data_6BB3 # _model_server_result.job_id 4rqAl6NWdyN9HFfNtCsblw _model_server_result.datetime_utc '2025-01-10 11:29:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bb3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":403}' # _entry.id 6BB3 # _exptl.entry_id 6BB3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 525.014 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6R)-3-[(2-chlorophenyl)sulfanyl]-6-{6-[(4-fluorophenyl)amino]pyridin-2-yl}-4-hydroxy-6-(thiophen-3-yl)-5,6-dihydro-2H-pyran-2-one _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.77 _cell.angle_gamma 90 _cell.entry_id 6BB3 _cell.length_a 74.7 _cell.length_b 80.798 _cell.length_c 103.047 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BB3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 L N N ? 4 P N N ? 4 S N N # _chem_comp.formula 'C26 H18 Cl F N2 O3 S2' _chem_comp.formula_weight 525.014 _chem_comp.id D4A _chem_comp.mon_nstd_flag . _chem_comp.name (6R)-3-[(2-chlorophenyl)sulfanyl]-6-{6-[(4-fluorophenyl)amino]pyridin-2-yl}-4-hydroxy-6-(thiophen-3-yl)-5,6-dihydro-2H-pyran-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F32 C17 D4A sing 83 n n C17 C7 D4A doub 84 n y C17 C6 D4A sing 85 n y C7 C5 D4A sing 86 n y C6 C4 D4A doub 87 n y C5 C16 D4A doub 88 n y C4 C16 D4A sing 89 n y C16 N28 D4A sing 90 n n C9 C2 D4A doub 91 n y C9 C19 D4A sing 92 n y C2 C1 D4A sing 93 n y CL35 C19 D4A sing 94 n n O31 C23 D4A sing 95 n n C19 C18 D4A doub 96 n y C1 C8 D4A doub 97 n y N28 C21 D4A sing 98 n n C18 C8 D4A sing 99 n y C18 S34 D4A sing 100 n n S34 C22 D4A sing 101 n n C23 C22 D4A doub 102 n n C23 C25 D4A sing 103 n n C21 N27 D4A doub 104 n y C21 C11 D4A sing 105 n y C22 C24 D4A sing 106 n n N27 C20 D4A sing 107 n y C25 C26 D4A sing 108 n n C11 C3 D4A doub 109 n y C20 C26 D4A sing 110 n n C20 C10 D4A doub 111 n y C24 O29 D4A doub 112 n n C24 O30 D4A sing 113 n n C26 O30 D4A sing 114 n n C26 C15 D4A sing 115 n n C3 C10 D4A sing 116 n y C15 C14 D4A doub 117 n y C15 C12 D4A sing 118 n y C14 S33 D4A sing 119 n y C12 C13 D4A doub 120 n y S33 C13 D4A sing 121 n y C4 H1 D4A sing 122 n n C14 H2 D4A sing 123 n n C5 H3 D4A sing 124 n n C6 H4 D4A sing 125 n n C11 H5 D4A sing 126 n n C7 H6 D4A sing 127 n n C8 H7 D4A sing 128 n n C9 H8 D4A sing 129 n n C10 H9 D4A sing 130 n n C12 H10 D4A sing 131 n n C13 H11 D4A sing 132 n n C3 H12 D4A sing 133 n n C1 H13 D4A sing 134 n n C2 H14 D4A sing 135 n n C25 H15 D4A sing 136 n n C25 H16 D4A sing 137 n n N28 H17 D4A sing 138 n n O31 H18 D4A sing 139 n n # _atom_sites.entry_id 6BB3 _atom_sites.fract_transf_matrix[1][1] 0.013387 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001589 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012377 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 401 800 NAD NAI . F 3 SO4 A 1 402 4 SO4 SO4 . G 3 SO4 A 1 403 7 SO4 SO4 . H 4 D4A A 1 404 1 D4A DRG . I 2 NAD B 1 401 800 NAD NAI . J 3 SO4 B 1 402 1 SO4 SO4 . K 3 SO4 B 1 403 5 SO4 SO4 . L 4 D4A B 1 404 1 D4A DRG . M 2 NAD C 1 401 800 NAD NAI . N 3 SO4 C 1 402 3 SO4 SO4 . O 3 SO4 C 1 403 6 SO4 SO4 . P 4 D4A C 1 404 1 D4A DRG . Q 2 NAD D 1 401 800 NAD NAI . R 3 SO4 D 1 402 2 SO4 SO4 . S 4 D4A D 1 403 1 D4A DRG . T 5 HOH A 1 501 18 HOH HOH . T 5 HOH A 2 502 85 HOH HOH . T 5 HOH A 3 503 29 HOH HOH . T 5 HOH A 4 504 92 HOH HOH . T 5 HOH A 5 505 36 HOH HOH . T 5 HOH A 6 506 127 HOH HOH . T 5 HOH A 7 507 111 HOH HOH . T 5 HOH A 8 508 70 HOH HOH . T 5 HOH A 9 509 87 HOH HOH . T 5 HOH A 10 510 23 HOH HOH . T 5 HOH A 11 511 78 HOH HOH . T 5 HOH A 12 512 142 HOH HOH . T 5 HOH A 13 513 37 HOH HOH . T 5 HOH A 14 514 86 HOH HOH . T 5 HOH A 15 515 21 HOH HOH . T 5 HOH A 16 516 75 HOH HOH . T 5 HOH A 17 517 69 HOH HOH . T 5 HOH A 18 518 103 HOH HOH . T 5 HOH A 19 519 76 HOH HOH . T 5 HOH A 20 520 72 HOH HOH . T 5 HOH A 21 521 88 HOH HOH . T 5 HOH A 22 522 27 HOH HOH . T 5 HOH A 23 523 46 HOH HOH . T 5 HOH A 24 524 53 HOH HOH . T 5 HOH A 25 525 106 HOH HOH . T 5 HOH A 26 526 57 HOH HOH . T 5 HOH A 27 527 94 HOH HOH . T 5 HOH A 28 528 60 HOH HOH . T 5 HOH A 29 529 38 HOH HOH . T 5 HOH A 30 530 126 HOH HOH . U 5 HOH B 1 501 19 HOH HOH . U 5 HOH B 2 502 15 HOH HOH . U 5 HOH B 3 503 54 HOH HOH . U 5 HOH B 4 504 6 HOH HOH . U 5 HOH B 5 505 143 HOH HOH . U 5 HOH B 6 506 98 HOH HOH . U 5 HOH B 7 507 11 HOH HOH . U 5 HOH B 8 508 3 HOH HOH . U 5 HOH B 9 509 40 HOH HOH . U 5 HOH B 10 510 55 HOH HOH . U 5 HOH B 11 511 89 HOH HOH . U 5 HOH B 12 512 43 HOH HOH . U 5 HOH B 13 513 118 HOH HOH . U 5 HOH B 14 514 17 HOH HOH . U 5 HOH B 15 515 102 HOH HOH . U 5 HOH B 16 516 81 HOH HOH . U 5 HOH B 17 517 14 HOH HOH . U 5 HOH B 18 518 31 HOH HOH . U 5 HOH B 19 519 71 HOH HOH . U 5 HOH B 20 520 48 HOH HOH . U 5 HOH B 21 521 13 HOH HOH . U 5 HOH B 22 522 2 HOH HOH . U 5 HOH B 23 523 115 HOH HOH . U 5 HOH B 24 524 80 HOH HOH . U 5 HOH B 25 525 117 HOH HOH . U 5 HOH B 26 526 51 HOH HOH . U 5 HOH B 27 527 113 HOH HOH . U 5 HOH B 28 528 34 HOH HOH . U 5 HOH B 29 529 120 HOH HOH . U 5 HOH B 30 530 141 HOH HOH . U 5 HOH B 31 531 30 HOH HOH . U 5 HOH B 32 532 101 HOH HOH . U 5 HOH B 33 533 107 HOH HOH . U 5 HOH B 34 534 136 HOH HOH . V 5 HOH C 1 501 35 HOH HOH . V 5 HOH C 2 502 64 HOH HOH . V 5 HOH C 3 503 28 HOH HOH . V 5 HOH C 4 504 122 HOH HOH . V 5 HOH C 5 505 59 HOH HOH . V 5 HOH C 6 506 82 HOH HOH . V 5 HOH C 7 507 128 HOH HOH . V 5 HOH C 8 508 68 HOH HOH . V 5 HOH C 9 509 9 HOH HOH . V 5 HOH C 10 510 119 HOH HOH . V 5 HOH C 11 511 16 HOH HOH . V 5 HOH C 12 512 25 HOH HOH . V 5 HOH C 13 513 33 HOH HOH . V 5 HOH C 14 514 50 HOH HOH . V 5 HOH C 15 515 138 HOH HOH . V 5 HOH C 16 516 45 HOH HOH . V 5 HOH C 17 517 84 HOH HOH . V 5 HOH C 18 518 133 HOH HOH . V 5 HOH C 19 519 116 HOH HOH . V 5 HOH C 20 520 140 HOH HOH . V 5 HOH C 21 521 91 HOH HOH . V 5 HOH C 22 522 105 HOH HOH . V 5 HOH C 23 523 44 HOH HOH . V 5 HOH C 24 524 134 HOH HOH . V 5 HOH C 25 525 137 HOH HOH . V 5 HOH C 26 526 125 HOH HOH . V 5 HOH C 27 527 66 HOH HOH . V 5 HOH C 28 528 132 HOH HOH . W 5 HOH D 1 501 7 HOH HOH . W 5 HOH D 2 502 12 HOH HOH . W 5 HOH D 3 503 39 HOH HOH . W 5 HOH D 4 504 52 HOH HOH . W 5 HOH D 5 505 26 HOH HOH . W 5 HOH D 6 506 77 HOH HOH . W 5 HOH D 7 507 62 HOH HOH . W 5 HOH D 8 508 67 HOH HOH . W 5 HOH D 9 509 41 HOH HOH . W 5 HOH D 10 510 65 HOH HOH . W 5 HOH D 11 511 20 HOH HOH . W 5 HOH D 12 512 58 HOH HOH . W 5 HOH D 13 513 90 HOH HOH . W 5 HOH D 14 514 100 HOH HOH . W 5 HOH D 15 515 42 HOH HOH . W 5 HOH D 16 516 63 HOH HOH . W 5 HOH D 17 517 5 HOH HOH . W 5 HOH D 18 518 4 HOH HOH . W 5 HOH D 19 519 99 HOH HOH . W 5 HOH D 20 520 22 HOH HOH . W 5 HOH D 21 521 47 HOH HOH . W 5 HOH D 22 522 1 HOH HOH . W 5 HOH D 23 523 83 HOH HOH . W 5 HOH D 24 524 95 HOH HOH . W 5 HOH D 25 525 79 HOH HOH . W 5 HOH D 26 526 73 HOH HOH . W 5 HOH D 27 527 93 HOH HOH . W 5 HOH D 28 528 124 HOH HOH . W 5 HOH D 29 529 10 HOH HOH . W 5 HOH D 30 530 130 HOH HOH . W 5 HOH D 31 531 110 HOH HOH . W 5 HOH D 32 532 56 HOH HOH . W 5 HOH D 33 533 97 HOH HOH . W 5 HOH D 34 534 112 HOH HOH . W 5 HOH D 35 535 32 HOH HOH . W 5 HOH D 36 536 104 HOH HOH . W 5 HOH D 37 537 24 HOH HOH . W 5 HOH D 38 538 108 HOH HOH . W 5 HOH D 39 539 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 D4A . . . S 4 -15.588 -13.532 17.099 1 59.14 ? C4 D4A 403 D 1 HETATM 2 C C14 D4A . . . S 4 -13.733 -11.965 22.651 1 41.2 ? C14 D4A 403 D 1 HETATM 3 C C5 D4A . . . S 4 -13.21 -13.709 16.831 1 59.59 ? C5 D4A 403 D 1 HETATM 4 C C6 D4A . . . S 4 -15.645 -12.575 16.108 1 59.34 ? C6 D4A 403 D 1 HETATM 5 C C11 D4A . . . S 4 -13.355 -16.163 20.312 1 46.07 ? C11 D4A 403 D 1 HETATM 6 C C7 D4A . . . S 4 -13.25 -12.745 15.844 1 60.48 ? C7 D4A 403 D 1 HETATM 7 C C8 D4A . . . S 4 -10.189 -15.635 18.573 1 35.48 ? C8 D4A 403 D 1 HETATM 8 C C9 D4A . . . S 4 -8.578 -17.674 17.66 1 40.42 ? C9 D4A 403 D 1 HETATM 9 C C10 D4A . . . S 4 -11.961 -14.948 21.784 1 42.77 ? C10 D4A 403 D 1 HETATM 10 C C12 D4A . . . S 4 -11.926 -10.581 23.015 1 35.85 ? C12 D4A 403 D 1 HETATM 11 C C13 D4A . . . S 4 -12.838 -9.977 23.849 1 36.7 ? C13 D4A 403 D 1 HETATM 12 C C3 D4A . . . S 4 -12.539 -16.146 21.42 1 44.43 ? C3 D4A 403 D 1 HETATM 13 C C1 D4A . . . S 4 -10.742 -16.842 18.189 1 36.77 ? C1 D4A 403 D 1 HETATM 14 C C2 D4A . . . S 4 -9.94 -17.869 17.736 1 38.19 ? C2 D4A 403 D 1 HETATM 15 C C15 D4A . . . S 4 -12.414 -11.724 22.322 1 38.05 ? C15 D4A 403 D 1 HETATM 16 C C16 D4A . . . S 4 -14.38 -14.097 17.468 1 57.74 ? C16 D4A 403 D 1 HETATM 17 C C17 D4A . . . S 4 -14.469 -12.191 15.496 1 61.21 ? C17 D4A 403 D 1 HETATM 18 C C18 D4A . . . S 4 -8.822 -15.44 18.514 1 36.23 ? C18 D4A 403 D 1 HETATM 19 C C19 D4A . . . S 4 -8.018 -16.467 18.045 1 40.68 ? C19 D4A 403 D 1 HETATM 20 C C20 D4A . . . S 4 -12.222 -13.808 21.045 1 41.31 ? C20 D4A 403 D 1 HETATM 21 C C21 D4A . . . S 4 -13.566 -14.994 19.61 1 47.9 ? C21 D4A 403 D 1 HETATM 22 C C22 D4A . . . S 4 -9.309 -13.114 19.887 1 36.23 ? C22 D4A 403 D 1 HETATM 23 C C23 D4A . . . S 4 -10.224 -12.287 19.367 1 36.42 ? C23 D4A 403 D 1 HETATM 24 C C24 D4A . . . S 4 -9.327 -13.37 21.35 1 36.46 ? C24 D4A 403 D 1 HETATM 25 C C25 D4A . . . S 4 -11.312 -11.657 20.154 1 36.01 ? C25 D4A 403 D 1 HETATM 26 C C26 D4A . . . S 4 -11.572 -12.493 21.392 1 37.85 ? C26 D4A 403 D 1 HETATM 27 N N27 D4A . . . S 4 -13.019 -13.825 19.969 1 44.98 ? N27 D4A 403 D 1 HETATM 28 N N28 D4A . . . S 4 -14.382 -15.075 18.475 1 53.43 ? N28 D4A 403 D 1 HETATM 29 O O29 D4A . . . S 4 -8.527 -14.099 21.91 1 35.66 ? O29 D4A 403 D 1 HETATM 30 O O30 D4A . . . S 4 -10.316 -12.717 22.04 1 37.74 ? O30 D4A 403 D 1 HETATM 31 O O31 D4A . . . S 4 -10.274 -12.021 18.023 1 35.96 ? O31 D4A 403 D 1 HETATM 32 F F32 D4A . . . S 4 -14.522 -11.261 14.539 1 61.67 ? F32 D4A 403 D 1 HETATM 33 S S33 D4A . . . S 4 -14.325 -10.819 23.783 1 44.33 ? S33 D4A 403 D 1 HETATM 34 S S34 D4A . . . S 4 -8.08 -13.903 18.978 1 36.24 ? S34 D4A 403 D 1 HETATM 35 CL CL35 D4A . . . S 4 -6.297 -16.271 17.903 1 43.81 ? CL35 D4A 403 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #