data_6BAV # _model_server_result.job_id UvEdWQEkLc9VLryh2ZF7Xw _model_server_result.datetime_utc '2024-11-16 10:39:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bav # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 6BAV # _exptl.entry_id 6BAV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 211.281 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZYLCYSTEINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BAV _cell.length_a 114.659 _cell.length_b 114.659 _cell.length_c 321.449 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BAV _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 306 A GLY 306 1_555 D NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc2 A O ASN 310 A ASN 310 1_555 D NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc3 B O GLY 306 B GLY 306 1_555 F NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc4 B O ASN 310 B ASN 310 1_555 F NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc5 C O GLY 306 C GLY 306 1_555 H NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc6 C O ASN 310 C ASN 310 1_555 H NA NA . C NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? # _chem_comp.formula 'C10 H13 N O2 S' _chem_comp.formula_weight 211.281 _chem_comp.id BCS _chem_comp.mon_nstd_flag n _chem_comp.name BENZYLCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA BCS sing 70 n n N H BCS sing 71 n n N H2 BCS sing 72 n n CA CB BCS sing 73 n n CA C BCS sing 74 n n CA HA BCS sing 75 n n CB SG BCS sing 76 n n CB HB2 BCS sing 77 n n CB HB3 BCS sing 78 n n SG CD BCS sing 79 n n CD CE BCS sing 80 n n CD HD2 BCS sing 81 n n CD HD3 BCS sing 82 n n CE CZ1 BCS doub 83 n y CE CZ2 BCS sing 84 n y CZ1 CT1 BCS sing 85 n y CZ1 HZ1 BCS sing 86 n n CZ2 CT2 BCS doub 87 n y CZ2 HZ2 BCS sing 88 n n CT1 CH BCS doub 89 n y CT1 HT1 BCS sing 90 n n CT2 CH BCS sing 91 n y CT2 HT2 BCS sing 92 n n CH HH BCS sing 93 n n C O BCS doub 94 n n C OXT BCS sing 95 n n OXT HXT BCS sing 96 n n # _atom_sites.entry_id 6BAV _atom_sites.fract_transf_matrix[1][1] 0.008722 _atom_sites.fract_transf_matrix[1][2] 0.005035 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NA A 1 501 423 NA NA . E 3 BCS A 1 502 425 BCS BCS . F 2 NA B 1 501 423 NA NA . G 3 BCS B 1 502 425 BCS BCS . H 2 NA C 1 501 423 NA NA . I 3 BCS C 1 502 425 BCS BCS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N BCS . . . E 3 -9.086 3.512 -6.82 1 124.08 ? N BCS 502 A 1 HETATM 2 C CA BCS . . . E 3 -9.821 2.413 -7.463 1 123.71 ? CA BCS 502 A 1 HETATM 3 C CB BCS . . . E 3 -10.942 1.928 -6.538 1 124.16 ? CB BCS 502 A 1 HETATM 4 S SG BCS . . . E 3 -11.117 0.104 -6.454 1 127.07 ? SG BCS 502 A 1 HETATM 5 C CD BCS . . . E 3 -9.35 -0.389 -6.51 1 126.66 ? CD BCS 502 A 1 HETATM 6 C CE BCS . . . E 3 -8.983 -1.205 -5.31 1 127.56 ? CE BCS 502 A 1 HETATM 7 C CZ1 BCS . . . E 3 -9.421 -0.836 -4.028 1 127.58 ? CZ1 BCS 502 A 1 HETATM 8 C CZ2 BCS . . . E 3 -8.141 -2.312 -5.47 1 127.66 ? CZ2 BCS 502 A 1 HETATM 9 C CT1 BCS . . . E 3 -9.024 -1.577 -2.912 1 128.23 ? CT1 BCS 502 A 1 HETATM 10 C CT2 BCS . . . E 3 -7.737 -3.052 -4.357 1 128.97 ? CT2 BCS 502 A 1 HETATM 11 C CH BCS . . . E 3 -8.181 -2.68 -3.083 1 129.52 ? CH BCS 502 A 1 HETATM 12 C C BCS . . . E 3 -10.381 2.842 -8.829 1 122.45 ? C BCS 502 A 1 HETATM 13 O O BCS . . . E 3 -10.4 1.968 -9.721 1 122.26 ? O BCS 502 A 1 HETATM 14 O OXT BCS . . . E 3 -10.776 4.023 -8.953 1 121.61 ? OXT BCS 502 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #