data_6BB5 # _model_server_result.job_id arfoVYGTPMQvdTHjbnSbZA _model_server_result.datetime_utc '2024-11-22 18:31:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bb5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 6BB5 # _exptl.entry_id 6BB5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 31.999 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXYGEN MOLECULE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BB5 _cell.length_a 53.73 _cell.length_b 53.73 _cell.length_c 192.29 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BB5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 86 A HIS 87 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 C FE HEM . A HEM 201 1_555 D O1 OXY . A OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? metalc ? metalc3 C FE HEM . A HEM 201 1_555 D O2 OXY . A OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc4 B NE2 HIS 91 B HIS 92 1_555 E FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc5 E FE HEM . B HEM 201 1_555 F O1 OXY . B OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? metalc ? metalc6 E FE HEM . B HEM 201 1_555 F O2 OXY . B OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? # _chem_comp.formula O2 _chem_comp.formula_weight 31.999 _chem_comp.id OXY _chem_comp.mon_nstd_flag . _chem_comp.name 'OXYGEN MOLECULE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 O1 _chem_comp_bond.atom_id_2 O2 _chem_comp_bond.comp_id OXY _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 298 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 6BB5 _atom_sites.fract_transf_matrix[1][1] 0.018612 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 201 142 HEM HEM . D 4 OXY A 1 202 143 OXY OXY . E 3 HEM B 1 201 147 HEM HEM . F 4 OXY B 1 202 148 OXY OXY . G 5 HOH A 1 301 106 HOH HOH . G 5 HOH A 2 302 33 HOH HOH . G 5 HOH A 3 303 40 HOH HOH . G 5 HOH A 4 304 22 HOH HOH . G 5 HOH A 5 305 36 HOH HOH . G 5 HOH A 6 306 90 HOH HOH . G 5 HOH A 7 307 49 HOH HOH . G 5 HOH A 8 308 29 HOH HOH . G 5 HOH A 9 309 8 HOH HOH . G 5 HOH A 10 310 92 HOH HOH . G 5 HOH A 11 311 63 HOH HOH . G 5 HOH A 12 312 13 HOH HOH . G 5 HOH A 13 313 80 HOH HOH . G 5 HOH A 14 314 17 HOH HOH . G 5 HOH A 15 315 15 HOH HOH . G 5 HOH A 16 316 60 HOH HOH . G 5 HOH A 17 317 105 HOH HOH . G 5 HOH A 18 318 3 HOH HOH . G 5 HOH A 19 319 21 HOH HOH . G 5 HOH A 20 320 64 HOH HOH . G 5 HOH A 21 321 98 HOH HOH . G 5 HOH A 22 322 27 HOH HOH . G 5 HOH A 23 323 7 HOH HOH . G 5 HOH A 24 324 25 HOH HOH . G 5 HOH A 25 325 26 HOH HOH . G 5 HOH A 26 326 67 HOH HOH . G 5 HOH A 27 327 5 HOH HOH . G 5 HOH A 28 328 53 HOH HOH . G 5 HOH A 29 329 100 HOH HOH . G 5 HOH A 30 330 44 HOH HOH . G 5 HOH A 31 331 101 HOH HOH . G 5 HOH A 32 332 57 HOH HOH . G 5 HOH A 33 333 28 HOH HOH . G 5 HOH A 34 334 24 HOH HOH . G 5 HOH A 35 335 48 HOH HOH . G 5 HOH A 36 336 43 HOH HOH . G 5 HOH A 37 337 89 HOH HOH . G 5 HOH A 38 338 82 HOH HOH . G 5 HOH A 39 339 88 HOH HOH . G 5 HOH A 40 340 66 HOH HOH . G 5 HOH A 41 341 109 HOH HOH . G 5 HOH A 42 342 86 HOH HOH . G 5 HOH A 43 343 77 HOH HOH . G 5 HOH A 44 344 61 HOH HOH . G 5 HOH A 45 345 78 HOH HOH . G 5 HOH A 46 346 73 HOH HOH . H 5 HOH B 1 301 55 HOH HOH . H 5 HOH B 2 302 95 HOH HOH . H 5 HOH B 3 303 84 HOH HOH . H 5 HOH B 4 304 93 HOH HOH . H 5 HOH B 5 305 39 HOH HOH . H 5 HOH B 6 306 2 HOH HOH . H 5 HOH B 7 307 35 HOH HOH . H 5 HOH B 8 308 11 HOH HOH . H 5 HOH B 9 309 108 HOH HOH . H 5 HOH B 10 310 65 HOH HOH . H 5 HOH B 11 311 103 HOH HOH . H 5 HOH B 12 312 91 HOH HOH . H 5 HOH B 13 313 18 HOH HOH . H 5 HOH B 14 314 99 HOH HOH . H 5 HOH B 15 315 34 HOH HOH . H 5 HOH B 16 316 45 HOH HOH . H 5 HOH B 17 317 87 HOH HOH . H 5 HOH B 18 318 23 HOH HOH . H 5 HOH B 19 319 6 HOH HOH . H 5 HOH B 20 320 10 HOH HOH . H 5 HOH B 21 321 97 HOH HOH . H 5 HOH B 22 322 50 HOH HOH . H 5 HOH B 23 323 104 HOH HOH . H 5 HOH B 24 324 1 HOH HOH . H 5 HOH B 25 325 9 HOH HOH . H 5 HOH B 26 326 58 HOH HOH . H 5 HOH B 27 327 19 HOH HOH . H 5 HOH B 28 328 42 HOH HOH . H 5 HOH B 29 329 12 HOH HOH . H 5 HOH B 30 330 56 HOH HOH . H 5 HOH B 31 331 30 HOH HOH . H 5 HOH B 32 332 79 HOH HOH . H 5 HOH B 33 333 16 HOH HOH . H 5 HOH B 34 334 70 HOH HOH . H 5 HOH B 35 335 32 HOH HOH . H 5 HOH B 36 336 51 HOH HOH . H 5 HOH B 37 337 59 HOH HOH . H 5 HOH B 38 338 107 HOH HOH . H 5 HOH B 39 339 96 HOH HOH . H 5 HOH B 40 340 37 HOH HOH . H 5 HOH B 41 341 41 HOH HOH . H 5 HOH B 42 342 83 HOH HOH . H 5 HOH B 43 343 46 HOH HOH . H 5 HOH B 44 344 4 HOH HOH . H 5 HOH B 45 345 47 HOH HOH . H 5 HOH B 46 346 14 HOH HOH . H 5 HOH B 47 347 72 HOH HOH . H 5 HOH B 48 348 31 HOH HOH . H 5 HOH B 49 349 85 HOH HOH . H 5 HOH B 50 350 20 HOH HOH . H 5 HOH B 51 351 81 HOH HOH . H 5 HOH B 52 352 38 HOH HOH . H 5 HOH B 53 353 68 HOH HOH . H 5 HOH B 54 354 52 HOH HOH . H 5 HOH B 55 355 54 HOH HOH . H 5 HOH B 56 356 71 HOH HOH . H 5 HOH B 57 357 76 HOH HOH . H 5 HOH B 58 358 94 HOH HOH . H 5 HOH B 59 359 75 HOH HOH . H 5 HOH B 60 360 74 HOH HOH . H 5 HOH B 61 361 62 HOH HOH . H 5 HOH B 62 362 69 HOH HOH . H 5 HOH B 63 363 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OXY . . . D 4 39.016 29.191 16.495 1 33.64 ? O1 OXY 202 A 1 HETATM 2 O O2 OXY . . . D 4 38.402 28.194 16.779 1 27.31 ? O2 OXY 202 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 2 #