data_6BAT # _model_server_result.job_id E7SGWRpF8jNcnRgCkksEAQ _model_server_result.datetime_utc '2024-11-16 08:18:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":503}' # _entry.id 6BAT # _exptl.entry_id 6BAT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 133.103 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ASPARTIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BAT _cell.length_a 114.729 _cell.length_b 114.729 _cell.length_c 322.508 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BAT _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 278 A SER 278 1_555 D NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc2 A O GLY 306 A GLY 306 1_555 D NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? metalc ? metalc3 A O THR 308 A THR 308 1_555 E NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc4 A O ASN 310 A ASN 310 1_555 D NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc5 A O SER 349 A SER 349 1_555 E NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc6 A O ILE 350 A ILE 350 1_555 E NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? metalc ? metalc7 A O THR 352 A THR 352 1_555 E NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc8 A O ASN 401 A ASN 401 1_555 D NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? metalc ? metalc9 A OD2 ASP 405 A ASP 405 1_555 D NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc10 B O GLY 306 B GLY 306 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc11 B O THR 308 B THR 308 1_555 H NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc12 B O ASN 310 B ASN 310 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc13 B O SER 349 B SER 349 1_555 H NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc14 B O ILE 350 B ILE 350 1_555 H NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc15 B O THR 352 B THR 352 1_555 H NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc16 B O ASN 401 B ASN 401 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.117 ? metalc ? metalc17 B OD2 ASP 405 B ASP 405 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc18 C OG SER 278 C SER 278 1_555 J NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? metalc ? metalc19 C O GLY 306 C GLY 306 1_555 J NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc20 C O THR 308 C THR 308 1_555 K NA NA . C NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc21 C O ASN 310 C ASN 310 1_555 J NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? metalc ? metalc22 C O SER 349 C SER 349 1_555 K NA NA . C NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc23 C O ILE 350 C ILE 350 1_555 K NA NA . C NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? metalc ? metalc24 C O THR 352 C THR 352 1_555 K NA NA . C NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc25 C OD2 ASP 405 C ASP 405 1_555 J NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? # _chem_comp.formula 'C4 H7 N O4' _chem_comp.formula_weight 133.103 _chem_comp.id ASP _chem_comp.mon_nstd_flag y _chem_comp.name 'ASPARTIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ASP sing 55 n n N H ASP sing 56 n n N H2 ASP sing 57 n n CA C ASP sing 58 n n CA CB ASP sing 59 n n CA HA ASP sing 60 n n C O ASP doub 61 n n C OXT ASP sing 62 n n CB CG ASP sing 63 n n CB HB2 ASP sing 64 n n CB HB3 ASP sing 65 n n CG OD1 ASP doub 66 n n CG OD2 ASP sing 67 n n OD2 HD2 ASP sing 68 n n OXT HXT ASP sing 69 n n # _atom_sites.entry_id 6BAT _atom_sites.fract_transf_matrix[1][1] 0.008716 _atom_sites.fract_transf_matrix[1][2] 0.005032 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NA A 1 501 423 NA NA . E 2 NA A 1 502 424 NA NA . F 3 ASP A 1 503 425 ASP ASP . G 2 NA B 1 501 423 NA NA . H 2 NA B 1 502 424 NA NA . I 3 ASP B 1 503 425 ASP ASP . J 2 NA C 1 501 423 NA NA . K 2 NA C 1 502 424 NA NA . L 3 ASP C 1 503 425 ASP ASP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ASP . . . L 3 -44.712 -27.349 4.75 1 108.13 ? N ASP 503 C 1 HETATM 2 C CA ASP . . . L 3 -45.918 -26.606 5.214 1 108.32 ? CA ASP 503 C 1 HETATM 3 C C ASP . . . L 3 -46.387 -25.626 4.142 1 108.1 ? C ASP 503 C 1 HETATM 4 O O ASP . . . L 3 -45.613 -24.789 3.681 1 107.66 ? O ASP 503 C 1 HETATM 5 C CB ASP . . . L 3 -45.605 -25.874 6.517 1 108.54 ? CB ASP 503 C 1 HETATM 6 C CG ASP . . . L 3 -46.718 -25.982 7.532 1 109.44 ? CG ASP 503 C 1 HETATM 7 O OD1 ASP . . . L 3 -47.843 -26.391 7.174 1 110.05 ? OD1 ASP 503 C 1 HETATM 8 O OD2 ASP . . . L 3 -46.457 -25.659 8.706 1 110.42 ? OD2 ASP 503 C 1 HETATM 9 O OXT ASP . . . L 3 -47.537 -25.665 3.697 1 108.17 ? OXT ASP 503 C 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #