data_6BB3 # _model_server_result.job_id yh3nDN1P1G97bAQx-kECoA _model_server_result.datetime_utc '2025-01-10 11:07:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bb3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 6BB3 # _exptl.entry_id 6BB3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.77 _cell.angle_gamma 90 _cell.entry_id 6BB3 _cell.length_a 74.7 _cell.length_b 80.798 _cell.length_c 103.047 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BB3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 I N N ? 2 M N N ? 2 Q N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 294 n n PA O2A NAD sing 295 n n PA O5B NAD sing 296 n n PA O3 NAD sing 297 n n O2A HOA2 NAD sing 298 n n O5B C5B NAD sing 299 n n C5B C4B NAD sing 300 n n C5B H51A NAD sing 301 n n C5B H52A NAD sing 302 n n C4B O4B NAD sing 303 n n C4B C3B NAD sing 304 n n C4B H4B NAD sing 305 n n O4B C1B NAD sing 306 n n C3B O3B NAD sing 307 n n C3B C2B NAD sing 308 n n C3B H3B NAD sing 309 n n O3B HO3A NAD sing 310 n n C2B O2B NAD sing 311 n n C2B C1B NAD sing 312 n n C2B H2B NAD sing 313 n n O2B HO2A NAD sing 314 n n C1B N9A NAD sing 315 n n C1B H1B NAD sing 316 n n N9A C8A NAD sing 317 n y N9A C4A NAD sing 318 n y C8A N7A NAD doub 319 n y C8A H8A NAD sing 320 n n N7A C5A NAD sing 321 n y C5A C6A NAD sing 322 n y C5A C4A NAD doub 323 n y C6A N6A NAD sing 324 n n C6A N1A NAD doub 325 n y N6A H61A NAD sing 326 n n N6A H62A NAD sing 327 n n N1A C2A NAD sing 328 n y C2A N3A NAD doub 329 n y C2A H2A NAD sing 330 n n N3A C4A NAD sing 331 n y O3 PN NAD sing 332 n n PN O1N NAD doub 333 n n PN O2N NAD sing 334 n n PN O5D NAD sing 335 n n O5D C5D NAD sing 336 n n C5D C4D NAD sing 337 n n C5D H51N NAD sing 338 n n C5D H52N NAD sing 339 n n C4D O4D NAD sing 340 n n C4D C3D NAD sing 341 n n C4D H4D NAD sing 342 n n O4D C1D NAD sing 343 n n C3D O3D NAD sing 344 n n C3D C2D NAD sing 345 n n C3D H3D NAD sing 346 n n O3D HO3N NAD sing 347 n n C2D O2D NAD sing 348 n n C2D C1D NAD sing 349 n n C2D H2D NAD sing 350 n n O2D HO2N NAD sing 351 n n C1D N1N NAD sing 352 n n C1D H1D NAD sing 353 n n N1N C2N NAD sing 354 n y N1N C6N NAD doub 355 n y C2N C3N NAD doub 356 n y C2N H2N NAD sing 357 n n C3N C7N NAD sing 358 n n C3N C4N NAD sing 359 n y C7N O7N NAD doub 360 n n C7N N7N NAD sing 361 n n N7N H71N NAD sing 362 n n N7N H72N NAD sing 363 n n C4N C5N NAD doub 364 n y C4N H4N NAD sing 365 n n C5N C6N NAD sing 366 n y C5N H5N NAD sing 367 n n C6N H6N NAD sing 368 n n # _atom_sites.entry_id 6BB3 _atom_sites.fract_transf_matrix[1][1] 0.013387 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001589 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012377 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 401 800 NAD NAI . F 3 SO4 A 1 402 4 SO4 SO4 . G 3 SO4 A 1 403 7 SO4 SO4 . H 4 D4A A 1 404 1 D4A DRG . I 2 NAD B 1 401 800 NAD NAI . J 3 SO4 B 1 402 1 SO4 SO4 . K 3 SO4 B 1 403 5 SO4 SO4 . L 4 D4A B 1 404 1 D4A DRG . M 2 NAD C 1 401 800 NAD NAI . N 3 SO4 C 1 402 3 SO4 SO4 . O 3 SO4 C 1 403 6 SO4 SO4 . P 4 D4A C 1 404 1 D4A DRG . Q 2 NAD D 1 401 800 NAD NAI . R 3 SO4 D 1 402 2 SO4 SO4 . S 4 D4A D 1 403 1 D4A DRG . T 5 HOH A 1 501 18 HOH HOH . T 5 HOH A 2 502 85 HOH HOH . T 5 HOH A 3 503 29 HOH HOH . T 5 HOH A 4 504 92 HOH HOH . T 5 HOH A 5 505 36 HOH HOH . T 5 HOH A 6 506 127 HOH HOH . T 5 HOH A 7 507 111 HOH HOH . T 5 HOH A 8 508 70 HOH HOH . T 5 HOH A 9 509 87 HOH HOH . T 5 HOH A 10 510 23 HOH HOH . T 5 HOH A 11 511 78 HOH HOH . T 5 HOH A 12 512 142 HOH HOH . T 5 HOH A 13 513 37 HOH HOH . T 5 HOH A 14 514 86 HOH HOH . T 5 HOH A 15 515 21 HOH HOH . T 5 HOH A 16 516 75 HOH HOH . T 5 HOH A 17 517 69 HOH HOH . T 5 HOH A 18 518 103 HOH HOH . T 5 HOH A 19 519 76 HOH HOH . T 5 HOH A 20 520 72 HOH HOH . T 5 HOH A 21 521 88 HOH HOH . T 5 HOH A 22 522 27 HOH HOH . T 5 HOH A 23 523 46 HOH HOH . T 5 HOH A 24 524 53 HOH HOH . T 5 HOH A 25 525 106 HOH HOH . T 5 HOH A 26 526 57 HOH HOH . T 5 HOH A 27 527 94 HOH HOH . T 5 HOH A 28 528 60 HOH HOH . T 5 HOH A 29 529 38 HOH HOH . T 5 HOH A 30 530 126 HOH HOH . U 5 HOH B 1 501 19 HOH HOH . U 5 HOH B 2 502 15 HOH HOH . U 5 HOH B 3 503 54 HOH HOH . U 5 HOH B 4 504 6 HOH HOH . U 5 HOH B 5 505 143 HOH HOH . U 5 HOH B 6 506 98 HOH HOH . U 5 HOH B 7 507 11 HOH HOH . U 5 HOH B 8 508 3 HOH HOH . U 5 HOH B 9 509 40 HOH HOH . U 5 HOH B 10 510 55 HOH HOH . U 5 HOH B 11 511 89 HOH HOH . U 5 HOH B 12 512 43 HOH HOH . U 5 HOH B 13 513 118 HOH HOH . U 5 HOH B 14 514 17 HOH HOH . U 5 HOH B 15 515 102 HOH HOH . U 5 HOH B 16 516 81 HOH HOH . U 5 HOH B 17 517 14 HOH HOH . U 5 HOH B 18 518 31 HOH HOH . U 5 HOH B 19 519 71 HOH HOH . U 5 HOH B 20 520 48 HOH HOH . U 5 HOH B 21 521 13 HOH HOH . U 5 HOH B 22 522 2 HOH HOH . U 5 HOH B 23 523 115 HOH HOH . U 5 HOH B 24 524 80 HOH HOH . U 5 HOH B 25 525 117 HOH HOH . U 5 HOH B 26 526 51 HOH HOH . U 5 HOH B 27 527 113 HOH HOH . U 5 HOH B 28 528 34 HOH HOH . U 5 HOH B 29 529 120 HOH HOH . U 5 HOH B 30 530 141 HOH HOH . U 5 HOH B 31 531 30 HOH HOH . U 5 HOH B 32 532 101 HOH HOH . U 5 HOH B 33 533 107 HOH HOH . U 5 HOH B 34 534 136 HOH HOH . V 5 HOH C 1 501 35 HOH HOH . V 5 HOH C 2 502 64 HOH HOH . V 5 HOH C 3 503 28 HOH HOH . V 5 HOH C 4 504 122 HOH HOH . V 5 HOH C 5 505 59 HOH HOH . V 5 HOH C 6 506 82 HOH HOH . V 5 HOH C 7 507 128 HOH HOH . V 5 HOH C 8 508 68 HOH HOH . V 5 HOH C 9 509 9 HOH HOH . V 5 HOH C 10 510 119 HOH HOH . V 5 HOH C 11 511 16 HOH HOH . V 5 HOH C 12 512 25 HOH HOH . V 5 HOH C 13 513 33 HOH HOH . V 5 HOH C 14 514 50 HOH HOH . V 5 HOH C 15 515 138 HOH HOH . V 5 HOH C 16 516 45 HOH HOH . V 5 HOH C 17 517 84 HOH HOH . V 5 HOH C 18 518 133 HOH HOH . V 5 HOH C 19 519 116 HOH HOH . V 5 HOH C 20 520 140 HOH HOH . V 5 HOH C 21 521 91 HOH HOH . V 5 HOH C 22 522 105 HOH HOH . V 5 HOH C 23 523 44 HOH HOH . V 5 HOH C 24 524 134 HOH HOH . V 5 HOH C 25 525 137 HOH HOH . V 5 HOH C 26 526 125 HOH HOH . V 5 HOH C 27 527 66 HOH HOH . V 5 HOH C 28 528 132 HOH HOH . W 5 HOH D 1 501 7 HOH HOH . W 5 HOH D 2 502 12 HOH HOH . W 5 HOH D 3 503 39 HOH HOH . W 5 HOH D 4 504 52 HOH HOH . W 5 HOH D 5 505 26 HOH HOH . W 5 HOH D 6 506 77 HOH HOH . W 5 HOH D 7 507 62 HOH HOH . W 5 HOH D 8 508 67 HOH HOH . W 5 HOH D 9 509 41 HOH HOH . W 5 HOH D 10 510 65 HOH HOH . W 5 HOH D 11 511 20 HOH HOH . W 5 HOH D 12 512 58 HOH HOH . W 5 HOH D 13 513 90 HOH HOH . W 5 HOH D 14 514 100 HOH HOH . W 5 HOH D 15 515 42 HOH HOH . W 5 HOH D 16 516 63 HOH HOH . W 5 HOH D 17 517 5 HOH HOH . W 5 HOH D 18 518 4 HOH HOH . W 5 HOH D 19 519 99 HOH HOH . W 5 HOH D 20 520 22 HOH HOH . W 5 HOH D 21 521 47 HOH HOH . W 5 HOH D 22 522 1 HOH HOH . W 5 HOH D 23 523 83 HOH HOH . W 5 HOH D 24 524 95 HOH HOH . W 5 HOH D 25 525 79 HOH HOH . W 5 HOH D 26 526 73 HOH HOH . W 5 HOH D 27 527 93 HOH HOH . W 5 HOH D 28 528 124 HOH HOH . W 5 HOH D 29 529 10 HOH HOH . W 5 HOH D 30 530 130 HOH HOH . W 5 HOH D 31 531 110 HOH HOH . W 5 HOH D 32 532 56 HOH HOH . W 5 HOH D 33 533 97 HOH HOH . W 5 HOH D 34 534 112 HOH HOH . W 5 HOH D 35 535 32 HOH HOH . W 5 HOH D 36 536 104 HOH HOH . W 5 HOH D 37 537 24 HOH HOH . W 5 HOH D 38 538 108 HOH HOH . W 5 HOH D 39 539 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 41.328 10.333 16.174 1 32.82 ? PA NAD 401 A 1 HETATM 2 O O1A NAD . . . E 2 41.338 8.889 16.632 1 32.38 ? O1A NAD 401 A 1 HETATM 3 O O2A NAD . . . E 2 42.524 11.076 15.617 1 38.37 ? O2A NAD 401 A 1 HETATM 4 O O5B NAD . . . E 2 40.064 10.487 15.162 1 35.59 ? O5B NAD 401 A 1 HETATM 5 C C5B NAD . . . E 2 39.912 11.7 14.436 1 35.07 ? C5B NAD 401 A 1 HETATM 6 C C4B NAD . . . E 2 39.261 11.351 13.117 1 34.55 ? C4B NAD 401 A 1 HETATM 7 O O4B NAD . . . E 2 38.863 12.547 12.437 1 35.23 ? O4B NAD 401 A 1 HETATM 8 C C3B NAD . . . E 2 40.222 10.589 12.228 1 32.78 ? C3B NAD 401 A 1 HETATM 9 O O3B NAD . . . E 2 39.545 9.406 11.816 1 33.11 ? O3B NAD 401 A 1 HETATM 10 C C2B NAD . . . E 2 40.435 11.535 11.079 1 36.03 ? C2B NAD 401 A 1 HETATM 11 O O2B NAD . . . E 2 40.604 10.892 9.824 1 39.23 ? O2B NAD 401 A 1 HETATM 12 C C1B NAD . . . E 2 39.153 12.323 11.073 1 34.37 ? C1B NAD 401 A 1 HETATM 13 N N9A NAD . . . E 2 39.264 13.556 10.318 1 34.37 ? N9A NAD 401 A 1 HETATM 14 C C8A NAD . . . E 2 40.349 14.384 10.225 1 31.73 ? C8A NAD 401 A 1 HETATM 15 N N7A NAD . . . E 2 40.112 15.37 9.385 1 35.22 ? N7A NAD 401 A 1 HETATM 16 C C5A NAD . . . E 2 38.841 15.159 8.915 1 36.67 ? C5A NAD 401 A 1 HETATM 17 C C6A NAD . . . E 2 38.058 15.863 8.013 1 38.64 ? C6A NAD 401 A 1 HETATM 18 N N6A NAD . . . E 2 38.528 17.02 7.388 1 38 ? N6A NAD 401 A 1 HETATM 19 N N1A NAD . . . E 2 36.82 15.407 7.764 1 39.44 ? N1A NAD 401 A 1 HETATM 20 C C2A NAD . . . E 2 36.411 14.295 8.391 1 39.19 ? C2A NAD 401 A 1 HETATM 21 N N3A NAD . . . E 2 37.075 13.536 9.268 1 39.19 ? N3A NAD 401 A 1 HETATM 22 C C4A NAD . . . E 2 38.297 14.03 9.483 1 36.97 ? C4A NAD 401 A 1 HETATM 23 O O3 NAD . . . E 2 40.785 11.236 17.395 1 29.06 ? O3 NAD 401 A 1 HETATM 24 P PN NAD . . . E 2 39.754 10.786 18.547 1 28.55 ? PN NAD 401 A 1 HETATM 25 O O1N NAD . . . E 2 38.608 10.051 17.887 1 33.58 ? O1N NAD 401 A 1 HETATM 26 O O2N NAD . . . E 2 40.526 10.122 19.65 1 28.05 ? O2N NAD 401 A 1 HETATM 27 O O5D NAD . . . E 2 39.283 12.25 19.088 1 30.87 ? O5D NAD 401 A 1 HETATM 28 C C5D NAD . . . E 2 38.495 13.11 18.276 1 32.1 ? C5D NAD 401 A 1 HETATM 29 C C4D NAD . . . E 2 38.325 14.453 18.968 1 33.08 ? C4D NAD 401 A 1 HETATM 30 O O4D NAD . . . E 2 37.416 14.356 20.077 1 32.54 ? O4D NAD 401 A 1 HETATM 31 C C3D NAD . . . E 2 39.631 15.025 19.477 1 34.01 ? C3D NAD 401 A 1 HETATM 32 O O3D NAD . . . E 2 39.631 16.389 19.072 1 35.59 ? O3D NAD 401 A 1 HETATM 33 C C2D NAD . . . E 2 39.491 14.918 20.981 1 34.23 ? C2D NAD 401 A 1 HETATM 34 O O2D NAD . . . E 2 40.201 15.94 21.649 1 32.84 ? O2D NAD 401 A 1 HETATM 35 C C1D NAD . . . E 2 37.994 15.071 21.163 1 33.26 ? C1D NAD 401 A 1 HETATM 36 N N1N NAD . . . E 2 37.486 14.606 22.447 1 34.48 ? N1N NAD 401 A 1 HETATM 37 C C2N NAD . . . E 2 36.588 15.396 23.04 1 36.02 ? C2N NAD 401 A 1 HETATM 38 C C3N NAD . . . E 2 36.037 15.05 24.26 1 34.53 ? C3N NAD 401 A 1 HETATM 39 C C7N NAD . . . E 2 35.046 15.931 24.908 1 35.77 ? C7N NAD 401 A 1 HETATM 40 O O7N NAD . . . E 2 34.757 15.778 26.083 1 36.91 ? O7N NAD 401 A 1 HETATM 41 N N7N NAD . . . E 2 34.48 16.883 24.096 1 37.33 ? N7N NAD 401 A 1 HETATM 42 C C4N NAD . . . E 2 36.422 13.874 24.874 1 33.47 ? C4N NAD 401 A 1 HETATM 43 C C5N NAD . . . E 2 37.347 13.074 24.229 1 36.11 ? C5N NAD 401 A 1 HETATM 44 C C6N NAD . . . E 2 37.869 13.452 23.003 1 34.73 ? C6N NAD 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 429 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #