data_6BB7 # _model_server_result.job_id 7CReTNrYKttWQ26DhfjmEA _model_server_result.datetime_utc '2024-10-20 00:24:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bb7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 6BB7 # _exptl.entry_id 6BB7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 109.126 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-methylpyridin-2-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BB7 _cell.length_a 100.11 _cell.length_b 100.11 _cell.length_c 100.11 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BB7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_456 z-1/2,-x+1/2,-y+1 0 0 1 -1 0 0 0 -1 0 -50.055 50.055 100.11 3 'crystal symmetry operation' 12_565 -y+1/2,-z+1,x+1/2 0 -1 0 0 0 -1 1 0 0 50.055 100.11 50.055 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 32 A ILE 32 1_555 A N CME 33 A CME 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C CME 33 A CME 33 1_555 A N GLY 34 A GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C6 H7 N O' _chem_comp.formula_weight 109.126 _chem_comp.id D4V _chem_comp.mon_nstd_flag . _chem_comp.name 3-methylpyridin-2-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(R)-N-[2-[1-(AMINOIMINOMETHYL)-3-PIPERIDINYL]-1-OXOETHYL]-4-(PHENYLETHYNYL)-L-PHENYLALANINE METHYL ESTER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 D4V sing 104 n y C2 C1 D4V doub 105 n y C3 C4 D4V doub 106 n y C C1 D4V sing 107 n n C1 C5 D4V sing 108 n y C4 N D4V sing 109 n y C5 N D4V doub 110 n y C5 O D4V sing 111 n n C4 H5 D4V sing 112 n n C3 H4 D4V sing 113 n n C2 H3 D4V sing 114 n n C H1 D4V sing 115 n n C H2 D4V sing 116 n n C H D4V sing 117 n n O H7 D4V sing 118 n n # _atom_sites.entry_id 6BB7 _atom_sites.fract_transf_matrix[1][1] 0.009989 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009989 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 301 1 DMS DMS . C 2 DMS A 1 302 2 DMS DMS . D 2 DMS A 1 303 6 DMS DMS . E 2 DMS A 1 304 10 DMS DMS . F 3 D4V A 1 305 1 D4V FRG . G 4 HOH A 1 401 209 HOH HOH . G 4 HOH A 2 402 206 HOH HOH . G 4 HOH A 3 403 238 HOH HOH . G 4 HOH A 4 404 143 HOH HOH . G 4 HOH A 5 405 208 HOH HOH . G 4 HOH A 6 406 172 HOH HOH . G 4 HOH A 7 407 44 HOH HOH . G 4 HOH A 8 408 60 HOH HOH . G 4 HOH A 9 409 41 HOH HOH . G 4 HOH A 10 410 124 HOH HOH . G 4 HOH A 11 411 42 HOH HOH . G 4 HOH A 12 412 250 HOH HOH . G 4 HOH A 13 413 138 HOH HOH . G 4 HOH A 14 414 160 HOH HOH . G 4 HOH A 15 415 134 HOH HOH . G 4 HOH A 16 416 17 HOH HOH . G 4 HOH A 17 417 72 HOH HOH . G 4 HOH A 18 418 58 HOH HOH . G 4 HOH A 19 419 85 HOH HOH . G 4 HOH A 20 420 188 HOH HOH . G 4 HOH A 21 421 99 HOH HOH . G 4 HOH A 22 422 97 HOH HOH . G 4 HOH A 23 423 100 HOH HOH . G 4 HOH A 24 424 105 HOH HOH . G 4 HOH A 25 425 25 HOH HOH . G 4 HOH A 26 426 132 HOH HOH . G 4 HOH A 27 427 173 HOH HOH . G 4 HOH A 28 428 151 HOH HOH . G 4 HOH A 29 429 29 HOH HOH . G 4 HOH A 30 430 214 HOH HOH . G 4 HOH A 31 431 79 HOH HOH . G 4 HOH A 32 432 183 HOH HOH . G 4 HOH A 33 433 274 HOH HOH . G 4 HOH A 34 434 127 HOH HOH . G 4 HOH A 35 435 255 HOH HOH . G 4 HOH A 36 436 73 HOH HOH . G 4 HOH A 37 437 48 HOH HOH . G 4 HOH A 38 438 20 HOH HOH . G 4 HOH A 39 439 147 HOH HOH . G 4 HOH A 40 440 242 HOH HOH . G 4 HOH A 41 441 86 HOH HOH . G 4 HOH A 42 442 2 HOH HOH . G 4 HOH A 43 443 4 HOH HOH . G 4 HOH A 44 444 63 HOH HOH . G 4 HOH A 45 445 109 HOH HOH . G 4 HOH A 46 446 6 HOH HOH . G 4 HOH A 47 447 94 HOH HOH . G 4 HOH A 48 448 87 HOH HOH . G 4 HOH A 49 449 247 HOH HOH . G 4 HOH A 50 450 113 HOH HOH . G 4 HOH A 51 451 27 HOH HOH . G 4 HOH A 52 452 262 HOH HOH . G 4 HOH A 53 453 47 HOH HOH . G 4 HOH A 54 454 3 HOH HOH . G 4 HOH A 55 455 264 HOH HOH . G 4 HOH A 56 456 71 HOH HOH . G 4 HOH A 57 457 111 HOH HOH . G 4 HOH A 58 458 142 HOH HOH . G 4 HOH A 59 459 14 HOH HOH . G 4 HOH A 60 460 56 HOH HOH . G 4 HOH A 61 461 76 HOH HOH . G 4 HOH A 62 462 50 HOH HOH . G 4 HOH A 63 463 92 HOH HOH . G 4 HOH A 64 464 123 HOH HOH . G 4 HOH A 65 465 43 HOH HOH . G 4 HOH A 66 466 26 HOH HOH . G 4 HOH A 67 467 170 HOH HOH . G 4 HOH A 68 468 88 HOH HOH . G 4 HOH A 69 469 28 HOH HOH . G 4 HOH A 70 470 9 HOH HOH . G 4 HOH A 71 471 53 HOH HOH . G 4 HOH A 72 472 65 HOH HOH . G 4 HOH A 73 473 1 HOH HOH . G 4 HOH A 74 474 152 HOH HOH . G 4 HOH A 75 475 54 HOH HOH . G 4 HOH A 76 476 179 HOH HOH . G 4 HOH A 77 477 7 HOH HOH . G 4 HOH A 78 478 33 HOH HOH . G 4 HOH A 79 479 96 HOH HOH . G 4 HOH A 80 480 77 HOH HOH . G 4 HOH A 81 481 202 HOH HOH . G 4 HOH A 82 482 61 HOH HOH . G 4 HOH A 83 483 16 HOH HOH . G 4 HOH A 84 484 198 HOH HOH . G 4 HOH A 85 485 223 HOH HOH . G 4 HOH A 86 486 69 HOH HOH . G 4 HOH A 87 487 98 HOH HOH . G 4 HOH A 88 488 11 HOH HOH . G 4 HOH A 89 489 95 HOH HOH . G 4 HOH A 90 490 5 HOH HOH . G 4 HOH A 91 491 62 HOH HOH . G 4 HOH A 92 492 78 HOH HOH . G 4 HOH A 93 493 256 HOH HOH . G 4 HOH A 94 494 137 HOH HOH . G 4 HOH A 95 495 8 HOH HOH . G 4 HOH A 96 496 18 HOH HOH . G 4 HOH A 97 497 24 HOH HOH . G 4 HOH A 98 498 36 HOH HOH . G 4 HOH A 99 499 64 HOH HOH . G 4 HOH A 100 500 175 HOH HOH . G 4 HOH A 101 501 22 HOH HOH . G 4 HOH A 102 502 40 HOH HOH . G 4 HOH A 103 503 180 HOH HOH . G 4 HOH A 104 504 161 HOH HOH . G 4 HOH A 105 505 55 HOH HOH . G 4 HOH A 106 506 154 HOH HOH . G 4 HOH A 107 507 38 HOH HOH . G 4 HOH A 108 508 70 HOH HOH . G 4 HOH A 109 509 19 HOH HOH . G 4 HOH A 110 510 51 HOH HOH . G 4 HOH A 111 511 46 HOH HOH . G 4 HOH A 112 512 200 HOH HOH . G 4 HOH A 113 513 91 HOH HOH . G 4 HOH A 114 514 222 HOH HOH . G 4 HOH A 115 515 67 HOH HOH . G 4 HOH A 116 516 133 HOH HOH . G 4 HOH A 117 517 141 HOH HOH . G 4 HOH A 118 518 121 HOH HOH . G 4 HOH A 119 519 215 HOH HOH . G 4 HOH A 120 520 139 HOH HOH . G 4 HOH A 121 521 57 HOH HOH . G 4 HOH A 122 522 52 HOH HOH . G 4 HOH A 123 523 103 HOH HOH . G 4 HOH A 124 524 66 HOH HOH . G 4 HOH A 125 525 89 HOH HOH . G 4 HOH A 126 526 205 HOH HOH . G 4 HOH A 127 527 224 HOH HOH . G 4 HOH A 128 528 23 HOH HOH . G 4 HOH A 129 529 59 HOH HOH . G 4 HOH A 130 530 21 HOH HOH . G 4 HOH A 131 531 84 HOH HOH . G 4 HOH A 132 532 107 HOH HOH . G 4 HOH A 133 533 68 HOH HOH . G 4 HOH A 134 534 31 HOH HOH . G 4 HOH A 135 535 10 HOH HOH . G 4 HOH A 136 536 12 HOH HOH . G 4 HOH A 137 537 150 HOH HOH . G 4 HOH A 138 538 104 HOH HOH . G 4 HOH A 139 539 90 HOH HOH . G 4 HOH A 140 540 167 HOH HOH . G 4 HOH A 141 541 168 HOH HOH . G 4 HOH A 142 542 219 HOH HOH . G 4 HOH A 143 543 273 HOH HOH . G 4 HOH A 144 544 30 HOH HOH . G 4 HOH A 145 545 194 HOH HOH . G 4 HOH A 146 546 82 HOH HOH . G 4 HOH A 147 547 149 HOH HOH . G 4 HOH A 148 548 80 HOH HOH . G 4 HOH A 149 549 83 HOH HOH . G 4 HOH A 150 550 75 HOH HOH . G 4 HOH A 151 551 102 HOH HOH . G 4 HOH A 152 552 34 HOH HOH . G 4 HOH A 153 553 35 HOH HOH . G 4 HOH A 154 554 210 HOH HOH . G 4 HOH A 155 555 81 HOH HOH . G 4 HOH A 156 556 37 HOH HOH . G 4 HOH A 157 557 45 HOH HOH . G 4 HOH A 158 558 237 HOH HOH . G 4 HOH A 159 559 74 HOH HOH . G 4 HOH A 160 560 207 HOH HOH . G 4 HOH A 161 561 15 HOH HOH . G 4 HOH A 162 562 182 HOH HOH . G 4 HOH A 163 563 114 HOH HOH . G 4 HOH A 164 564 153 HOH HOH . G 4 HOH A 165 565 39 HOH HOH . G 4 HOH A 166 566 117 HOH HOH . G 4 HOH A 167 567 199 HOH HOH . G 4 HOH A 168 568 271 HOH HOH . G 4 HOH A 169 569 93 HOH HOH . G 4 HOH A 170 570 259 HOH HOH . G 4 HOH A 171 571 201 HOH HOH . G 4 HOH A 172 572 136 HOH HOH . G 4 HOH A 173 573 239 HOH HOH . G 4 HOH A 174 574 101 HOH HOH . G 4 HOH A 175 575 252 HOH HOH . G 4 HOH A 176 576 251 HOH HOH . G 4 HOH A 177 577 249 HOH HOH . G 4 HOH A 178 578 276 HOH HOH . G 4 HOH A 179 579 277 HOH HOH . G 4 HOH A 180 580 257 HOH HOH . G 4 HOH A 181 581 176 HOH HOH . G 4 HOH A 182 582 125 HOH HOH . G 4 HOH A 183 583 129 HOH HOH . G 4 HOH A 184 584 145 HOH HOH . G 4 HOH A 185 585 106 HOH HOH . G 4 HOH A 186 586 174 HOH HOH . G 4 HOH A 187 587 178 HOH HOH . G 4 HOH A 188 588 165 HOH HOH . G 4 HOH A 189 589 258 HOH HOH . G 4 HOH A 190 590 140 HOH HOH . G 4 HOH A 191 591 108 HOH HOH . G 4 HOH A 192 592 181 HOH HOH . G 4 HOH A 193 593 275 HOH HOH . G 4 HOH A 194 594 267 HOH HOH . G 4 HOH A 195 595 157 HOH HOH . G 4 HOH A 196 596 227 HOH HOH . G 4 HOH A 197 597 119 HOH HOH . G 4 HOH A 198 598 213 HOH HOH . G 4 HOH A 199 599 187 HOH HOH . G 4 HOH A 200 600 189 HOH HOH . G 4 HOH A 201 601 144 HOH HOH . G 4 HOH A 202 602 197 HOH HOH . G 4 HOH A 203 603 263 HOH HOH . G 4 HOH A 204 604 184 HOH HOH . G 4 HOH A 205 605 235 HOH HOH . G 4 HOH A 206 606 112 HOH HOH . G 4 HOH A 207 607 193 HOH HOH . G 4 HOH A 208 608 220 HOH HOH . G 4 HOH A 209 609 32 HOH HOH . G 4 HOH A 210 610 159 HOH HOH . G 4 HOH A 211 611 131 HOH HOH . G 4 HOH A 212 612 135 HOH HOH . G 4 HOH A 213 613 217 HOH HOH . G 4 HOH A 214 614 126 HOH HOH . G 4 HOH A 215 615 130 HOH HOH . G 4 HOH A 216 616 243 HOH HOH . G 4 HOH A 217 617 110 HOH HOH . G 4 HOH A 218 618 248 HOH HOH . G 4 HOH A 219 619 236 HOH HOH . G 4 HOH A 220 620 270 HOH HOH . G 4 HOH A 221 621 122 HOH HOH . G 4 HOH A 222 622 155 HOH HOH . G 4 HOH A 223 623 163 HOH HOH . G 4 HOH A 224 624 230 HOH HOH . G 4 HOH A 225 625 128 HOH HOH . G 4 HOH A 226 626 186 HOH HOH . G 4 HOH A 227 627 221 HOH HOH . G 4 HOH A 228 628 118 HOH HOH . G 4 HOH A 229 629 146 HOH HOH . G 4 HOH A 230 630 265 HOH HOH . G 4 HOH A 231 631 156 HOH HOH . G 4 HOH A 232 632 169 HOH HOH . G 4 HOH A 233 633 234 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 D4V . B . F 3 -3.943 28.565 54.557 0.98 28.98 ? C4 D4V 305 A 1 HETATM 2 C C5 D4V . B . F 3 -1.682 27.753 54.947 0.98 21.66 ? C5 D4V 305 A 1 HETATM 3 C C3 D4V . B . F 3 -4.348 27.261 54.138 0.98 38.8 ? C3 D4V 305 A 1 HETATM 4 C C2 D4V . B . F 3 -3.401 26.183 54.116 0.98 30.24 ? C2 D4V 305 A 1 HETATM 5 C C1 D4V . B . F 3 -2.096 26.393 54.52 0.98 27.14 ? C1 D4V 305 A 1 HETATM 6 O O D4V . B . F 3 -0.395 28.008 55.328 0.98 25.44 ? O D4V 305 A 1 HETATM 7 C C D4V . B . F 3 -1.085 25.263 54.506 0.98 45.74 ? C D4V 305 A 1 HETATM 8 N N D4V . B . F 3 -2.583 28.799 54.955 0.98 23.64 ? N D4V 305 A 1 HETATM 9 H H5 D4V . B . F 3 -4.556 29.265 54.561 0.98 34.78 ? H5 D4V 305 A 1 HETATM 10 H H4 D4V . B . F 3 -5.228 27.111 53.876 0.98 46.55 ? H4 D4V 305 A 1 HETATM 11 H H3 D4V . B . F 3 -3.674 25.334 53.854 0.98 36.29 ? H3 D4V 305 A 1 HETATM 12 H H1 D4V . B . F 3 -1.55 24.414 54.456 0.98 54.89 ? H1 D4V 305 A 1 HETATM 13 H H2 D4V . B . F 3 -0.554 25.294 55.318 0.98 54.89 ? H2 D4V 305 A 1 HETATM 14 H H D4V . B . F 3 -0.503 25.36 53.736 0.98 54.89 ? H D4V 305 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #