data_6BAY
#
_model_server_result.job_id            2Z_5h8MydzAPNpCFHJhl4A 
_model_server_result.datetime_utc      '2025-07-10 11:15:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bay 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    6BAY 
#
_exptl.entry_id    6BAY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              584.662 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6BAY 
_cell.length_a            84.23 
_cell.length_b            84.23 
_cell.length_c            477.99 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BAY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E 1 1 
C,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -159.33 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 18 A CYS 18 1_555 D CBC BLR . A BLR 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.672 ? 
covale ? covale2 B SG CYS 18 B CYS 18 1_555 E CBC BLR . B BLR 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.678 ? 
covale ? covale3 C SG CYS 18 C CYS 18 1_555 F CBC BLR . C BLR 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.59 ? 
#
_chem_comp.formula           'C33 H36 N4 O6' 
_chem_comp.formula_weight    584.662 
_chem_comp.id                BLR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Bilirubin IX alpha' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CMB C2B BLR sing 70 n n 
CAB CBB BLR doub 71 n n 
CAB C3B BLR sing 72 n n 
C2B C3B BLR doub 73 n n 
C2B C1B BLR sing 74 n n 
C3B C4B BLR sing 75 n n 
CMA C3A BLR sing 76 n n 
CHB C1B BLR doub 77 z n 
CHB C4A BLR sing 78 n n 
C1B NB BLR sing 79 n n 
C4B NB BLR sing 80 n n 
C4B OB BLR doub 81 n n 
C3A C4A BLR doub 82 n y 
C3A C2A BLR sing 83 n y 
C4A NA BLR sing 84 n y 
C2A CAA BLR sing 85 n n 
C2A C1A BLR doub 86 n y 
CAA CBA BLR sing 87 n n 
O2A CGA BLR doub 88 n n 
NA C1A BLR sing 89 n y 
CBA CGA BLR sing 90 n n 
CGA O1A BLR sing 91 n n 
C1A CHA BLR sing 92 n n 
CHA C4D BLR sing 93 n n 
O2D CGD BLR doub 94 n n 
CAD C3D BLR sing 95 n n 
CAD CBD BLR sing 96 n n 
C4D C3D BLR doub 97 n y 
C4D ND BLR sing 98 n y 
C3D C2D BLR sing 99 n y 
CGD CBD BLR sing 100 n n 
CGD O1D BLR sing 101 n n 
ND C1D BLR sing 102 n y 
C2D CMD BLR sing 103 n n 
C2D C1D BLR doub 104 n y 
C1D CHD BLR sing 105 n n 
CHD C4C BLR doub 106 z n 
C4C NC BLR sing 107 n n 
C4C C3C BLR sing 108 n n 
NC C1C BLR sing 109 n n 
CAC C3C BLR sing 110 n n 
CAC CBC BLR doub 111 n n 
C3C C2C BLR doub 112 n n 
C1C C2C BLR sing 113 n n 
C1C OC BLR doub 114 n n 
C2C CMC BLR sing 115 n n 
CHA H1 BLR sing 116 n n 
CHA H2 BLR sing 117 n n 
NA H3 BLR sing 118 n n 
CMA H4 BLR sing 119 n n 
CMA H5 BLR sing 120 n n 
CMA H6 BLR sing 121 n n 
CAA H7 BLR sing 122 n n 
CAA H8 BLR sing 123 n n 
CBA H9 BLR sing 124 n n 
CBA H10 BLR sing 125 n n 
O1A H11 BLR sing 126 n n 
CHB H12 BLR sing 127 n n 
NB H13 BLR sing 128 n n 
CMB H14 BLR sing 129 n n 
CMB H15 BLR sing 130 n n 
CMB H16 BLR sing 131 n n 
CAB H17 BLR sing 132 n n 
CBB H18 BLR sing 133 n n 
CBB H19 BLR sing 134 n n 
NC H20 BLR sing 135 n n 
CMC H21 BLR sing 136 n n 
CMC H22 BLR sing 137 n n 
CMC H23 BLR sing 138 n n 
CAC H24 BLR sing 139 n n 
CBC H25 BLR sing 140 n n 
CBC H26 BLR sing 141 n n 
CHD H27 BLR sing 142 n n 
ND H28 BLR sing 143 n n 
CMD H29 BLR sing 144 n n 
CMD H30 BLR sing 145 n n 
CMD H31 BLR sing 146 n n 
CAD H32 BLR sing 147 n n 
CAD H33 BLR sing 148 n n 
CBD H34 BLR sing 149 n n 
CBD H35 BLR sing 150 n n 
O1D H36 BLR sing 151 n n 
#
_atom_sites.entry_id                     6BAY 
_atom_sites.fract_transf_matrix[1][1]    0.011872 
_atom_sites.fract_transf_matrix[1][2]    0.006854 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013709 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002092 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 BLR A 1 601 516 BLR BLA . 
E 2 BLR B 1 601 516 BLR BLA . 
F 2 BLR C 1 601 516 BLR BLA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA BLR . . . F 2 29.039 3.513 -80.856 1 148.18 ? CHA BLR 601 C 1 
HETATM 2 N NA BLR . . . F 2 29.332 2.569 -83.244 1 138.59 ? NA BLR 601 C 1 
HETATM 3 C C1A BLR . . . F 2 28.563 2.912 -82.187 1 142.78 ? C1A BLR 601 C 1 
HETATM 4 C C2A BLR . . . F 2 27.259 2.644 -82.5 1 135.91 ? C2A BLR 601 C 1 
HETATM 5 C C3A BLR . . . F 2 27.196 2.138 -83.723 1 136.71 ? C3A BLR 601 C 1 
HETATM 6 C C4A BLR . . . F 2 28.496 2.106 -84.198 1 143.21 ? C4A BLR 601 C 1 
HETATM 7 C CMA BLR . . . F 2 25.88 1.719 -84.383 1 133.99 ? CMA BLR 601 C 1 
HETATM 8 C CAA BLR . . . F 2 26.064 2.9 -81.608 1 137.81 ? CAA BLR 601 C 1 
HETATM 9 C CBA BLR . . . F 2 25.832 4.406 -81.681 1 132.62 ? CBA BLR 601 C 1 
HETATM 10 C CGA BLR . . . F 2 24.541 4.666 -82.437 1 133.72 ? CGA BLR 601 C 1 
HETATM 11 O O1A BLR . . . F 2 23.905 3.712 -82.977 1 130.98 ? O1A BLR 601 C 1 
HETATM 12 O O2A BLR . . . F 2 24.123 5.852 -82.497 1 133.45 ? O2A BLR 601 C 1 
HETATM 13 C CHB BLR . . . F 2 29.018 1.607 -85.541 1 153.2 ? CHB BLR 601 C 1 
HETATM 14 N NB BLR . . . F 2 27.092 2.338 -87.124 1 143.58 ? NB BLR 601 C 1 
HETATM 15 C C1B BLR . . . F 2 28.278 1.48 -86.621 1 154.22 ? C1B BLR 601 C 1 
HETATM 16 C C2B BLR . . . F 2 28.476 0.385 -87.612 1 152.92 ? C2B BLR 601 C 1 
HETATM 17 C C3B BLR . . . F 2 27.529 0.491 -88.659 1 153.63 ? C3B BLR 601 C 1 
HETATM 18 C C4B BLR . . . F 2 26.639 1.665 -88.429 1 148.58 ? C4B BLR 601 C 1 
HETATM 19 C CMB BLR . . . F 2 29.554 -0.692 -87.492 1 152.21 ? CMB BLR 601 C 1 
HETATM 20 O OB BLR . . . F 2 25.757 2.007 -89.133 1 150.65 ? OB BLR 601 C 1 
HETATM 21 C CAB BLR . . . F 2 27.44 -0.453 -89.852 1 154.7 ? CAB BLR 601 C 1 
HETATM 22 C CBB BLR . . . F 2 26.694 -0.184 -90.903 1 154.94 ? CBB BLR 601 C 1 
HETATM 23 N NC BLR . . . F 2 33.753 3.137 -83.419 1 160.1 ? NC BLR 601 C 1 
HETATM 24 C C1C BLR . . . F 2 34.762 3.01 -84.586 1 163.33 ? C1C BLR 601 C 1 
HETATM 25 C C2C BLR . . . F 2 36.118 3.051 -83.96 1 161.41 ? C2C BLR 601 C 1 
HETATM 26 C C3C BLR . . . F 2 36.02 3.186 -82.558 1 157.66 ? C3C BLR 601 C 1 
HETATM 27 C C4C BLR . . . F 2 34.594 3.25 -82.125 1 158.56 ? C4C BLR 601 C 1 
HETATM 28 C CMC BLR . . . F 2 37.432 2.943 -84.718 1 162.17 ? CMC BLR 601 C 1 
HETATM 29 O OC BLR . . . F 2 34.536 2.9 -85.748 1 159.97 ? OC BLR 601 C 1 
HETATM 30 C CAC BLR . . . F 2 37.218 3.257 -81.629 1 156.04 ? CAC BLR 601 C 1 
HETATM 31 C CBC BLR . . . F 2 38.024 2.229 -81.499 1 158.15 ? CBC BLR 601 C 1 
HETATM 32 C CHD BLR . . . F 2 34.193 3.372 -80.88 1 151.64 ? CHD BLR 601 C 1 
HETATM 33 N ND BLR . . . F 2 31.541 3.414 -81.358 1 150.77 ? ND BLR 601 C 1 
HETATM 34 C C1D BLR . . . F 2 32.733 3.419 -80.469 1 145.27 ? C1D BLR 601 C 1 
HETATM 35 C C2D BLR . . . F 2 32.289 3.5 -79.066 1 139.93 ? C2D BLR 601 C 1 
HETATM 36 C C3D BLR . . . F 2 30.835 3.537 -79.048 1 137.76 ? C3D BLR 601 C 1 
HETATM 37 C C4D BLR . . . F 2 30.308 3.493 -80.479 1 146.38 ? C4D BLR 601 C 1 
HETATM 38 C CMD BLR . . . F 2 33.195 3.535 -77.849 1 147.07 ? CMD BLR 601 C 1 
HETATM 39 C CAD BLR . . . F 2 30.007 3.63 -77.787 1 136.55 ? CAD BLR 601 C 1 
HETATM 40 C CBD BLR . . . F 2 29.489 5.046 -77.7 1 133.44 ? CBD BLR 601 C 1 
HETATM 41 C CGD BLR . . . F 2 28.243 5.058 -76.836 1 133.48 ? CGD BLR 601 C 1 
HETATM 42 O O1D BLR . . . F 2 27.236 4.405 -77.213 1 137.15 ? O1D BLR 601 C 1 
HETATM 43 O O2D BLR . . . F 2 28.236 5.725 -75.768 1 131.09 ? O2D BLR 601 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#