data_6BAY
#
_model_server_result.job_id            EJfzquzVZVxXUoAoPVGE0A 
_model_server_result.datetime_utc      '2025-07-17 13:54:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bay 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    6BAY 
#
_exptl.entry_id    6BAY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              584.662 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6BAY 
_cell.length_a            84.23 
_cell.length_b            84.23 
_cell.length_c            477.99 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BAY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E 1 1 
C,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -159.33 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 18 A CYS 18 1_555 D CBC BLR . A BLR 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.672 ? 
covale ? covale2 B SG CYS 18 B CYS 18 1_555 E CBC BLR . B BLR 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.678 ? 
covale ? covale3 C SG CYS 18 C CYS 18 1_555 F CBC BLR . C BLR 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.59 ? 
#
_chem_comp.formula           'C33 H36 N4 O6' 
_chem_comp.formula_weight    584.662 
_chem_comp.id                BLR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Bilirubin IX alpha' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CMB C2B BLR sing 70 n n 
CAB CBB BLR doub 71 n n 
CAB C3B BLR sing 72 n n 
C2B C3B BLR doub 73 n n 
C2B C1B BLR sing 74 n n 
C3B C4B BLR sing 75 n n 
CMA C3A BLR sing 76 n n 
CHB C1B BLR doub 77 z n 
CHB C4A BLR sing 78 n n 
C1B NB BLR sing 79 n n 
C4B NB BLR sing 80 n n 
C4B OB BLR doub 81 n n 
C3A C4A BLR doub 82 n y 
C3A C2A BLR sing 83 n y 
C4A NA BLR sing 84 n y 
C2A CAA BLR sing 85 n n 
C2A C1A BLR doub 86 n y 
CAA CBA BLR sing 87 n n 
O2A CGA BLR doub 88 n n 
NA C1A BLR sing 89 n y 
CBA CGA BLR sing 90 n n 
CGA O1A BLR sing 91 n n 
C1A CHA BLR sing 92 n n 
CHA C4D BLR sing 93 n n 
O2D CGD BLR doub 94 n n 
CAD C3D BLR sing 95 n n 
CAD CBD BLR sing 96 n n 
C4D C3D BLR doub 97 n y 
C4D ND BLR sing 98 n y 
C3D C2D BLR sing 99 n y 
CGD CBD BLR sing 100 n n 
CGD O1D BLR sing 101 n n 
ND C1D BLR sing 102 n y 
C2D CMD BLR sing 103 n n 
C2D C1D BLR doub 104 n y 
C1D CHD BLR sing 105 n n 
CHD C4C BLR doub 106 z n 
C4C NC BLR sing 107 n n 
C4C C3C BLR sing 108 n n 
NC C1C BLR sing 109 n n 
CAC C3C BLR sing 110 n n 
CAC CBC BLR doub 111 n n 
C3C C2C BLR doub 112 n n 
C1C C2C BLR sing 113 n n 
C1C OC BLR doub 114 n n 
C2C CMC BLR sing 115 n n 
CHA H1 BLR sing 116 n n 
CHA H2 BLR sing 117 n n 
NA H3 BLR sing 118 n n 
CMA H4 BLR sing 119 n n 
CMA H5 BLR sing 120 n n 
CMA H6 BLR sing 121 n n 
CAA H7 BLR sing 122 n n 
CAA H8 BLR sing 123 n n 
CBA H9 BLR sing 124 n n 
CBA H10 BLR sing 125 n n 
O1A H11 BLR sing 126 n n 
CHB H12 BLR sing 127 n n 
NB H13 BLR sing 128 n n 
CMB H14 BLR sing 129 n n 
CMB H15 BLR sing 130 n n 
CMB H16 BLR sing 131 n n 
CAB H17 BLR sing 132 n n 
CBB H18 BLR sing 133 n n 
CBB H19 BLR sing 134 n n 
NC H20 BLR sing 135 n n 
CMC H21 BLR sing 136 n n 
CMC H22 BLR sing 137 n n 
CMC H23 BLR sing 138 n n 
CAC H24 BLR sing 139 n n 
CBC H25 BLR sing 140 n n 
CBC H26 BLR sing 141 n n 
CHD H27 BLR sing 142 n n 
ND H28 BLR sing 143 n n 
CMD H29 BLR sing 144 n n 
CMD H30 BLR sing 145 n n 
CMD H31 BLR sing 146 n n 
CAD H32 BLR sing 147 n n 
CAD H33 BLR sing 148 n n 
CBD H34 BLR sing 149 n n 
CBD H35 BLR sing 150 n n 
O1D H36 BLR sing 151 n n 
#
_atom_sites.entry_id                     6BAY 
_atom_sites.fract_transf_matrix[1][1]    0.011872 
_atom_sites.fract_transf_matrix[1][2]    0.006854 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013709 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002092 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 BLR A 1 601 516 BLR BLA . 
E 2 BLR B 1 601 516 BLR BLA . 
F 2 BLR C 1 601 516 BLR BLA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA BLR . . . D 2 5.886 29.994 -31.035 1 110.97 ? CHA BLR 601 A 1 
HETATM 2 N NA BLR . . . D 2 7.234 29.53 -33.157 1 102 ? NA BLR 601 A 1 
HETATM 3 C C1A BLR . . . D 2 6.469 29.097 -32.126 1 101.59 ? C1A BLR 601 A 1 
HETATM 4 C C2A BLR . . . D 2 6.276 27.719 -32.253 1 101.31 ? C2A BLR 601 A 1 
HETATM 5 C C3A BLR . . . D 2 6.943 27.319 -33.353 1 96.62 ? C3A BLR 601 A 1 
HETATM 6 C C4A BLR . . . D 2 7.53 28.423 -33.921 1 103.66 ? C4A BLR 601 A 1 
HETATM 7 C CMA BLR . . . D 2 7.011 25.882 -33.838 1 91.64 ? CMA BLR 601 A 1 
HETATM 8 C CAA BLR . . . D 2 5.499 26.757 -31.326 1 99.48 ? CAA BLR 601 A 1 
HETATM 9 C CBA BLR . . . D 2 3.974 26.835 -31.417 1 99.43 ? CBA BLR 601 A 1 
HETATM 10 C CGA BLR . . . D 2 3.377 26.052 -32.605 1 103.64 ? CGA BLR 601 A 1 
HETATM 11 O O1A BLR . . . D 2 3.982 25.113 -33.199 1 103.54 ? O1A BLR 601 A 1 
HETATM 12 O O2A BLR . . . D 2 2.224 26.355 -33.016 1 104.45 ? O2A BLR 601 A 1 
HETATM 13 C CHB BLR . . . D 2 8.395 28.443 -35.176 1 98.52 ? CHB BLR 601 A 1 
HETATM 14 N NB BLR . . . D 2 6.967 26.889 -36.592 1 99.15 ? NB BLR 601 A 1 
HETATM 15 C C1B BLR . . . D 2 8.23 27.648 -36.19 1 96.39 ? C1B BLR 601 A 1 
HETATM 16 C C2B BLR . . . D 2 9.261 27.314 -37.21 1 92.53 ? C2B BLR 601 A 1 
HETATM 17 C C3B BLR . . . D 2 8.752 26.428 -38.167 1 82.85 ? C3B BLR 601 A 1 
HETATM 18 C C4B BLR . . . D 2 7.339 26.107 -37.864 1 92.21 ? C4B BLR 601 A 1 
HETATM 19 C CMB BLR . . . D 2 10.684 27.865 -37.234 1 96.48 ? CMB BLR 601 A 1 
HETATM 20 O OB BLR . . . D 2 6.63 25.397 -38.474 1 93.94 ? OB BLR 601 A 1 
HETATM 21 C CAB BLR . . . D 2 9.574 25.917 -39.332 1 91.49 ? CAB BLR 601 A 1 
HETATM 22 C CBB BLR . . . D 2 9.011 25.326 -40.368 1 95.29 ? CBB BLR 601 A 1 
HETATM 23 N NC BLR . . . D 2 8.202 34.402 -33.67 1 126.03 ? NC BLR 601 A 1 
HETATM 24 C C1C BLR . . . D 2 9.005 35.199 -34.722 1 116 ? C1C BLR 601 A 1 
HETATM 25 C C2C BLR . . . D 2 9.661 36.305 -34.004 1 117.12 ? C2C BLR 601 A 1 
HETATM 26 C C3C BLR . . . D 2 9.336 36.262 -32.618 1 124.76 ? C3C BLR 601 A 1 
HETATM 27 C C4C BLR . . . D 2 8.432 35.097 -32.308 1 121.35 ? C4C BLR 601 A 1 
HETATM 28 C CMC BLR . . . D 2 10.55 37.31 -34.718 0.73 127.54 ? CMC BLR 601 A 1 
HETATM 29 O OC BLR . . . D 2 9.099 35.008 -35.876 1 112.35 ? OC BLR 601 A 1 
HETATM 30 C CAC BLR . . . D 2 9.856 37.238 -31.559 1 126.86 ? CAC BLR 601 A 1 
HETATM 31 C CBC BLR . . . D 2 9.908 38.543 -31.715 1 121.05 ? CBC BLR 601 A 1 
HETATM 32 C CHD BLR . . . D 2 7.952 34.774 -31.117 1 114.69 ? CHD BLR 601 A 1 
HETATM 33 N ND BLR . . . D 2 7.041 32.238 -31.588 1 116.68 ? ND BLR 601 A 1 
HETATM 34 C C1D BLR . . . D 2 7.258 33.46 -30.744 1 114.06 ? C1D BLR 601 A 1 
HETATM 35 C C2D BLR . . . D 2 6.684 33.233 -29.392 1 107.08 ? C2D BLR 601 A 1 
HETATM 36 C C3D BLR . . . D 2 6.1 31.895 -29.354 1 108.18 ? C3D BLR 601 A 1 
HETATM 37 C C4D BLR . . . D 2 6.305 31.222 -30.727 1 116.48 ? C4D BLR 601 A 1 
HETATM 38 C CMD BLR . . . D 2 6.68 34.237 -28.246 1 116.72 ? CMD BLR 601 A 1 
HETATM 39 C CAD BLR . . . D 2 5.348 31.276 -28.17 1 108.22 ? CAD BLR 601 A 1 
HETATM 40 C CBD BLR . . . D 2 3.843 31.228 -28.541 1 104.66 ? CBD BLR 601 A 1 
HETATM 41 C CGD BLR . . . D 2 2.883 30.767 -27.421 1 109.37 ? CGD BLR 601 A 1 
HETATM 42 O O1D BLR . . . D 2 2.923 29.631 -26.868 1 111.44 ? O1D BLR 601 A 1 
HETATM 43 O O2D BLR . . . D 2 1.993 31.524 -26.998 1 108.17 ? O2D BLR 601 A 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           217 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#