data_6BAY # _model_server_result.job_id YcrGYgkXRrnAuGN4fai3LA _model_server_result.datetime_utc '2025-07-10 08:36:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bay # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 6BAY # _exptl.entry_id 6BAY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 584.662 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BAY _cell.length_a 84.23 _cell.length_b 84.23 _cell.length_c 477.99 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BAY _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E 1 1 C,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -159.33 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 18 A CYS 18 1_555 D CBC BLR . A BLR 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.672 ? covale ? covale2 B SG CYS 18 B CYS 18 1_555 E CBC BLR . B BLR 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.678 ? covale ? covale3 C SG CYS 18 C CYS 18 1_555 F CBC BLR . C BLR 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.59 ? # _chem_comp.formula 'C33 H36 N4 O6' _chem_comp.formula_weight 584.662 _chem_comp.id BLR _chem_comp.mon_nstd_flag . _chem_comp.name '3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Bilirubin IX alpha' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CMB C2B BLR sing 70 n n CAB CBB BLR doub 71 n n CAB C3B BLR sing 72 n n C2B C3B BLR doub 73 n n C2B C1B BLR sing 74 n n C3B C4B BLR sing 75 n n CMA C3A BLR sing 76 n n CHB C1B BLR doub 77 z n CHB C4A BLR sing 78 n n C1B NB BLR sing 79 n n C4B NB BLR sing 80 n n C4B OB BLR doub 81 n n C3A C4A BLR doub 82 n y C3A C2A BLR sing 83 n y C4A NA BLR sing 84 n y C2A CAA BLR sing 85 n n C2A C1A BLR doub 86 n y CAA CBA BLR sing 87 n n O2A CGA BLR doub 88 n n NA C1A BLR sing 89 n y CBA CGA BLR sing 90 n n CGA O1A BLR sing 91 n n C1A CHA BLR sing 92 n n CHA C4D BLR sing 93 n n O2D CGD BLR doub 94 n n CAD C3D BLR sing 95 n n CAD CBD BLR sing 96 n n C4D C3D BLR doub 97 n y C4D ND BLR sing 98 n y C3D C2D BLR sing 99 n y CGD CBD BLR sing 100 n n CGD O1D BLR sing 101 n n ND C1D BLR sing 102 n y C2D CMD BLR sing 103 n n C2D C1D BLR doub 104 n y C1D CHD BLR sing 105 n n CHD C4C BLR doub 106 z n C4C NC BLR sing 107 n n C4C C3C BLR sing 108 n n NC C1C BLR sing 109 n n CAC C3C BLR sing 110 n n CAC CBC BLR doub 111 n n C3C C2C BLR doub 112 n n C1C C2C BLR sing 113 n n C1C OC BLR doub 114 n n C2C CMC BLR sing 115 n n CHA H1 BLR sing 116 n n CHA H2 BLR sing 117 n n NA H3 BLR sing 118 n n CMA H4 BLR sing 119 n n CMA H5 BLR sing 120 n n CMA H6 BLR sing 121 n n CAA H7 BLR sing 122 n n CAA H8 BLR sing 123 n n CBA H9 BLR sing 124 n n CBA H10 BLR sing 125 n n O1A H11 BLR sing 126 n n CHB H12 BLR sing 127 n n NB H13 BLR sing 128 n n CMB H14 BLR sing 129 n n CMB H15 BLR sing 130 n n CMB H16 BLR sing 131 n n CAB H17 BLR sing 132 n n CBB H18 BLR sing 133 n n CBB H19 BLR sing 134 n n NC H20 BLR sing 135 n n CMC H21 BLR sing 136 n n CMC H22 BLR sing 137 n n CMC H23 BLR sing 138 n n CAC H24 BLR sing 139 n n CBC H25 BLR sing 140 n n CBC H26 BLR sing 141 n n CHD H27 BLR sing 142 n n ND H28 BLR sing 143 n n CMD H29 BLR sing 144 n n CMD H30 BLR sing 145 n n CMD H31 BLR sing 146 n n CAD H32 BLR sing 147 n n CAD H33 BLR sing 148 n n CBD H34 BLR sing 149 n n CBD H35 BLR sing 150 n n O1D H36 BLR sing 151 n n # _atom_sites.entry_id 6BAY _atom_sites.fract_transf_matrix[1][1] 0.011872 _atom_sites.fract_transf_matrix[1][2] 0.006854 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002092 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 BLR A 1 601 516 BLR BLA . E 2 BLR B 1 601 516 BLR BLA . F 2 BLR C 1 601 516 BLR BLA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLR . . . F 2 29.039 3.513 -80.856 1 148.18 ? CHA BLR 601 C 1 HETATM 2 N NA BLR . . . F 2 29.332 2.569 -83.244 1 138.59 ? NA BLR 601 C 1 HETATM 3 C C1A BLR . . . F 2 28.563 2.912 -82.187 1 142.78 ? C1A BLR 601 C 1 HETATM 4 C C2A BLR . . . F 2 27.259 2.644 -82.5 1 135.91 ? C2A BLR 601 C 1 HETATM 5 C C3A BLR . . . F 2 27.196 2.138 -83.723 1 136.71 ? C3A BLR 601 C 1 HETATM 6 C C4A BLR . . . F 2 28.496 2.106 -84.198 1 143.21 ? C4A BLR 601 C 1 HETATM 7 C CMA BLR . . . F 2 25.88 1.719 -84.383 1 133.99 ? CMA BLR 601 C 1 HETATM 8 C CAA BLR . . . F 2 26.064 2.9 -81.608 1 137.81 ? CAA BLR 601 C 1 HETATM 9 C CBA BLR . . . F 2 25.832 4.406 -81.681 1 132.62 ? CBA BLR 601 C 1 HETATM 10 C CGA BLR . . . F 2 24.541 4.666 -82.437 1 133.72 ? CGA BLR 601 C 1 HETATM 11 O O1A BLR . . . F 2 23.905 3.712 -82.977 1 130.98 ? O1A BLR 601 C 1 HETATM 12 O O2A BLR . . . F 2 24.123 5.852 -82.497 1 133.45 ? O2A BLR 601 C 1 HETATM 13 C CHB BLR . . . F 2 29.018 1.607 -85.541 1 153.2 ? CHB BLR 601 C 1 HETATM 14 N NB BLR . . . F 2 27.092 2.338 -87.124 1 143.58 ? NB BLR 601 C 1 HETATM 15 C C1B BLR . . . F 2 28.278 1.48 -86.621 1 154.22 ? C1B BLR 601 C 1 HETATM 16 C C2B BLR . . . F 2 28.476 0.385 -87.612 1 152.92 ? C2B BLR 601 C 1 HETATM 17 C C3B BLR . . . F 2 27.529 0.491 -88.659 1 153.63 ? C3B BLR 601 C 1 HETATM 18 C C4B BLR . . . F 2 26.639 1.665 -88.429 1 148.58 ? C4B BLR 601 C 1 HETATM 19 C CMB BLR . . . F 2 29.554 -0.692 -87.492 1 152.21 ? CMB BLR 601 C 1 HETATM 20 O OB BLR . . . F 2 25.757 2.007 -89.133 1 150.65 ? OB BLR 601 C 1 HETATM 21 C CAB BLR . . . F 2 27.44 -0.453 -89.852 1 154.7 ? CAB BLR 601 C 1 HETATM 22 C CBB BLR . . . F 2 26.694 -0.184 -90.903 1 154.94 ? CBB BLR 601 C 1 HETATM 23 N NC BLR . . . F 2 33.753 3.137 -83.419 1 160.1 ? NC BLR 601 C 1 HETATM 24 C C1C BLR . . . F 2 34.762 3.01 -84.586 1 163.33 ? C1C BLR 601 C 1 HETATM 25 C C2C BLR . . . F 2 36.118 3.051 -83.96 1 161.41 ? C2C BLR 601 C 1 HETATM 26 C C3C BLR . . . F 2 36.02 3.186 -82.558 1 157.66 ? C3C BLR 601 C 1 HETATM 27 C C4C BLR . . . F 2 34.594 3.25 -82.125 1 158.56 ? C4C BLR 601 C 1 HETATM 28 C CMC BLR . . . F 2 37.432 2.943 -84.718 1 162.17 ? CMC BLR 601 C 1 HETATM 29 O OC BLR . . . F 2 34.536 2.9 -85.748 1 159.97 ? OC BLR 601 C 1 HETATM 30 C CAC BLR . . . F 2 37.218 3.257 -81.629 1 156.04 ? CAC BLR 601 C 1 HETATM 31 C CBC BLR . . . F 2 38.024 2.229 -81.499 1 158.15 ? CBC BLR 601 C 1 HETATM 32 C CHD BLR . . . F 2 34.193 3.372 -80.88 1 151.64 ? CHD BLR 601 C 1 HETATM 33 N ND BLR . . . F 2 31.541 3.414 -81.358 1 150.77 ? ND BLR 601 C 1 HETATM 34 C C1D BLR . . . F 2 32.733 3.419 -80.469 1 145.27 ? C1D BLR 601 C 1 HETATM 35 C C2D BLR . . . F 2 32.289 3.5 -79.066 1 139.93 ? C2D BLR 601 C 1 HETATM 36 C C3D BLR . . . F 2 30.835 3.537 -79.048 1 137.76 ? C3D BLR 601 C 1 HETATM 37 C C4D BLR . . . F 2 30.308 3.493 -80.479 1 146.38 ? C4D BLR 601 C 1 HETATM 38 C CMD BLR . . . F 2 33.195 3.535 -77.849 1 147.07 ? CMD BLR 601 C 1 HETATM 39 C CAD BLR . . . F 2 30.007 3.63 -77.787 1 136.55 ? CAD BLR 601 C 1 HETATM 40 C CBD BLR . . . F 2 29.489 5.046 -77.7 1 133.44 ? CBD BLR 601 C 1 HETATM 41 C CGD BLR . . . F 2 28.243 5.058 -76.836 1 133.48 ? CGD BLR 601 C 1 HETATM 42 O O1D BLR . . . F 2 27.236 4.405 -77.213 1 137.15 ? O1D BLR 601 C 1 HETATM 43 O O2D BLR . . . F 2 28.236 5.725 -75.768 1 131.09 ? O2D BLR 601 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #