data_6BA4 # _model_server_result.job_id gpBoBjLxlrzQjmWEvj58Tg _model_server_result.datetime_utc '2024-11-18 08:47:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ba4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 6BA4 # _exptl.entry_id 6BA4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BA4 _cell.length_a 46.363 _cell.length_b 57.925 _cell.length_c 120.045 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 119 A HIS 603 1_555 A N ALY 120 A ALY 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C ALY 120 A ALY 604 1_555 A N THR 121 A THR 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A O ASP 36 A ASP 520 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc2 A OD2 ASP 36 A ASP 520 1_555 E NA NA . A NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc3 A SG CYS 56 A CYS 540 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc4 A SG CYS 59 A CYS 543 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc5 A OG SER 68 A SER 552 1_555 E NA NA . A NA 804 4_575 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? metalc ? metalc6 A NE2 HIS 72 A HIS 556 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc7 A SG CYS 76 A CYS 560 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc8 C NA NA . A NA 802 1_555 H O HOH . A HOH 1028 4_475 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6BA4 _atom_sites.fract_transf_matrix[1][1] 0.021569 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 801 506 ZN ZN . C 3 NA A 1 802 507 NA NA . D 3 NA A 1 803 508 NA NA . E 3 NA A 1 804 509 NA NA . F 4 ACO A 1 805 505 ACO ACO . G 5 7L1 A 1 806 505 7L1 LIG . H 6 HOH A 1 901 671 HOH HOH . H 6 HOH A 2 902 629 HOH HOH . H 6 HOH A 3 903 531 HOH HOH . H 6 HOH A 4 904 662 HOH HOH . H 6 HOH A 5 905 595 HOH HOH . H 6 HOH A 6 906 651 HOH HOH . H 6 HOH A 7 907 583 HOH HOH . H 6 HOH A 8 908 645 HOH HOH . H 6 HOH A 9 909 594 HOH HOH . H 6 HOH A 10 910 618 HOH HOH . H 6 HOH A 11 911 677 HOH HOH . H 6 HOH A 12 912 621 HOH HOH . H 6 HOH A 13 913 655 HOH HOH . H 6 HOH A 14 914 611 HOH HOH . H 6 HOH A 15 915 632 HOH HOH . H 6 HOH A 16 916 540 HOH HOH . H 6 HOH A 17 917 665 HOH HOH . H 6 HOH A 18 918 608 HOH HOH . H 6 HOH A 19 919 659 HOH HOH . H 6 HOH A 20 920 642 HOH HOH . H 6 HOH A 21 921 643 HOH HOH . H 6 HOH A 22 922 550 HOH HOH . H 6 HOH A 23 923 562 HOH HOH . H 6 HOH A 24 924 581 HOH HOH . H 6 HOH A 25 925 526 HOH HOH . H 6 HOH A 26 926 681 HOH HOH . H 6 HOH A 27 927 599 HOH HOH . H 6 HOH A 28 928 622 HOH HOH . H 6 HOH A 29 929 529 HOH HOH . H 6 HOH A 30 930 510 HOH HOH . H 6 HOH A 31 931 541 HOH HOH . H 6 HOH A 32 932 558 HOH HOH . H 6 HOH A 33 933 537 HOH HOH . H 6 HOH A 34 934 619 HOH HOH . H 6 HOH A 35 935 588 HOH HOH . H 6 HOH A 36 936 593 HOH HOH . H 6 HOH A 37 937 666 HOH HOH . H 6 HOH A 38 938 517 HOH HOH . H 6 HOH A 39 939 519 HOH HOH . H 6 HOH A 40 940 505 HOH HOH . H 6 HOH A 41 941 535 HOH HOH . H 6 HOH A 42 942 613 HOH HOH . H 6 HOH A 43 943 660 HOH HOH . H 6 HOH A 44 944 600 HOH HOH . H 6 HOH A 45 945 549 HOH HOH . H 6 HOH A 46 946 528 HOH HOH . H 6 HOH A 47 947 516 HOH HOH . H 6 HOH A 48 948 657 HOH HOH . H 6 HOH A 49 949 631 HOH HOH . H 6 HOH A 50 950 506 HOH HOH . H 6 HOH A 51 951 636 HOH HOH . H 6 HOH A 52 952 667 HOH HOH . H 6 HOH A 53 953 591 HOH HOH . H 6 HOH A 54 954 590 HOH HOH . H 6 HOH A 55 955 648 HOH HOH . H 6 HOH A 56 956 509 HOH HOH . H 6 HOH A 57 957 584 HOH HOH . H 6 HOH A 58 958 639 HOH HOH . H 6 HOH A 59 959 652 HOH HOH . H 6 HOH A 60 960 585 HOH HOH . H 6 HOH A 61 961 555 HOH HOH . H 6 HOH A 62 962 624 HOH HOH . H 6 HOH A 63 963 650 HOH HOH . H 6 HOH A 64 964 658 HOH HOH . H 6 HOH A 65 965 615 HOH HOH . H 6 HOH A 66 966 626 HOH HOH . H 6 HOH A 67 967 571 HOH HOH . H 6 HOH A 68 968 596 HOH HOH . H 6 HOH A 69 969 606 HOH HOH . H 6 HOH A 70 970 641 HOH HOH . H 6 HOH A 71 971 612 HOH HOH . H 6 HOH A 72 972 597 HOH HOH . H 6 HOH A 73 973 578 HOH HOH . H 6 HOH A 74 974 679 HOH HOH . H 6 HOH A 75 975 628 HOH HOH . H 6 HOH A 76 976 625 HOH HOH . H 6 HOH A 77 977 634 HOH HOH . H 6 HOH A 78 978 545 HOH HOH . H 6 HOH A 79 979 553 HOH HOH . H 6 HOH A 80 980 587 HOH HOH . H 6 HOH A 81 981 530 HOH HOH . H 6 HOH A 82 982 614 HOH HOH . H 6 HOH A 83 983 538 HOH HOH . H 6 HOH A 84 984 544 HOH HOH . H 6 HOH A 85 985 577 HOH HOH . H 6 HOH A 86 986 551 HOH HOH . H 6 HOH A 87 987 518 HOH HOH . H 6 HOH A 88 988 554 HOH HOH . H 6 HOH A 89 989 589 HOH HOH . H 6 HOH A 90 990 603 HOH HOH . H 6 HOH A 91 991 565 HOH HOH . H 6 HOH A 92 992 522 HOH HOH . H 6 HOH A 93 993 610 HOH HOH . H 6 HOH A 94 994 568 HOH HOH . H 6 HOH A 95 995 586 HOH HOH . H 6 HOH A 96 996 682 HOH HOH . H 6 HOH A 97 997 520 HOH HOH . H 6 HOH A 98 998 556 HOH HOH . H 6 HOH A 99 999 673 HOH HOH . H 6 HOH A 100 1000 640 HOH HOH . H 6 HOH A 101 1001 536 HOH HOH . H 6 HOH A 102 1002 646 HOH HOH . H 6 HOH A 103 1003 620 HOH HOH . H 6 HOH A 104 1004 534 HOH HOH . H 6 HOH A 105 1005 616 HOH HOH . H 6 HOH A 106 1006 609 HOH HOH . H 6 HOH A 107 1007 602 HOH HOH . H 6 HOH A 108 1008 514 HOH HOH . H 6 HOH A 109 1009 512 HOH HOH . H 6 HOH A 110 1010 542 HOH HOH . H 6 HOH A 111 1011 552 HOH HOH . H 6 HOH A 112 1012 527 HOH HOH . H 6 HOH A 113 1013 633 HOH HOH . H 6 HOH A 114 1014 664 HOH HOH . H 6 HOH A 115 1015 580 HOH HOH . H 6 HOH A 116 1016 627 HOH HOH . H 6 HOH A 117 1017 661 HOH HOH . H 6 HOH A 118 1018 567 HOH HOH . H 6 HOH A 119 1019 523 HOH HOH . H 6 HOH A 120 1020 546 HOH HOH . H 6 HOH A 121 1021 663 HOH HOH . H 6 HOH A 122 1022 560 HOH HOH . H 6 HOH A 123 1023 543 HOH HOH . H 6 HOH A 124 1024 649 HOH HOH . H 6 HOH A 125 1025 524 HOH HOH . H 6 HOH A 126 1026 678 HOH HOH . H 6 HOH A 127 1027 676 HOH HOH . H 6 HOH A 128 1028 598 HOH HOH . H 6 HOH A 129 1029 607 HOH HOH . H 6 HOH A 130 1030 669 HOH HOH . H 6 HOH A 131 1031 605 HOH HOH . H 6 HOH A 132 1032 572 HOH HOH . H 6 HOH A 133 1033 623 HOH HOH . H 6 HOH A 134 1034 674 HOH HOH . H 6 HOH A 135 1035 680 HOH HOH . H 6 HOH A 136 1036 601 HOH HOH . H 6 HOH A 137 1037 559 HOH HOH . H 6 HOH A 138 1038 513 HOH HOH . H 6 HOH A 139 1039 604 HOH HOH . H 6 HOH A 140 1040 617 HOH HOH . H 6 HOH A 141 1041 579 HOH HOH . H 6 HOH A 142 1042 675 HOH HOH . H 6 HOH A 143 1043 672 HOH HOH . H 6 HOH A 144 1044 521 HOH HOH . H 6 HOH A 145 1045 644 HOH HOH . H 6 HOH A 146 1046 654 HOH HOH . H 6 HOH A 147 1047 630 HOH HOH . H 6 HOH A 148 1048 570 HOH HOH . H 6 HOH A 149 1049 569 HOH HOH . H 6 HOH A 150 1050 668 HOH HOH . H 6 HOH A 151 1051 635 HOH HOH . H 6 HOH A 152 1052 656 HOH HOH . H 6 HOH A 153 1053 637 HOH HOH . H 6 HOH A 154 1054 670 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 7.602 _atom_site.Cartn_y 70.384 _atom_site.Cartn_z 3.103 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 802 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #