data_6BAP # _model_server_result.job_id 1rtZN-xaVcPY6FFeODdrWA _model_server_result.datetime_utc '2024-11-05 00:52:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 6BAP # _exptl.entry_id 6BAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 584.662 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BAP _cell.length_a 83.31 _cell.length_b 83.31 _cell.length_c 475.05 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,G,H 1 1 C,F,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -158.35 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 18 A CYS 18 1_555 D CBC BLR . A BLR 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.621 ? covale ? covale2 B SG CYS 18 B CYS 18 1_555 E CBC BLR . B BLR 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.684 ? covale ? covale3 C SG CYS 18 C CYS 18 1_555 F CBC BLR . C BLR 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.707 ? # _chem_comp.formula 'C33 H36 N4 O6' _chem_comp.formula_weight 584.662 _chem_comp.id BLR _chem_comp.mon_nstd_flag . _chem_comp.name '3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Bilirubin IX alpha' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CMB C2B BLR sing 70 n n CAB CBB BLR doub 71 n n CAB C3B BLR sing 72 n n C2B C3B BLR doub 73 n n C2B C1B BLR sing 74 n n C3B C4B BLR sing 75 n n CMA C3A BLR sing 76 n n CHB C1B BLR doub 77 z n CHB C4A BLR sing 78 n n C1B NB BLR sing 79 n n C4B NB BLR sing 80 n n C4B OB BLR doub 81 n n C3A C4A BLR doub 82 n y C3A C2A BLR sing 83 n y C4A NA BLR sing 84 n y C2A CAA BLR sing 85 n n C2A C1A BLR doub 86 n y CAA CBA BLR sing 87 n n O2A CGA BLR doub 88 n n NA C1A BLR sing 89 n y CBA CGA BLR sing 90 n n CGA O1A BLR sing 91 n n C1A CHA BLR sing 92 n n CHA C4D BLR sing 93 n n O2D CGD BLR doub 94 n n CAD C3D BLR sing 95 n n CAD CBD BLR sing 96 n n C4D C3D BLR doub 97 n y C4D ND BLR sing 98 n y C3D C2D BLR sing 99 n y CGD CBD BLR sing 100 n n CGD O1D BLR sing 101 n n ND C1D BLR sing 102 n y C2D CMD BLR sing 103 n n C2D C1D BLR doub 104 n y C1D CHD BLR sing 105 n n CHD C4C BLR doub 106 z n C4C NC BLR sing 107 n n C4C C3C BLR sing 108 n n NC C1C BLR sing 109 n n CAC C3C BLR sing 110 n n CAC CBC BLR doub 111 n n C3C C2C BLR doub 112 n n C1C C2C BLR sing 113 n n C1C OC BLR doub 114 n n C2C CMC BLR sing 115 n n CHA H1 BLR sing 116 n n CHA H2 BLR sing 117 n n NA H3 BLR sing 118 n n CMA H4 BLR sing 119 n n CMA H5 BLR sing 120 n n CMA H6 BLR sing 121 n n CAA H7 BLR sing 122 n n CAA H8 BLR sing 123 n n CBA H9 BLR sing 124 n n CBA H10 BLR sing 125 n n O1A H11 BLR sing 126 n n CHB H12 BLR sing 127 n n NB H13 BLR sing 128 n n CMB H14 BLR sing 129 n n CMB H15 BLR sing 130 n n CMB H16 BLR sing 131 n n CAB H17 BLR sing 132 n n CBB H18 BLR sing 133 n n CBB H19 BLR sing 134 n n NC H20 BLR sing 135 n n CMC H21 BLR sing 136 n n CMC H22 BLR sing 137 n n CMC H23 BLR sing 138 n n CAC H24 BLR sing 139 n n CBC H25 BLR sing 140 n n CBC H26 BLR sing 141 n n CHD H27 BLR sing 142 n n ND H28 BLR sing 143 n n CMD H29 BLR sing 144 n n CMD H30 BLR sing 145 n n CMD H31 BLR sing 146 n n CAD H32 BLR sing 147 n n CAD H33 BLR sing 148 n n CBD H34 BLR sing 149 n n CBD H35 BLR sing 150 n n O1D H36 BLR sing 151 n n # _atom_sites.entry_id 6BAP _atom_sites.fract_transf_matrix[1][1] 0.012003 _atom_sites.fract_transf_matrix[1][2] 0.00693 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01386 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 BLR A 1 601 516 BLR BLA . E 2 BLR B 1 601 516 BLR BLA . F 2 BLR C 1 601 516 BLR BLA . G 3 HOH A 1 701 82 HOH HOH . G 3 HOH A 2 702 20 HOH HOH . G 3 HOH A 3 703 66 HOH HOH . G 3 HOH A 4 704 72 HOH HOH . G 3 HOH A 5 705 52 HOH HOH . G 3 HOH A 6 706 2 HOH HOH . G 3 HOH A 7 707 111 HOH HOH . G 3 HOH A 8 708 99 HOH HOH . G 3 HOH A 9 709 32 HOH HOH . G 3 HOH A 10 710 108 HOH HOH . G 3 HOH A 11 711 95 HOH HOH . G 3 HOH A 12 712 44 HOH HOH . G 3 HOH A 13 713 28 HOH HOH . G 3 HOH A 14 714 57 HOH HOH . G 3 HOH A 15 715 74 HOH HOH . G 3 HOH A 16 716 41 HOH HOH . G 3 HOH A 17 717 90 HOH HOH . G 3 HOH A 18 718 56 HOH HOH . G 3 HOH A 19 719 106 HOH HOH . G 3 HOH A 20 720 11 HOH HOH . G 3 HOH A 21 721 16 HOH HOH . G 3 HOH A 22 722 34 HOH HOH . G 3 HOH A 23 723 76 HOH HOH . G 3 HOH A 24 724 14 HOH HOH . G 3 HOH A 25 725 64 HOH HOH . G 3 HOH A 26 726 12 HOH HOH . G 3 HOH A 27 727 116 HOH HOH . G 3 HOH A 28 728 13 HOH HOH . G 3 HOH A 29 729 101 HOH HOH . G 3 HOH A 30 730 100 HOH HOH . G 3 HOH A 31 731 15 HOH HOH . G 3 HOH A 32 732 70 HOH HOH . G 3 HOH A 33 733 47 HOH HOH . G 3 HOH A 34 734 60 HOH HOH . G 3 HOH A 35 735 102 HOH HOH . G 3 HOH A 36 736 68 HOH HOH . G 3 HOH A 37 737 26 HOH HOH . G 3 HOH A 38 738 121 HOH HOH . G 3 HOH A 39 739 123 HOH HOH . G 3 HOH A 40 740 46 HOH HOH . G 3 HOH A 41 741 29 HOH HOH . G 3 HOH A 42 742 120 HOH HOH . G 3 HOH A 43 743 115 HOH HOH . G 3 HOH A 44 744 118 HOH HOH . G 3 HOH A 45 745 122 HOH HOH . G 3 HOH A 46 746 119 HOH HOH . H 3 HOH B 1 701 86 HOH HOH . H 3 HOH B 2 702 109 HOH HOH . H 3 HOH B 3 703 23 HOH HOH . H 3 HOH B 4 704 4 HOH HOH . H 3 HOH B 5 705 112 HOH HOH . H 3 HOH B 6 706 124 HOH HOH . H 3 HOH B 7 707 38 HOH HOH . H 3 HOH B 8 708 80 HOH HOH . H 3 HOH B 9 709 50 HOH HOH . H 3 HOH B 10 710 18 HOH HOH . H 3 HOH B 11 711 25 HOH HOH . H 3 HOH B 12 712 43 HOH HOH . H 3 HOH B 13 713 85 HOH HOH . H 3 HOH B 14 714 49 HOH HOH . H 3 HOH B 15 715 37 HOH HOH . H 3 HOH B 16 716 54 HOH HOH . H 3 HOH B 17 717 77 HOH HOH . H 3 HOH B 18 718 71 HOH HOH . H 3 HOH B 19 719 42 HOH HOH . H 3 HOH B 20 720 17 HOH HOH . H 3 HOH B 21 721 8 HOH HOH . H 3 HOH B 22 722 33 HOH HOH . H 3 HOH B 23 723 75 HOH HOH . H 3 HOH B 24 724 113 HOH HOH . H 3 HOH B 25 725 94 HOH HOH . H 3 HOH B 26 726 63 HOH HOH . H 3 HOH B 27 727 87 HOH HOH . H 3 HOH B 28 728 59 HOH HOH . H 3 HOH B 29 729 81 HOH HOH . H 3 HOH B 30 730 40 HOH HOH . H 3 HOH B 31 731 93 HOH HOH . H 3 HOH B 32 732 110 HOH HOH . H 3 HOH B 33 733 45 HOH HOH . H 3 HOH B 34 734 65 HOH HOH . H 3 HOH B 35 735 7 HOH HOH . H 3 HOH B 36 736 30 HOH HOH . H 3 HOH B 37 737 5 HOH HOH . H 3 HOH B 38 738 58 HOH HOH . H 3 HOH B 39 739 84 HOH HOH . H 3 HOH B 40 740 24 HOH HOH . H 3 HOH B 41 741 114 HOH HOH . H 3 HOH B 42 742 117 HOH HOH . I 3 HOH C 1 701 91 HOH HOH . I 3 HOH C 2 702 78 HOH HOH . I 3 HOH C 3 703 51 HOH HOH . I 3 HOH C 4 704 21 HOH HOH . I 3 HOH C 5 705 89 HOH HOH . I 3 HOH C 6 706 36 HOH HOH . I 3 HOH C 7 707 96 HOH HOH . I 3 HOH C 8 708 9 HOH HOH . I 3 HOH C 9 709 27 HOH HOH . I 3 HOH C 10 710 104 HOH HOH . I 3 HOH C 11 711 19 HOH HOH . I 3 HOH C 12 712 35 HOH HOH . I 3 HOH C 13 713 97 HOH HOH . I 3 HOH C 14 714 73 HOH HOH . I 3 HOH C 15 715 53 HOH HOH . I 3 HOH C 16 716 105 HOH HOH . I 3 HOH C 17 717 79 HOH HOH . I 3 HOH C 18 718 62 HOH HOH . I 3 HOH C 19 719 103 HOH HOH . I 3 HOH C 20 720 39 HOH HOH . I 3 HOH C 21 721 31 HOH HOH . I 3 HOH C 22 722 1 HOH HOH . I 3 HOH C 23 723 88 HOH HOH . I 3 HOH C 24 724 83 HOH HOH . I 3 HOH C 25 725 3 HOH HOH . I 3 HOH C 26 726 22 HOH HOH . I 3 HOH C 27 727 48 HOH HOH . I 3 HOH C 28 728 61 HOH HOH . I 3 HOH C 29 729 10 HOH HOH . I 3 HOH C 30 730 98 HOH HOH . I 3 HOH C 31 731 92 HOH HOH . I 3 HOH C 32 732 69 HOH HOH . I 3 HOH C 33 733 55 HOH HOH . I 3 HOH C 34 734 67 HOH HOH . I 3 HOH C 35 735 6 HOH HOH . I 3 HOH C 36 736 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLR . . . F 2 28.697 3.046 -80.238 1 94.04 ? CHA BLR 601 C 1 HETATM 2 N NA BLR . . . F 2 28.837 2.317 -82.717 1 92.19 ? NA BLR 601 C 1 HETATM 3 C C1A BLR . . . F 2 28.13 2.696 -81.627 1 92.63 ? C1A BLR 601 C 1 HETATM 4 C C2A BLR . . . F 2 26.806 2.718 -81.996 1 86.6 ? C2A BLR 601 C 1 HETATM 5 C C3A BLR . . . F 2 26.708 2.355 -83.289 1 91.79 ? C3A BLR 601 C 1 HETATM 6 C C4A BLR . . . F 2 27.982 2.099 -83.748 1 92.54 ? C4A BLR 601 C 1 HETATM 7 C CMA BLR . . . F 2 25.379 2.249 -84.048 1 95.15 ? CMA BLR 601 C 1 HETATM 8 C CAA BLR . . . F 2 25.619 3.092 -81.116 1 87.39 ? CAA BLR 601 C 1 HETATM 9 C CBA BLR . . . F 2 25.289 4.566 -81.373 1 90.57 ? CBA BLR 601 C 1 HETATM 10 C CGA BLR . . . F 2 23.852 4.718 -81.888 1 92.71 ? CGA BLR 601 C 1 HETATM 11 O O1A BLR . . . F 2 23.278 3.732 -82.436 1 98.17 ? O1A BLR 601 C 1 HETATM 12 O O2A BLR . . . F 2 23.237 5.82 -81.755 1 86.55 ? O2A BLR 601 C 1 HETATM 13 C CHB BLR . . . F 2 28.491 1.657 -85.129 1 97.51 ? CHB BLR 601 C 1 HETATM 14 N NB BLR . . . F 2 26.495 1.935 -86.771 1 94.29 ? NB BLR 601 C 1 HETATM 15 C C1B BLR . . . F 2 27.831 1.394 -86.238 1 100.35 ? C1B BLR 601 C 1 HETATM 16 C C2B BLR . . . F 2 28.326 0.454 -87.283 1 100.99 ? C2B BLR 601 C 1 HETATM 17 C C3B BLR . . . F 2 27.413 0.37 -88.372 1 106.05 ? C3B BLR 601 C 1 HETATM 18 C C4B BLR . . . F 2 26.248 1.263 -88.128 1 98.88 ? C4B BLR 601 C 1 HETATM 19 C CMB BLR . . . F 2 29.643 -0.305 -87.163 1 99.23 ? CMB BLR 601 C 1 HETATM 20 O OB BLR . . . F 2 25.316 1.423 -88.841 1 99.53 ? OB BLR 601 C 1 HETATM 21 C CAB BLR . . . F 2 27.579 -0.48 -89.631 1 107.8 ? CAB BLR 601 C 1 HETATM 22 C CBB BLR . . . F 2 27.321 0.063 -90.803 1 99.69 ? CBB BLR 601 C 1 HETATM 23 N NC BLR . . . F 2 33.562 3.398 -83.114 1 106.46 ? NC BLR 601 C 1 HETATM 24 C C1C BLR . . . F 2 34.609 2.952 -84.148 1 114.11 ? C1C BLR 601 C 1 HETATM 25 C C2C BLR . . . F 2 35.86 2.653 -83.382 1 113.12 ? C2C BLR 601 C 1 HETATM 26 C C3C BLR . . . F 2 35.664 2.885 -81.993 1 108.9 ? C3C BLR 601 C 1 HETATM 27 C C4C BLR . . . F 2 34.273 3.328 -81.754 1 107.16 ? C4C BLR 601 C 1 HETATM 28 C CMC BLR . . . F 2 37.15 2.159 -84.028 1 118.25 ? CMC BLR 601 C 1 HETATM 29 O OC BLR . . . F 2 34.459 2.856 -85.318 1 112.34 ? OC BLR 601 C 1 HETATM 30 C CAC BLR . . . F 2 36.643 2.699 -80.831 1 107.96 ? CAC BLR 601 C 1 HETATM 31 C CBC BLR . . . F 2 37.942 2.916 -80.892 1 113.83 ? CBC BLR 601 C 1 HETATM 32 C CHD BLR . . . F 2 33.825 3.609 -80.569 1 101.71 ? CHD BLR 601 C 1 HETATM 33 N ND BLR . . . F 2 31.153 3.251 -80.915 1 94.14 ? ND BLR 601 C 1 HETATM 34 C C1D BLR . . . F 2 32.391 3.467 -80.124 1 96.39 ? C1D BLR 601 C 1 HETATM 35 C C2D BLR . . . F 2 32.069 3.575 -78.698 1 98.09 ? C2D BLR 601 C 1 HETATM 36 C C3D BLR . . . F 2 30.63 3.421 -78.555 1 98.67 ? C3D BLR 601 C 1 HETATM 37 C C4D BLR . . . F 2 29.988 3.215 -79.949 1 94.17 ? C4D BLR 601 C 1 HETATM 38 C CMD BLR . . . F 2 33.08 3.795 -77.576 1 98.85 ? CMD BLR 601 C 1 HETATM 39 C CAD BLR . . . F 2 29.987 3.479 -77.173 1 95.18 ? CAD BLR 601 C 1 HETATM 40 C CBD BLR . . . F 2 29.352 4.84 -76.955 1 88.35 ? CBD BLR 601 C 1 HETATM 41 C CGD BLR . . . F 2 27.945 4.64 -76.394 1 93.27 ? CGD BLR 601 C 1 HETATM 42 O O1D BLR . . . F 2 27.07 3.965 -77.008 1 87.14 ? O1D BLR 601 C 1 HETATM 43 O O2D BLR . . . F 2 27.66 5.186 -75.295 1 97.94 ? O2D BLR 601 C 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #