data_6B98 # _model_server_result.job_id SxZJsHFmp7aUp7vwGjRbEQ _model_server_result.datetime_utc '2024-11-14 19:00:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6b98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 6B98 # _exptl.entry_id 6B98 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6B98 _cell.length_a 72.034 _cell.length_b 94.186 _cell.length_c 102.526 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 114 A HIS 660 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc2 A NE2 HIS 150 A HIS 696 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc3 A OD2 ASP 151 A ASP 697 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc4 A OD1 ASP 151 A ASP 697 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc5 A OD1 ASP 262 A ASP 808 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc6 C ZN ZN . A ZN 1001 1_555 I O HOH . A HOH 1121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc7 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc8 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc9 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc10 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc11 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc12 B NE2 HIS 114 B HIS 660 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc13 B NE2 HIS 150 B HIS 696 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc14 B OD2 ASP 151 B ASP 697 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc15 B OD1 ASP 151 B ASP 697 1_555 G MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc16 B OD1 ASP 262 B ASP 808 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc17 F ZN ZN . B ZN 1001 1_555 J O HOH . B HOH 1143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc18 G MG MG . B MG 1002 1_555 J O HOH . B HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc19 G MG MG . B MG 1002 1_555 J O HOH . B HOH 1143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc20 G MG MG . B MG 1002 1_555 J O HOH . B HOH 1145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc21 G MG MG . B MG 1002 1_555 J O HOH . B HOH 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc22 G MG MG . B MG 1002 1_555 J O HOH . B HOH 1188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6B98 _atom_sites.fract_transf_matrix[1][1] 0.013882 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010617 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009754 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1001 1001 ZN ZN . D 3 MG A 1 1002 1002 MG MG . E 4 D07 A 1 1003 2000 D07 MRK . F 2 ZN B 1 1001 1001 ZN ZN . G 3 MG B 1 1002 1002 MG MG . H 4 D07 B 1 1003 2000 D07 MRK . I 5 HOH A 1 1101 216 HOH HOH . I 5 HOH A 2 1102 214 HOH HOH . I 5 HOH A 3 1103 104 HOH HOH . I 5 HOH A 4 1104 161 HOH HOH . I 5 HOH A 5 1105 126 HOH HOH . I 5 HOH A 6 1106 157 HOH HOH . I 5 HOH A 7 1107 138 HOH HOH . I 5 HOH A 8 1108 158 HOH HOH . I 5 HOH A 9 1109 122 HOH HOH . I 5 HOH A 10 1110 1005 HOH HOH . I 5 HOH A 11 1111 3 HOH HOH . I 5 HOH A 12 1112 220 HOH HOH . I 5 HOH A 13 1113 37 HOH HOH . I 5 HOH A 14 1114 4 HOH HOH . I 5 HOH A 15 1115 14 HOH HOH . I 5 HOH A 16 1116 197 HOH HOH . I 5 HOH A 17 1117 26 HOH HOH . I 5 HOH A 18 1118 87 HOH HOH . I 5 HOH A 19 1119 196 HOH HOH . I 5 HOH A 20 1120 117 HOH HOH . I 5 HOH A 21 1121 1004 HOH HOH . I 5 HOH A 22 1122 28 HOH HOH . I 5 HOH A 23 1123 53 HOH HOH . I 5 HOH A 24 1124 201 HOH HOH . I 5 HOH A 25 1125 86 HOH HOH . I 5 HOH A 26 1126 30 HOH HOH . I 5 HOH A 27 1127 1007 HOH HOH . I 5 HOH A 28 1128 6 HOH HOH . I 5 HOH A 29 1129 160 HOH HOH . I 5 HOH A 30 1130 198 HOH HOH . I 5 HOH A 31 1131 111 HOH HOH . I 5 HOH A 32 1132 132 HOH HOH . I 5 HOH A 33 1133 200 HOH HOH . I 5 HOH A 34 1134 139 HOH HOH . I 5 HOH A 35 1135 80 HOH HOH . I 5 HOH A 36 1136 61 HOH HOH . I 5 HOH A 37 1137 95 HOH HOH . I 5 HOH A 38 1138 73 HOH HOH . I 5 HOH A 39 1139 15 HOH HOH . I 5 HOH A 40 1140 140 HOH HOH . I 5 HOH A 41 1141 51 HOH HOH . I 5 HOH A 42 1142 55 HOH HOH . I 5 HOH A 43 1143 146 HOH HOH . I 5 HOH A 44 1144 207 HOH HOH . I 5 HOH A 45 1145 21 HOH HOH . I 5 HOH A 46 1146 190 HOH HOH . I 5 HOH A 47 1147 133 HOH HOH . I 5 HOH A 48 1148 2 HOH HOH . I 5 HOH A 49 1149 52 HOH HOH . I 5 HOH A 50 1150 42 HOH HOH . I 5 HOH A 51 1151 131 HOH HOH . I 5 HOH A 52 1152 212 HOH HOH . I 5 HOH A 53 1153 142 HOH HOH . I 5 HOH A 54 1154 159 HOH HOH . I 5 HOH A 55 1155 213 HOH HOH . I 5 HOH A 56 1156 127 HOH HOH . I 5 HOH A 57 1157 204 HOH HOH . I 5 HOH A 58 1158 116 HOH HOH . I 5 HOH A 59 1159 199 HOH HOH . I 5 HOH A 60 1160 1006 HOH HOH . I 5 HOH A 61 1161 167 HOH HOH . I 5 HOH A 62 1162 11 HOH HOH . I 5 HOH A 63 1163 75 HOH HOH . I 5 HOH A 64 1164 177 HOH HOH . I 5 HOH A 65 1165 1008 HOH HOH . I 5 HOH A 66 1166 154 HOH HOH . I 5 HOH A 67 1167 34 HOH HOH . I 5 HOH A 68 1168 194 HOH HOH . I 5 HOH A 69 1169 36 HOH HOH . I 5 HOH A 70 1170 134 HOH HOH . I 5 HOH A 71 1171 88 HOH HOH . I 5 HOH A 72 1172 67 HOH HOH . I 5 HOH A 73 1173 56 HOH HOH . I 5 HOH A 74 1174 49 HOH HOH . I 5 HOH A 75 1175 149 HOH HOH . I 5 HOH A 76 1176 45 HOH HOH . I 5 HOH A 77 1177 85 HOH HOH . I 5 HOH A 78 1178 17 HOH HOH . I 5 HOH A 79 1179 19 HOH HOH . I 5 HOH A 80 1180 153 HOH HOH . I 5 HOH A 81 1181 54 HOH HOH . I 5 HOH A 82 1182 110 HOH HOH . I 5 HOH A 83 1183 1003 HOH HOH . I 5 HOH A 84 1184 151 HOH HOH . I 5 HOH A 85 1185 185 HOH HOH . I 5 HOH A 86 1186 33 HOH HOH . I 5 HOH A 87 1187 64 HOH HOH . I 5 HOH A 88 1188 108 HOH HOH . I 5 HOH A 89 1189 183 HOH HOH . I 5 HOH A 90 1190 81 HOH HOH . I 5 HOH A 91 1191 7 HOH HOH . I 5 HOH A 92 1192 82 HOH HOH . I 5 HOH A 93 1193 89 HOH HOH . I 5 HOH A 94 1194 152 HOH HOH . I 5 HOH A 95 1195 170 HOH HOH . I 5 HOH A 96 1196 168 HOH HOH . I 5 HOH A 97 1197 150 HOH HOH . I 5 HOH A 98 1198 215 HOH HOH . I 5 HOH A 99 1199 69 HOH HOH . I 5 HOH A 100 1200 182 HOH HOH . I 5 HOH A 101 1201 145 HOH HOH . I 5 HOH A 102 1202 156 HOH HOH . I 5 HOH A 103 1203 100 HOH HOH . I 5 HOH A 104 1204 179 HOH HOH . I 5 HOH A 105 1205 219 HOH HOH . I 5 HOH A 106 1206 206 HOH HOH . I 5 HOH A 107 1207 50 HOH HOH . I 5 HOH A 108 1208 218 HOH HOH . I 5 HOH A 109 1209 181 HOH HOH . J 5 HOH B 1 1101 121 HOH HOH . J 5 HOH B 2 1102 1005 HOH HOH . J 5 HOH B 3 1103 128 HOH HOH . J 5 HOH B 4 1104 203 HOH HOH . J 5 HOH B 5 1105 41 HOH HOH . J 5 HOH B 6 1106 16 HOH HOH . J 5 HOH B 7 1107 123 HOH HOH . J 5 HOH B 8 1108 10 HOH HOH . J 5 HOH B 9 1109 109 HOH HOH . J 5 HOH B 10 1110 208 HOH HOH . J 5 HOH B 11 1111 129 HOH HOH . J 5 HOH B 12 1112 68 HOH HOH . J 5 HOH B 13 1113 22 HOH HOH . J 5 HOH B 14 1114 130 HOH HOH . J 5 HOH B 15 1115 57 HOH HOH . J 5 HOH B 16 1116 166 HOH HOH . J 5 HOH B 17 1117 176 HOH HOH . J 5 HOH B 18 1118 46 HOH HOH . J 5 HOH B 19 1119 35 HOH HOH . J 5 HOH B 20 1120 72 HOH HOH . J 5 HOH B 21 1121 40 HOH HOH . J 5 HOH B 22 1122 180 HOH HOH . J 5 HOH B 23 1123 188 HOH HOH . J 5 HOH B 24 1124 58 HOH HOH . J 5 HOH B 25 1125 125 HOH HOH . J 5 HOH B 26 1126 90 HOH HOH . J 5 HOH B 27 1127 38 HOH HOH . J 5 HOH B 28 1128 83 HOH HOH . J 5 HOH B 29 1129 217 HOH HOH . J 5 HOH B 30 1130 165 HOH HOH . J 5 HOH B 31 1131 162 HOH HOH . J 5 HOH B 32 1132 209 HOH HOH . J 5 HOH B 33 1133 24 HOH HOH . J 5 HOH B 34 1134 27 HOH HOH . J 5 HOH B 35 1135 107 HOH HOH . J 5 HOH B 36 1136 191 HOH HOH . J 5 HOH B 37 1137 1 HOH HOH . J 5 HOH B 38 1138 124 HOH HOH . J 5 HOH B 39 1139 144 HOH HOH . J 5 HOH B 40 1140 65 HOH HOH . J 5 HOH B 41 1141 8 HOH HOH . J 5 HOH B 42 1142 92 HOH HOH . J 5 HOH B 43 1143 1004 HOH HOH . J 5 HOH B 44 1144 141 HOH HOH . J 5 HOH B 45 1145 1006 HOH HOH . J 5 HOH B 46 1146 175 HOH HOH . J 5 HOH B 47 1147 113 HOH HOH . J 5 HOH B 48 1148 163 HOH HOH . J 5 HOH B 49 1149 29 HOH HOH . J 5 HOH B 50 1150 143 HOH HOH . J 5 HOH B 51 1151 1008 HOH HOH . J 5 HOH B 52 1152 43 HOH HOH . J 5 HOH B 53 1153 47 HOH HOH . J 5 HOH B 54 1154 187 HOH HOH . J 5 HOH B 55 1155 135 HOH HOH . J 5 HOH B 56 1156 148 HOH HOH . J 5 HOH B 57 1157 205 HOH HOH . J 5 HOH B 58 1158 59 HOH HOH . J 5 HOH B 59 1159 184 HOH HOH . J 5 HOH B 60 1160 48 HOH HOH . J 5 HOH B 61 1161 136 HOH HOH . J 5 HOH B 62 1162 44 HOH HOH . J 5 HOH B 63 1163 84 HOH HOH . J 5 HOH B 64 1164 77 HOH HOH . J 5 HOH B 65 1165 18 HOH HOH . J 5 HOH B 66 1166 115 HOH HOH . J 5 HOH B 67 1167 5 HOH HOH . J 5 HOH B 68 1168 32 HOH HOH . J 5 HOH B 69 1169 31 HOH HOH . J 5 HOH B 70 1170 66 HOH HOH . J 5 HOH B 71 1171 39 HOH HOH . J 5 HOH B 72 1172 103 HOH HOH . J 5 HOH B 73 1173 25 HOH HOH . J 5 HOH B 74 1174 13 HOH HOH . J 5 HOH B 75 1175 195 HOH HOH . J 5 HOH B 76 1176 91 HOH HOH . J 5 HOH B 77 1177 189 HOH HOH . J 5 HOH B 78 1178 76 HOH HOH . J 5 HOH B 79 1179 186 HOH HOH . J 5 HOH B 80 1180 137 HOH HOH . J 5 HOH B 81 1181 105 HOH HOH . J 5 HOH B 82 1182 192 HOH HOH . J 5 HOH B 83 1183 23 HOH HOH . J 5 HOH B 84 1184 70 HOH HOH . J 5 HOH B 85 1185 193 HOH HOH . J 5 HOH B 86 1186 9 HOH HOH . J 5 HOH B 87 1187 155 HOH HOH . J 5 HOH B 88 1188 1007 HOH HOH . J 5 HOH B 89 1189 12 HOH HOH . J 5 HOH B 90 1190 20 HOH HOH . J 5 HOH B 91 1191 102 HOH HOH . J 5 HOH B 92 1192 112 HOH HOH . J 5 HOH B 93 1193 114 HOH HOH . J 5 HOH B 94 1194 97 HOH HOH . J 5 HOH B 95 1195 94 HOH HOH . J 5 HOH B 96 1196 147 HOH HOH . J 5 HOH B 97 1197 78 HOH HOH . J 5 HOH B 98 1198 120 HOH HOH . J 5 HOH B 99 1199 210 HOH HOH . J 5 HOH B 100 1200 178 HOH HOH . J 5 HOH B 101 1201 74 HOH HOH . J 5 HOH B 102 1202 63 HOH HOH . J 5 HOH B 103 1203 106 HOH HOH . J 5 HOH B 104 1204 99 HOH HOH . J 5 HOH B 105 1205 93 HOH HOH . J 5 HOH B 106 1206 202 HOH HOH . J 5 HOH B 107 1207 101 HOH HOH . J 5 HOH B 108 1208 79 HOH HOH . J 5 HOH B 109 1209 98 HOH HOH . J 5 HOH B 110 1210 169 HOH HOH . J 5 HOH B 111 1211 62 HOH HOH . J 5 HOH B 112 1212 119 HOH HOH . J 5 HOH B 113 1213 96 HOH HOH . J 5 HOH B 114 1214 174 HOH HOH . J 5 HOH B 115 1215 172 HOH HOH . J 5 HOH B 116 1216 211 HOH HOH . J 5 HOH B 117 1217 171 HOH HOH . J 5 HOH B 118 1218 60 HOH HOH . J 5 HOH B 119 1219 71 HOH HOH . J 5 HOH B 120 1220 173 HOH HOH . J 5 HOH B 121 1221 118 HOH HOH . J 5 HOH B 122 1222 164 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 26.43 _atom_site.Cartn_y -2.772 _atom_site.Cartn_z 19.539 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.7 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #