data_6B95 # _model_server_result.job_id JZ4FB0KqiYPYlzBNonMXPA _model_server_result.datetime_utc '2024-12-13 10:27:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b95 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6B95 # _exptl.entry_id 6B95 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6B95 _cell.length_a 87.96 _cell.length_b 87.96 _cell.length_c 104.63 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B95 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 197 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 197 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id S19 _struct_conn.ptnr2_label_comp_id D0P _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id D0P _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.23 _struct_conn.pdbx_value_order sing # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 366 n n C C2 TRS sing 367 n n C C3 TRS sing 368 n n C N TRS sing 369 n n C1 O1 TRS sing 370 n n C1 H11 TRS sing 371 n n C1 H12 TRS sing 372 n n C2 O2 TRS sing 373 n n C2 H21 TRS sing 374 n n C2 H22 TRS sing 375 n n C3 O3 TRS sing 376 n n C3 H31 TRS sing 377 n n C3 H32 TRS sing 378 n n N HN1 TRS sing 379 n n N HN2 TRS sing 380 n n N HN3 TRS sing 381 n n O1 HO1 TRS sing 382 n n O2 HO2 TRS sing 383 n n O3 HO3 TRS sing 384 n n # _atom_sites.entry_id 6B95 _atom_sites.fract_transf_matrix[1][1] 0.011369 _atom_sites.fract_transf_matrix[1][2] 0.006564 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013128 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009557 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 401 1 TRS TRS . C 3 D0P A 1 402 1 D0P LIG . D 4 HOH A 1 501 689 HOH HOH . D 4 HOH A 2 502 479 HOH HOH . D 4 HOH A 3 503 464 HOH HOH . D 4 HOH A 4 504 666 HOH HOH . D 4 HOH A 5 505 419 HOH HOH . D 4 HOH A 6 506 502 HOH HOH . D 4 HOH A 7 507 412 HOH HOH . D 4 HOH A 8 508 668 HOH HOH . D 4 HOH A 9 509 414 HOH HOH . D 4 HOH A 10 510 719 HOH HOH . D 4 HOH A 11 511 426 HOH HOH . D 4 HOH A 12 512 688 HOH HOH . D 4 HOH A 13 513 555 HOH HOH . D 4 HOH A 14 514 664 HOH HOH . D 4 HOH A 15 515 465 HOH HOH . D 4 HOH A 16 516 653 HOH HOH . D 4 HOH A 17 517 718 HOH HOH . D 4 HOH A 18 518 427 HOH HOH . D 4 HOH A 19 519 468 HOH HOH . D 4 HOH A 20 520 506 HOH HOH . D 4 HOH A 21 521 446 HOH HOH . D 4 HOH A 22 522 437 HOH HOH . D 4 HOH A 23 523 658 HOH HOH . D 4 HOH A 24 524 405 HOH HOH . D 4 HOH A 25 525 407 HOH HOH . D 4 HOH A 26 526 674 HOH HOH . D 4 HOH A 27 527 672 HOH HOH . D 4 HOH A 28 528 667 HOH HOH . D 4 HOH A 29 529 676 HOH HOH . D 4 HOH A 30 530 444 HOH HOH . D 4 HOH A 31 531 418 HOH HOH . D 4 HOH A 32 532 411 HOH HOH . D 4 HOH A 33 533 475 HOH HOH . D 4 HOH A 34 534 489 HOH HOH . D 4 HOH A 35 535 409 HOH HOH . D 4 HOH A 36 536 408 HOH HOH . D 4 HOH A 37 537 702 HOH HOH . D 4 HOH A 38 538 413 HOH HOH . D 4 HOH A 39 539 459 HOH HOH . D 4 HOH A 40 540 434 HOH HOH . D 4 HOH A 41 541 431 HOH HOH . D 4 HOH A 42 542 402 HOH HOH . D 4 HOH A 43 543 415 HOH HOH . D 4 HOH A 44 544 447 HOH HOH . D 4 HOH A 45 545 404 HOH HOH . D 4 HOH A 46 546 406 HOH HOH . D 4 HOH A 47 547 722 HOH HOH . D 4 HOH A 48 548 436 HOH HOH . D 4 HOH A 49 549 470 HOH HOH . D 4 HOH A 50 550 619 HOH HOH . D 4 HOH A 51 551 410 HOH HOH . D 4 HOH A 52 552 467 HOH HOH . D 4 HOH A 53 553 530 HOH HOH . D 4 HOH A 54 554 713 HOH HOH . D 4 HOH A 55 555 556 HOH HOH . D 4 HOH A 56 556 632 HOH HOH . D 4 HOH A 57 557 440 HOH HOH . D 4 HOH A 58 558 708 HOH HOH . D 4 HOH A 59 559 424 HOH HOH . D 4 HOH A 60 560 675 HOH HOH . D 4 HOH A 61 561 643 HOH HOH . D 4 HOH A 62 562 422 HOH HOH . D 4 HOH A 63 563 416 HOH HOH . D 4 HOH A 64 564 439 HOH HOH . D 4 HOH A 65 565 488 HOH HOH . D 4 HOH A 66 566 634 HOH HOH . D 4 HOH A 67 567 403 HOH HOH . D 4 HOH A 68 568 507 HOH HOH . D 4 HOH A 69 569 472 HOH HOH . D 4 HOH A 70 570 714 HOH HOH . D 4 HOH A 71 571 661 HOH HOH . D 4 HOH A 72 572 709 HOH HOH . D 4 HOH A 73 573 492 HOH HOH . D 4 HOH A 74 574 656 HOH HOH . D 4 HOH A 75 575 706 HOH HOH . D 4 HOH A 76 576 546 HOH HOH . D 4 HOH A 77 577 660 HOH HOH . D 4 HOH A 78 578 707 HOH HOH . D 4 HOH A 79 579 484 HOH HOH . D 4 HOH A 80 580 420 HOH HOH . D 4 HOH A 81 581 649 HOH HOH . D 4 HOH A 82 582 715 HOH HOH . D 4 HOH A 83 583 692 HOH HOH . D 4 HOH A 84 584 677 HOH HOH . D 4 HOH A 85 585 491 HOH HOH . D 4 HOH A 86 586 549 HOH HOH . D 4 HOH A 87 587 536 HOH HOH . D 4 HOH A 88 588 451 HOH HOH . D 4 HOH A 89 589 654 HOH HOH . D 4 HOH A 90 590 685 HOH HOH . D 4 HOH A 91 591 698 HOH HOH . D 4 HOH A 92 592 542 HOH HOH . D 4 HOH A 93 593 639 HOH HOH . D 4 HOH A 94 594 704 HOH HOH . D 4 HOH A 95 595 454 HOH HOH . D 4 HOH A 96 596 553 HOH HOH . D 4 HOH A 97 597 694 HOH HOH . D 4 HOH A 98 598 483 HOH HOH . D 4 HOH A 99 599 697 HOH HOH . D 4 HOH A 100 600 712 HOH HOH . D 4 HOH A 101 601 651 HOH HOH . D 4 HOH A 102 602 552 HOH HOH . D 4 HOH A 103 603 635 HOH HOH . D 4 HOH A 104 604 717 HOH HOH . D 4 HOH A 105 605 695 HOH HOH . D 4 HOH A 106 606 490 HOH HOH . D 4 HOH A 107 607 673 HOH HOH . D 4 HOH A 108 608 663 HOH HOH . D 4 HOH A 109 609 665 HOH HOH . D 4 HOH A 110 610 630 HOH HOH . D 4 HOH A 111 611 711 HOH HOH . D 4 HOH A 112 612 638 HOH HOH . D 4 HOH A 113 613 645 HOH HOH . D 4 HOH A 114 614 705 HOH HOH . D 4 HOH A 115 615 721 HOH HOH . D 4 HOH A 116 616 644 HOH HOH . D 4 HOH A 117 617 684 HOH HOH . D 4 HOH A 118 618 716 HOH HOH . D 4 HOH A 119 619 720 HOH HOH . D 4 HOH A 120 620 691 HOH HOH . D 4 HOH A 121 621 682 HOH HOH . D 4 HOH A 122 622 703 HOH HOH . D 4 HOH A 123 623 683 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . A . B 2 133.25 -1.357 -4.216 0.54 38.01 ? C TRS 401 A 1 HETATM 2 C C TRS . B . B 2 133.419 -2.431 -4.476 0.46 43.93 ? C TRS 401 A 1 HETATM 3 C C1 TRS . A . B 2 132.872 -2.145 -5.456 0.54 40.69 ? C1 TRS 401 A 1 HETATM 4 C C1 TRS . B . B 2 133.086 -3.822 -5.022 0.46 42.83 ? C1 TRS 401 A 1 HETATM 5 C C2 TRS . A . B 2 131.998 -0.662 -3.734 0.54 41.68 ? C2 TRS 401 A 1 HETATM 6 C C2 TRS . B . B 2 132.173 -1.609 -4.175 0.46 41.2 ? C2 TRS 401 A 1 HETATM 7 C C3 TRS . A . B 2 134.311 -0.304 -4.507 0.54 49.98 ? C3 TRS 401 A 1 HETATM 8 C C3 TRS . B . B 2 134.205 -1.726 -5.569 0.46 48.78 ? C3 TRS 401 A 1 HETATM 9 N N TRS . A . B 2 133.762 -2.202 -3.116 0.54 39.69 ? N TRS 401 A 1 HETATM 10 N N TRS . B . B 2 134.255 -2.491 -3.247 0.46 37.15 ? N TRS 401 A 1 HETATM 11 O O1 TRS . A . B 2 132.038 -1.288 -6.228 0.54 50.05 ? O1 TRS 401 A 1 HETATM 12 O O1 TRS . B . B 2 132.611 -4.726 -4.023 0.46 52.32 ? O1 TRS 401 A 1 HETATM 13 O O2 TRS . A . B 2 132.364 0.464 -3.044 0.54 29.03 ? O2 TRS 401 A 1 HETATM 14 O O2 TRS . B . B 2 131.102 -2.425 -3.722 0.46 22.13 ? O2 TRS 401 A 1 HETATM 15 O O3 TRS . A . B 2 135.355 -0.798 -5.313 0.54 52.62 ? O3 TRS 401 A 1 HETATM 16 O O3 TRS . B . B 2 134.314 -0.35 -5.266 0.46 48.77 ? O3 TRS 401 A 1 HETATM 17 H H11 TRS . A . B 2 132.334 -3.052 -5.181 0.54 48.83 ? H11 TRS 401 A 1 HETATM 18 H H11 TRS . B . B 2 133.978 -4.244 -5.485 0.46 51.39 ? H11 TRS 401 A 1 HETATM 19 H H12 TRS . A . B 2 133.763 -2.419 -6.02 0.54 48.83 ? H12 TRS 401 A 1 HETATM 20 H H12 TRS . B . B 2 132.329 -3.725 -5.8 0.46 51.39 ? H12 TRS 401 A 1 HETATM 21 H H21 TRS . A . B 2 131.429 -1.328 -3.085 0.54 50.01 ? H21 TRS 401 A 1 HETATM 22 H H21 TRS . B . B 2 131.865 -1.077 -5.075 0.46 49.44 ? H21 TRS 401 A 1 HETATM 23 H H22 TRS . A . B 2 131.371 -0.392 -4.584 0.54 50.01 ? H22 TRS 401 A 1 HETATM 24 H H22 TRS . B . B 2 132.406 -0.865 -3.413 0.46 49.44 ? H22 TRS 401 A 1 HETATM 25 H H31 TRS . A . B 2 134.725 0.055 -3.565 0.54 59.97 ? H31 TRS 401 A 1 HETATM 26 H H31 TRS . B . B 2 133.699 -1.853 -6.526 0.46 58.54 ? H31 TRS 401 A 1 HETATM 27 H H32 TRS . A . B 2 133.844 0.544 -5.007 0.54 59.97 ? H32 TRS 401 A 1 HETATM 28 H H32 TRS . B . B 2 135.199 -2.165 -5.648 0.46 58.54 ? H32 TRS 401 A 1 HETATM 29 H HN1 TRS . A . B 2 134.633 -2.675 -3.333 0.54 47.63 ? HN1 TRS 401 A 1 HETATM 30 H HN1 TRS . B . B 2 135.129 -2.993 -3.369 0.46 44.58 ? HN1 TRS 401 A 1 HETATM 31 H HN2 TRS . A . B 2 133.059 -2.805 -2.7 0.54 47.63 ? HN2 TRS 401 A 1 HETATM 32 H HN2 TRS . B . B 2 133.742 -2.757 -2.413 0.46 44.58 ? HN2 TRS 401 A 1 HETATM 33 H HN3 TRS . A . B 2 134.003 -1.549 -2.385 0.54 47.63 ? HN3 TRS 401 A 1 HETATM 34 H HN3 TRS . B . B 2 134.533 -1.535 -3.081 0.46 44.58 ? HN3 TRS 401 A 1 HETATM 35 H HO1 TRS . A . B 2 131.763 -1.751 -7.047 0.54 60.06 ? HO1 TRS 401 A 1 HETATM 36 H HO1 TRS . B . B 2 132.588 -4.271 -3.155 0.46 62.79 ? HO1 TRS 401 A 1 HETATM 37 H HO2 TRS . A . B 2 131.561 0.927 -2.724 0.54 34.83 ? HO2 TRS 401 A 1 HETATM 38 H HO2 TRS . B . B 2 130.32 -1.864 -3.539 0.46 26.56 ? HO2 TRS 401 A 1 HETATM 39 H HO3 TRS . A . B 2 136.01 -0.086 -5.471 0.54 63.14 ? HO3 TRS 401 A 1 HETATM 40 H HO3 TRS . B . B 2 134.821 0.101 -5.973 0.46 58.52 ? HO3 TRS 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #