data_6BAY # _model_server_result.job_id 7pnghRWY6nEG_Gmv0SkQFQ _model_server_result.datetime_utc '2025-07-17 13:58:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bay # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 6BAY # _exptl.entry_id 6BAY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 584.662 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BAY _cell.length_a 84.23 _cell.length_b 84.23 _cell.length_c 477.99 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BAY _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E 1 1 C,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -159.33 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 18 A CYS 18 1_555 D CBC BLR . A BLR 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.672 ? covale ? covale2 B SG CYS 18 B CYS 18 1_555 E CBC BLR . B BLR 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.678 ? covale ? covale3 C SG CYS 18 C CYS 18 1_555 F CBC BLR . C BLR 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.59 ? # _chem_comp.formula 'C33 H36 N4 O6' _chem_comp.formula_weight 584.662 _chem_comp.id BLR _chem_comp.mon_nstd_flag . _chem_comp.name '3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Bilirubin IX alpha' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CMB C2B BLR sing 70 n n CAB CBB BLR doub 71 n n CAB C3B BLR sing 72 n n C2B C3B BLR doub 73 n n C2B C1B BLR sing 74 n n C3B C4B BLR sing 75 n n CMA C3A BLR sing 76 n n CHB C1B BLR doub 77 z n CHB C4A BLR sing 78 n n C1B NB BLR sing 79 n n C4B NB BLR sing 80 n n C4B OB BLR doub 81 n n C3A C4A BLR doub 82 n y C3A C2A BLR sing 83 n y C4A NA BLR sing 84 n y C2A CAA BLR sing 85 n n C2A C1A BLR doub 86 n y CAA CBA BLR sing 87 n n O2A CGA BLR doub 88 n n NA C1A BLR sing 89 n y CBA CGA BLR sing 90 n n CGA O1A BLR sing 91 n n C1A CHA BLR sing 92 n n CHA C4D BLR sing 93 n n O2D CGD BLR doub 94 n n CAD C3D BLR sing 95 n n CAD CBD BLR sing 96 n n C4D C3D BLR doub 97 n y C4D ND BLR sing 98 n y C3D C2D BLR sing 99 n y CGD CBD BLR sing 100 n n CGD O1D BLR sing 101 n n ND C1D BLR sing 102 n y C2D CMD BLR sing 103 n n C2D C1D BLR doub 104 n y C1D CHD BLR sing 105 n n CHD C4C BLR doub 106 z n C4C NC BLR sing 107 n n C4C C3C BLR sing 108 n n NC C1C BLR sing 109 n n CAC C3C BLR sing 110 n n CAC CBC BLR doub 111 n n C3C C2C BLR doub 112 n n C1C C2C BLR sing 113 n n C1C OC BLR doub 114 n n C2C CMC BLR sing 115 n n CHA H1 BLR sing 116 n n CHA H2 BLR sing 117 n n NA H3 BLR sing 118 n n CMA H4 BLR sing 119 n n CMA H5 BLR sing 120 n n CMA H6 BLR sing 121 n n CAA H7 BLR sing 122 n n CAA H8 BLR sing 123 n n CBA H9 BLR sing 124 n n CBA H10 BLR sing 125 n n O1A H11 BLR sing 126 n n CHB H12 BLR sing 127 n n NB H13 BLR sing 128 n n CMB H14 BLR sing 129 n n CMB H15 BLR sing 130 n n CMB H16 BLR sing 131 n n CAB H17 BLR sing 132 n n CBB H18 BLR sing 133 n n CBB H19 BLR sing 134 n n NC H20 BLR sing 135 n n CMC H21 BLR sing 136 n n CMC H22 BLR sing 137 n n CMC H23 BLR sing 138 n n CAC H24 BLR sing 139 n n CBC H25 BLR sing 140 n n CBC H26 BLR sing 141 n n CHD H27 BLR sing 142 n n ND H28 BLR sing 143 n n CMD H29 BLR sing 144 n n CMD H30 BLR sing 145 n n CMD H31 BLR sing 146 n n CAD H32 BLR sing 147 n n CAD H33 BLR sing 148 n n CBD H34 BLR sing 149 n n CBD H35 BLR sing 150 n n O1D H36 BLR sing 151 n n # _atom_sites.entry_id 6BAY _atom_sites.fract_transf_matrix[1][1] 0.011872 _atom_sites.fract_transf_matrix[1][2] 0.006854 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002092 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 BLR A 1 601 516 BLR BLA . E 2 BLR B 1 601 516 BLR BLA . F 2 BLR C 1 601 516 BLR BLA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLR . . . E 2 6.512 -22.767 -21.482 1 102.2 ? CHA BLR 601 B 1 HETATM 2 N NA BLR . . . E 2 6.738 -21.997 -19.078 1 97.29 ? NA BLR 601 B 1 HETATM 3 C C1A BLR . . . E 2 6.233 -21.826 -20.319 1 98.5 ? C1A BLR 601 B 1 HETATM 4 C C2A BLR . . . E 2 5.435 -20.69 -20.335 1 96.91 ? C2A BLR 601 B 1 HETATM 5 C C3A BLR . . . E 2 5.466 -20.16 -19.107 1 95.32 ? C3A BLR 601 B 1 HETATM 6 C C4A BLR . . . E 2 6.284 -20.967 -18.307 1 99.57 ? C4A BLR 601 B 1 HETATM 7 C CMA BLR . . . E 2 4.71 -18.877 -18.795 1 86.89 ? CMA BLR 601 B 1 HETATM 8 C CAA BLR . . . E 2 4.644 -20.049 -21.483 1 90.32 ? CAA BLR 601 B 1 HETATM 9 C CBA BLR . . . E 2 3.372 -20.827 -21.788 1 90.91 ? CBA BLR 601 B 1 HETATM 10 C CGA BLR . . . E 2 2.151 -20.2 -21.114 1 93.85 ? CGA BLR 601 B 1 HETATM 11 O O1A BLR . . . E 2 2.161 -18.98 -20.79 1 90.66 ? O1A BLR 601 B 1 HETATM 12 O O2A BLR . . . E 2 1.131 -20.919 -20.889 1 92.74 ? O2A BLR 601 B 1 HETATM 13 C CHB BLR . . . E 2 6.689 -20.835 -16.827 1 94.19 ? CHB BLR 601 B 1 HETATM 14 N NB BLR . . . E 2 4.531 -19.777 -16.039 1 82.28 ? NB BLR 601 B 1 HETATM 15 C C1B BLR . . . E 2 6.009 -20.143 -15.965 1 90.06 ? C1B BLR 601 B 1 HETATM 16 C C2B BLR . . . E 2 6.555 -19.575 -14.715 1 88.22 ? C2B BLR 601 B 1 HETATM 17 C C3B BLR . . . E 2 5.547 -18.883 -14.016 1 92.31 ? C3B BLR 601 B 1 HETATM 18 C C4B BLR . . . E 2 4.267 -18.957 -14.785 1 86.01 ? C4B BLR 601 B 1 HETATM 19 C CMB BLR . . . E 2 7.984 -19.731 -14.239 1 85.41 ? CMB BLR 601 B 1 HETATM 20 O OB BLR . . . E 2 3.238 -18.468 -14.501 1 92.71 ? OB BLR 601 B 1 HETATM 21 C CAB BLR . . . E 2 5.789 -18.168 -12.671 1 94.27 ? CAB BLR 601 B 1 HETATM 22 C CBB BLR . . . E 2 5.042 -17.171 -12.229 1 86.6 ? CBB BLR 601 B 1 HETATM 23 N NC BLR . . . E 2 8.418 -26.861 -17.866 1 99.81 ? NC BLR 601 B 1 HETATM 24 C C1C BLR . . . E 2 8.921 -27.616 -16.618 1 100.16 ? C1C BLR 601 B 1 HETATM 25 C C2C BLR . . . E 2 10.007 -28.495 -17.071 1 101.42 ? C2C BLR 601 B 1 HETATM 26 C C3C BLR . . . E 2 10.219 -28.362 -18.469 1 101.61 ? C3C BLR 601 B 1 HETATM 27 C C4C BLR . . . E 2 9.269 -27.364 -19.037 1 94.76 ? C4C BLR 601 B 1 HETATM 28 C CMC BLR . . . E 2 10.741 -29.376 -16.076 0.11 104.24 ? CMC BLR 601 B 1 HETATM 29 O OC BLR . . . E 2 8.575 -27.557 -15.495 1 100.37 ? OC BLR 601 B 1 HETATM 30 C CAC BLR . . . E 2 11.271 -29.082 -19.324 1 111.41 ? CAC BLR 601 B 1 HETATM 31 C CBC BLR . . . E 2 11.825 -30.25 -19.047 1 112 ? CBC BLR 601 B 1 HETATM 32 C CHD BLR . . . E 2 9.23 -27.039 -20.3 1 95.9 ? CHD BLR 601 B 1 HETATM 33 N ND BLR . . . E 2 7.83 -24.691 -20.311 1 100.48 ? ND BLR 601 B 1 HETATM 34 C C1D BLR . . . E 2 8.457 -25.892 -20.943 1 99.97 ? C1D BLR 601 B 1 HETATM 35 C C2D BLR . . . E 2 8.232 -25.871 -22.414 1 94.09 ? C2D BLR 601 B 1 HETATM 36 C C3D BLR . . . E 2 7.458 -24.663 -22.739 1 92.39 ? C3D BLR 601 B 1 HETATM 37 C C4D BLR . . . E 2 7.202 -23.899 -21.451 1 101.13 ? C4D BLR 601 B 1 HETATM 38 C CMD BLR . . . E 2 8.724 -26.968 -23.368 1 98.21 ? CMD BLR 601 B 1 HETATM 39 C CAD BLR . . . E 2 6.962 -24.139 -24.096 1 90.99 ? CAD BLR 601 B 1 HETATM 40 C CBD BLR . . . E 2 5.482 -24.434 -24.354 1 88.84 ? CBD BLR 601 B 1 HETATM 41 C CGD BLR . . . E 2 5.059 -24.018 -25.779 1 94.35 ? CGD BLR 601 B 1 HETATM 42 O O1D BLR . . . E 2 5.285 -22.834 -26.131 1 89.35 ? O1D BLR 601 B 1 HETATM 43 O O2D BLR . . . E 2 4.485 -24.821 -26.595 1 90.13 ? O2D BLR 601 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #