOH . G 4 HOH A 164 564 384 HOH HOH . G 4 HOH A 165 565 365 HOH HOH . G 4 HOH A 166 566 418 HOH HOH . G 4 HOH A 167 567 301 HOH HOH . G 4 HOH A 168 568 91 HOH HOH . G 4 HOH A 169 569 331 HOH HOH . G 4 HOH A 170 570 417 HOH HOH . G 4 HOH A 171 571 396 HOH HOH . G 4 HOH A 172 572 390 HOH HOH . G 4 HOH A 173 573 413 HOH HOH . G 4 HOH A 174 574 256 HOH HOH . G 4 HOH A 175 575 77 HOH HOH . G 4 HOH A 176 576 385 HOH HOH . G 4 HOH A 177 577 321 HOH HOH . G 4 HOH A 178 578 377 HOH HOH . G 4 HOH A 179 579 415 HOH HOH . G 4 HOH A 180 580 132 HOH HOH . G 4 HOH A 181 581 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . F 3 -6.971 8.708 27.921 1 61.05 ? N SAH 305 A 1 HETATM 2 C CA SAH . . . F 3 -7.629 7.876 26.832 1 66.16 ? CA SAH 305 A 1 HETATM 3 C CB SAH . . . F 3 -7.233 8.242 25.335 1 60.89 ? CB SAH 305 A 1 HETATM 4 C CG SAH . . . F 3 -7.662 9.687 25.011 1 62.66 ? CG SAH 305 A 1 HETATM 5 S SD SAH . . . F 3 -7.806 9.963 23.197 1 65.93 ? SD SAH 305 A 1 HETATM 6 C C SAH . . . F 3 -7.313 6.358 26.998 1 63.9 ? C SAH 305 A 1 HETATM 7 O O SAH . . . F 3 -7.977 5.512 26.409 1 72.93 ? O SAH 305 A 1 HETATM 8 O OXT SAH . . . F 3 -6.404 5.979 27.719 1 63.68 ? OXT SAH 305 A 1 HETATM 9 C C5' SAH . . . F 3 -9.142 8.845 22.635 1 58.51 ? C5' SAH 305 A 1 HETATM 10 C C4' SAH . . . F 3 -10.392 8.93 23.446 1 55.98 ? C4' SAH 305 A 1 HETATM 11 O O4' SAH . . . F 3 -10.946 10.245 23.383 1 53.6 ? O4' SAH 305 A 1 HETATM 12 C C3' SAH . . . F 3 -11.429 7.934 22.841 1 54.44 ? C3' SAH 305 A 1 HETATM 13 O O3' SAH . . . F 3 -11.872 7.17 23.93 1 50.2 ? O3' SAH 305 A 1 HETATM 14 C C2' SAH . . . F 3 -12.544 8.876 22.278 1 54.11 ? C2' SAH 305 A 1 HETATM 15 O O2' SAH . . . F 3 -13.817 8.362 22.478 1 51.88 ? O2' SAH 305 A 1 HETATM 16 C C1' SAH . . . F 3 -12.362 10.128 23.237 1 55.29 ? C1' SAH 305 A 1 HETATM 17 N N9 SAH . . . F 3 -12.77 11.412 22.681 1 58.61 ? N9 SAH 305 A 1 HETATM 18 C C8 SAH . . . F 3 -12.55 11.948 21.363 1 57.63 ? C8 SAH 305 A 1 HETATM 19 N N7 SAH . . . F 3 -13.063 13.18 21.238 1 57.8 ? N7 SAH 305 A 1 HETATM 20 C C5 SAH . . . F 3 -13.624 13.489 22.501 1 56.88 ? C5 SAH 305 A 1 HETATM 21 C C6 SAH . . . F 3 -14.314 14.647 23.017 1 57.25 ? C6 SAH 305 A 1 HETATM 22 N N6 SAH . . . F 3 -14.532 15.723 22.242 1 57.96 ? N6 SAH 305 A 1 HETATM 23 N N1 SAH . . . F 3 -14.778 14.675 24.335 1 54.91 ? N1 SAH 305 A 1 HETATM 24 C C2 SAH . . . F 3 -14.539 13.547 25.081 1 56.99 ? C2 SAH 305 A 1 HETATM 25 N N3 SAH . . . F 3 -13.901 12.39 24.711 1 56.95 ? N3 SAH 305 A 1 HETATM 26 C C4 SAH . . . F 3 -13.445 12.405 23.408 1 56.61 ? C4 SAH 305 A 1 # _model_server_stats.io_time_ms 94 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #