data_6BA2 # _model_server_result.job_id 7y83lPxRw3zBroMzMnIL1A _model_server_result.datetime_utc '2024-11-18 10:19:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ba2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 6BA2 # _exptl.entry_id 6BA2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BA2 _cell.length_a 46.231 _cell.length_b 56.916 _cell.length_c 120.999 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BA2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 119 A HIS 603 1_555 A N ALY 120 A ALY 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C ALY 120 A ALY 604 1_555 A N THR 121 A THR 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 F O1 GOL . A GOL 805 1_555 J N18 7KM . A 7KM 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? metalc ? metalc1 A SG CYS 56 A CYS 540 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 A SG CYS 59 A CYS 543 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc3 A NE2 HIS 72 A HIS 556 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc4 A SG CYS 76 A CYS 560 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc5 D O3 GOL . A GOL 803 1_555 H NA NA . A NA 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 203 n n C1 C2 GOL sing 204 n n C1 H11 GOL sing 205 n n C1 H12 GOL sing 206 n n O1 HO1 GOL sing 207 n n C2 O2 GOL sing 208 n n C2 C3 GOL sing 209 n n C2 H2 GOL sing 210 n n O2 HO2 GOL sing 211 n n C3 O3 GOL sing 212 n n C3 H31 GOL sing 213 n n C3 H32 GOL sing 214 n n O3 HO3 GOL sing 215 n n # _atom_sites.entry_id 6BA2 _atom_sites.fract_transf_matrix[1][1] 0.021631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008265 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 801 505 CL CL . C 3 ZN A 1 802 506 ZN ZN . D 4 GOL A 1 803 507 GOL GOL . E 4 GOL A 1 804 508 GOL GOL . F 4 GOL A 1 805 509 GOL GOL . G 4 GOL A 1 806 510 GOL GOL . H 5 NA A 1 807 511 NA NA . I 4 GOL A 1 808 512 GOL GOL . J 6 7KM A 1 809 505 7KM LIG . K 7 HOH A 1 901 649 HOH HOH . K 7 HOH A 2 902 546 HOH HOH . K 7 HOH A 3 903 569 HOH HOH . K 7 HOH A 4 904 544 HOH HOH . K 7 HOH A 5 905 629 HOH HOH . K 7 HOH A 6 906 577 HOH HOH . K 7 HOH A 7 907 566 HOH HOH . K 7 HOH A 8 908 601 HOH HOH . K 7 HOH A 9 909 564 HOH HOH . K 7 HOH A 10 910 537 HOH HOH . K 7 HOH A 11 911 565 HOH HOH . K 7 HOH A 12 912 628 HOH HOH . K 7 HOH A 13 913 550 HOH HOH . K 7 HOH A 14 914 539 HOH HOH . K 7 HOH A 15 915 543 HOH HOH . K 7 HOH A 16 916 559 HOH HOH . K 7 HOH A 17 917 561 HOH HOH . K 7 HOH A 18 918 520 HOH HOH . K 7 HOH A 19 919 540 HOH HOH . K 7 HOH A 20 920 600 HOH HOH . K 7 HOH A 21 921 578 HOH HOH . K 7 HOH A 22 922 506 HOH HOH . K 7 HOH A 23 923 637 HOH HOH . K 7 HOH A 24 924 570 HOH HOH . K 7 HOH A 25 925 614 HOH HOH . K 7 HOH A 26 926 604 HOH HOH . K 7 HOH A 27 927 616 HOH HOH . K 7 HOH A 28 928 575 HOH HOH . K 7 HOH A 29 929 533 HOH HOH . K 7 HOH A 30 930 602 HOH HOH . K 7 HOH A 31 931 625 HOH HOH . K 7 HOH A 32 932 521 HOH HOH . K 7 HOH A 33 933 509 HOH HOH . K 7 HOH A 34 934 608 HOH HOH . K 7 HOH A 35 935 527 HOH HOH . K 7 HOH A 36 936 526 HOH HOH . K 7 HOH A 37 937 635 HOH HOH . K 7 HOH A 38 938 542 HOH HOH . K 7 HOH A 39 939 523 HOH HOH . K 7 HOH A 40 940 532 HOH HOH . K 7 HOH A 41 941 525 HOH HOH . K 7 HOH A 42 942 511 HOH HOH . K 7 HOH A 43 943 551 HOH HOH . K 7 HOH A 44 944 522 HOH HOH . K 7 HOH A 45 945 513 HOH HOH . K 7 HOH A 46 946 586 HOH HOH . K 7 HOH A 47 947 597 HOH HOH . K 7 HOH A 48 948 576 HOH HOH . K 7 HOH A 49 949 571 HOH HOH . K 7 HOH A 50 950 524 HOH HOH . K 7 HOH A 51 951 593 HOH HOH . K 7 HOH A 52 952 530 HOH HOH . K 7 HOH A 53 953 556 HOH HOH . K 7 HOH A 54 954 596 HOH HOH . K 7 HOH A 55 955 560 HOH HOH . K 7 HOH A 56 956 516 HOH HOH . K 7 HOH A 57 957 641 HOH HOH . K 7 HOH A 58 958 534 HOH HOH . K 7 HOH A 59 959 528 HOH HOH . K 7 HOH A 60 960 624 HOH HOH . K 7 HOH A 61 961 541 HOH HOH . K 7 HOH A 62 962 579 HOH HOH . K 7 HOH A 63 963 611 HOH HOH . K 7 HOH A 64 964 613 HOH HOH . K 7 HOH A 65 965 655 HOH HOH . K 7 HOH A 66 966 549 HOH HOH . K 7 HOH A 67 967 609 HOH HOH . K 7 HOH A 68 968 626 HOH HOH . K 7 HOH A 69 969 567 HOH HOH . K 7 HOH A 70 970 580 HOH HOH . K 7 HOH A 71 971 535 HOH HOH . K 7 HOH A 72 972 663 HOH HOH . K 7 HOH A 73 973 545 HOH HOH . K 7 HOH A 74 974 583 HOH HOH . K 7 HOH A 75 975 633 HOH HOH . K 7 HOH A 76 976 591 HOH HOH . K 7 HOH A 77 977 536 HOH HOH . K 7 HOH A 78 978 658 HOH HOH . K 7 HOH A 79 979 588 HOH HOH . K 7 HOH A 80 980 568 HOH HOH . K 7 HOH A 81 981 572 HOH HOH . K 7 HOH A 82 982 562 HOH HOH . K 7 HOH A 83 983 665 HOH HOH . K 7 HOH A 84 984 581 HOH HOH . K 7 HOH A 85 985 518 HOH HOH . K 7 HOH A 86 986 563 HOH HOH . K 7 HOH A 87 987 558 HOH HOH . K 7 HOH A 88 988 557 HOH HOH . K 7 HOH A 89 989 538 HOH HOH . K 7 HOH A 90 990 548 HOH HOH . K 7 HOH A 91 991 529 HOH HOH . K 7 HOH A 92 992 508 HOH HOH . K 7 HOH A 93 993 553 HOH HOH . K 7 HOH A 94 994 515 HOH HOH . K 7 HOH A 95 995 612 HOH HOH . K 7 HOH A 96 996 594 HOH HOH . K 7 HOH A 97 997 547 HOH HOH . K 7 HOH A 98 998 507 HOH HOH . K 7 HOH A 99 999 639 HOH HOH . K 7 HOH A 100 1000 657 HOH HOH . K 7 HOH A 101 1001 512 HOH HOH . K 7 HOH A 102 1002 517 HOH HOH . K 7 HOH A 103 1003 618 HOH HOH . K 7 HOH A 104 1004 598 HOH HOH . K 7 HOH A 105 1005 555 HOH HOH . K 7 HOH A 106 1006 622 HOH HOH . K 7 HOH A 107 1007 554 HOH HOH . K 7 HOH A 108 1008 631 HOH HOH . K 7 HOH A 109 1009 620 HOH HOH . K 7 HOH A 110 1010 552 HOH HOH . K 7 HOH A 111 1011 652 HOH HOH . K 7 HOH A 112 1012 510 HOH HOH . K 7 HOH A 113 1013 519 HOH HOH . K 7 HOH A 114 1014 661 HOH HOH . K 7 HOH A 115 1015 653 HOH HOH . K 7 HOH A 116 1016 514 HOH HOH . K 7 HOH A 117 1017 659 HOH HOH . K 7 HOH A 118 1018 636 HOH HOH . K 7 HOH A 119 1019 662 HOH HOH . K 7 HOH A 120 1020 660 HOH HOH . K 7 HOH A 121 1021 645 HOH HOH . K 7 HOH A 122 1022 640 HOH HOH . K 7 HOH A 123 1023 648 HOH HOH . K 7 HOH A 124 1024 606 HOH HOH . K 7 HOH A 125 1025 634 HOH HOH . K 7 HOH A 126 1026 656 HOH HOH . K 7 HOH A 127 1027 574 HOH HOH . K 7 HOH A 128 1028 642 HOH HOH . K 7 HOH A 129 1029 632 HOH HOH . K 7 HOH A 130 1030 647 HOH HOH . K 7 HOH A 131 1031 643 HOH HOH . K 7 HOH A 132 1032 654 HOH HOH . K 7 HOH A 133 1033 589 HOH HOH . K 7 HOH A 134 1034 651 HOH HOH . K 7 HOH A 135 1035 595 HOH HOH . K 7 HOH A 136 1036 664 HOH HOH . K 7 HOH A 137 1037 592 HOH HOH . K 7 HOH A 138 1038 623 HOH HOH . K 7 HOH A 139 1039 590 HOH HOH . K 7 HOH A 140 1040 615 HOH HOH . K 7 HOH A 141 1041 607 HOH HOH . K 7 HOH A 142 1042 650 HOH HOH . K 7 HOH A 143 1043 610 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -25.498 -11.519 -9.8 1 30.04 ? C1 GOL 803 A 1 HETATM 2 O O1 GOL . . . D 4 -24.595 -10.832 -8.953 1 25.13 ? O1 GOL 803 A 1 HETATM 3 C C2 GOL . . . D 4 -24.826 -11.7 -11.154 1 36.39 ? C2 GOL 803 A 1 HETATM 4 O O2 GOL . . . D 4 -24.601 -13.079 -11.387 1 47.95 ? O2 GOL 803 A 1 HETATM 5 C C3 GOL . . . D 4 -25.754 -11.141 -12.206 1 36.09 ? C3 GOL 803 A 1 HETATM 6 O O3 GOL . . . D 4 -25.006 -10.653 -13.302 1 38.92 ? O3 GOL 803 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #