data_6BC0
#
_model_server_result.job_id            kwfFresf_vJzkyBxBisjwg 
_model_server_result.datetime_utc      '2024-10-11 06:23:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bc0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    6BC0 
#
_exptl.entry_id    6BC0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              539.246 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6BC0 
_cell.length_a            73.16 
_cell.length_b            73.16 
_cell.length_c            266.27 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BC0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OG1 THR 23 F THR 19 1_555 C MG MG . F MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc2 B OG1 THR 41 F THR 37 1_555 C MG MG . F MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc3 C MG MG . F MG 201 1_555 D O2B GSP . F GSP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? 
metalc ? metalc4 C MG MG . F MG 201 1_555 D O2G GSP . F GSP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc5 C MG MG . F MG 201 1_555 F O HOH . F HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? 
metalc ? metalc6 C MG MG . F MG 201 1_555 F O HOH . F HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3 S' 
_chem_comp.formula_weight    539.246 
_chem_comp.id                GSP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O3B GSP sing 129 n n 
PG S1G GSP doub 130 n n 
PG O2G GSP sing 131 n n 
PG O3G GSP sing 132 n n 
O3B PB GSP sing 133 n n 
O2G HOG2 GSP sing 134 n n 
O3G HOG3 GSP sing 135 n n 
PB O1B GSP doub 136 n n 
PB O2B GSP sing 137 n n 
PB O3A GSP sing 138 n n 
O2B HOB2 GSP sing 139 n n 
PA O1A GSP doub 140 n n 
PA O2A GSP sing 141 n n 
PA O3A GSP sing 142 n n 
PA O5' GSP sing 143 n n 
O2A HOA2 GSP sing 144 n n 
O5' C5' GSP sing 145 n n 
C5' C4' GSP sing 146 n n 
C5' "H5'1" GSP sing 147 n n 
C5' "H5'2" GSP sing 148 n n 
C4' O4' GSP sing 149 n n 
C4' C3' GSP sing 150 n n 
C4' H4' GSP sing 151 n n 
O4' C1' GSP sing 152 n n 
C3' O3' GSP sing 153 n n 
C3' C2' GSP sing 154 n n 
C3' H3' GSP sing 155 n n 
O3' HO3' GSP sing 156 n n 
C2' O2' GSP sing 157 n n 
C2' C1' GSP sing 158 n n 
C2' H2' GSP sing 159 n n 
O2' HO2' GSP sing 160 n n 
C1' N9 GSP sing 161 n n 
C1' H1' GSP sing 162 n n 
N9 C8 GSP sing 163 n y 
N9 C4 GSP sing 164 n y 
C8 N7 GSP doub 165 n y 
C8 H8 GSP sing 166 n n 
N7 C5 GSP sing 167 n y 
C5 C6 GSP sing 168 n n 
C5 C4 GSP doub 169 n y 
C6 O6 GSP doub 170 n n 
C6 N1 GSP sing 171 n n 
N1 C2 GSP sing 172 n n 
N1 HN1 GSP sing 173 n n 
C2 N2 GSP sing 174 n n 
C2 N3 GSP doub 175 n n 
N2 HN21 GSP sing 176 n n 
N2 HN22 GSP sing 177 n n 
N3 C4 GSP sing 178 n n 
#
_atom_sites.entry_id                     6BC0 
_atom_sites.fract_transf_matrix[1][1]    0.013669 
_atom_sites.fract_transf_matrix[1][2]    0.007892 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015783 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003756 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG F 1 201 550 MG MG . 
D 4 GSP F 1 202 538 GSP GSP . 
E 5 HOH A 1 1201 4 HOH HOH . 
E 5 HOH A 2 1202 9 HOH HOH . 
E 5 HOH A 3 1203 18 HOH HOH . 
E 5 HOH A 4 1204 7 HOH HOH . 
E 5 HOH A 5 1205 11 HOH HOH . 
E 5 HOH A 6 1206 10 HOH HOH . 
E 5 HOH A 7 1207 5 HOH HOH . 
E 5 HOH A 8 1208 17 HOH HOH . 
E 5 HOH A 9 1209 13 HOH HOH . 
E 5 HOH A 10 1210 8 HOH HOH . 
E 5 HOH A 11 1211 19 HOH HOH . 
E 5 HOH A 12 1212 20 HOH HOH . 
E 5 HOH A 13 1213 33 HOH HOH . 
E 5 HOH A 14 1214 25 HOH HOH . 
E 5 HOH A 15 1215 31 HOH HOH . 
E 5 HOH A 16 1216 39 HOH HOH . 
E 5 HOH A 17 1217 1 HOH HOH . 
E 5 HOH A 18 1218 21 HOH HOH . 
E 5 HOH A 19 1219 26 HOH HOH . 
F 5 HOH F 1 301 34 HOH HOH . 
F 5 HOH F 2 302 44 HOH HOH . 
F 5 HOH F 3 303 29 HOH HOH . 
F 5 HOH F 4 304 23 HOH HOH . 
F 5 HOH F 5 305 41 HOH HOH . 
F 5 HOH F 6 306 38 HOH HOH . 
F 5 HOH F 7 307 2 HOH HOH . 
F 5 HOH F 8 308 12 HOH HOH . 
F 5 HOH F 9 309 32 HOH HOH . 
F 5 HOH F 10 310 604 HOH HOH . 
F 5 HOH F 11 311 3 HOH HOH . 
F 5 HOH F 12 312 603 HOH HOH . 
F 5 HOH F 13 313 605 HOH HOH . 
F 5 HOH F 14 314 24 HOH HOH . 
F 5 HOH F 15 315 37 HOH HOH . 
F 5 HOH F 16 316 6 HOH HOH . 
F 5 HOH F 17 317 36 HOH HOH . 
F 5 HOH F 18 318 40 HOH HOH . 
F 5 HOH F 19 319 15 HOH HOH . 
F 5 HOH F 20 320 22 HOH HOH . 
F 5 HOH F 21 321 601 HOH HOH . 
F 5 HOH F 22 322 30 HOH HOH . 
F 5 HOH F 23 323 43 HOH HOH . 
F 5 HOH F 24 324 14 HOH HOH . 
F 5 HOH F 25 325 42 HOH HOH . 
F 5 HOH F 26 326 27 HOH HOH . 
F 5 HOH F 27 327 28 HOH HOH . 
F 5 HOH F 28 328 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GSP . . . D 4 -18.701 17.444 5.025 1 78.74 ? PG GSP 202 F 1 
HETATM 2 O O3B GSP . . . D 4 -17.722 16.266 4.492 1 60.17 ? O3B GSP 202 F 1 
HETATM 3 S S1G GSP . . . D 4 -20.347 16.882 5.155 1 92.16 ? S1G GSP 202 F 1 
HETATM 4 O O2G GSP . . . D 4 -18.179 17.921 6.398 1 62.09 ? O2G GSP 202 F 1 
HETATM 5 O O3G GSP . . . D 4 -18.765 18.594 4.03 1 65.83 ? O3G GSP 202 F 1 
HETATM 6 P PB GSP . . . D 4 -16.131 16.282 4.373 1 78.57 ? PB GSP 202 F 1 
HETATM 7 O O1B GSP . . . D 4 -15.73 16.64 2.999 1 64.82 ? O1B GSP 202 F 1 
HETATM 8 O O2B GSP . . . D 4 -15.484 16.968 5.534 1 73 ? O2B GSP 202 F 1 
HETATM 9 P PA GSP . . . D 4 -14.808 13.949 5.39 1 79.47 ? PA GSP 202 F 1 
HETATM 10 O O1A GSP . . . D 4 -13.404 14.414 5.441 1 80.31 ? O1A GSP 202 F 1 
HETATM 11 O O2A GSP . . . D 4 -15.424 13.866 6.739 1 73.08 ? O2A GSP 202 F 1 
HETATM 12 O O3A GSP . . . D 4 -15.669 14.773 4.296 1 61.41 ? O3A GSP 202 F 1 
HETATM 13 O O5' GSP . . . D 4 -14.773 12.531 4.621 1 87.38 ? O5' GSP 202 F 1 
HETATM 14 C C5' GSP . . . D 4 -15.957 11.818 4.257 1 82.36 ? C5' GSP 202 F 1 
HETATM 15 C C4' GSP . . . D 4 -15.765 10.309 4.462 1 82.04 ? C4' GSP 202 F 1 
HETATM 16 O O4' GSP . . . D 4 -14.895 9.787 3.463 1 68.65 ? O4' GSP 202 F 1 
HETATM 17 C C3' GSP . . . D 4 -15.135 10.039 5.822 1 81.86 ? C3' GSP 202 F 1 
HETATM 18 O O3' GSP . . . D 4 -15.78 9.059 6.603 1 91.07 ? O3' GSP 202 F 1 
HETATM 19 C C2' GSP . . . D 4 -13.697 9.7 5.458 1 81.52 ? C2' GSP 202 F 1 
HETATM 20 O O2' GSP . . . D 4 -12.992 8.837 6.35 1 84.1 ? O2' GSP 202 F 1 
HETATM 21 C C1' GSP . . . D 4 -13.71 9.219 4.005 1 79.24 ? C1' GSP 202 F 1 
HETATM 22 N N9 GSP . . . D 4 -12.461 9.663 3.299 1 80.64 ? N9 GSP 202 F 1 
HETATM 23 C C8 GSP . . . D 4 -11.951 10.939 3.361 1 82.23 ? C8 GSP 202 F 1 
HETATM 24 N N7 GSP . . . D 4 -10.827 11.022 2.632 1 84.24 ? N7 GSP 202 F 1 
HETATM 25 C C5 GSP . . . D 4 -10.567 9.834 2.098 1 77.28 ? C5 GSP 202 F 1 
HETATM 26 C C6 GSP . . . D 4 -9.535 9.446 1.274 1 84.72 ? C6 GSP 202 F 1 
HETATM 27 O O6 GSP . . . D 4 -8.653 10.232 0.918 1 82.94 ? O6 GSP 202 F 1 
HETATM 28 N N1 GSP . . . D 4 -9.52 8.152 0.83 1 92.36 ? N1 GSP 202 F 1 
HETATM 29 C C2 GSP . . . D 4 -10.512 7.296 1.236 1 96.1 ? C2 GSP 202 F 1 
HETATM 30 N N2 GSP . . . D 4 -10.455 6.051 0.803 1 106.12 ? N2 GSP 202 F 1 
HETATM 31 N N3 GSP . . . D 4 -11.543 7.686 2.064 1 94.53 ? N3 GSP 202 F 1 
HETATM 32 C C4 GSP . . . D 4 -11.584 8.965 2.494 1 85.08 ? C4 GSP 202 F 1 
HETATM 33 H HOG2 GSP . . . D 4 -17.379 17.51 6.789 1 74.51 ? HOG2 GSP 202 F 1 
HETATM 34 H HOG3 GSP . . . D 4 -18.25 18.551 3.197 1 78.99 ? HOG3 GSP 202 F 1 
HETATM 35 H "H5'1" GSP . . . D 4 -16.196 12.016 3.212 1 98.84 ? "H5'1" GSP 202 F 1 
HETATM 36 H "H5'2" GSP . . . D 4 -16.793 12.165 4.865 1 98.84 ? "H5'2" GSP 202 F 1 
HETATM 37 H H4' GSP . . . D 4 -16.735 9.815 4.414 1 98.45 ? H4' GSP 202 F 1 
HETATM 38 H H3' GSP . . . D 4 -15.125 10.978 6.376 1 98.23 ? H3' GSP 202 F 1 
HETATM 39 H HO3' GSP . . . D 4 -15.162 8.318 6.772 1 109.28 ? HO3' GSP 202 F 1 
HETATM 40 H H2' GSP . . . D 4 -13.161 10.649 5.452 1 97.82 ? H2' GSP 202 F 1 
HETATM 41 H HO2' GSP . . . D 4 -12.636 8.072 5.851 1 100.92 ? HO2' GSP 202 F 1 
HETATM 42 H H1' GSP . . . D 4 -13.779 8.131 3.994 1 95.09 ? H1' GSP 202 F 1 
HETATM 43 H H8 GSP . . . D 4 -12.395 11.762 3.919 1 98.67 ? H8 GSP 202 F 1 
HETATM 44 H HN21 GSP . . . D 4 -11.169 5.384 1.078 1 127.34 ? HN21 GSP 202 F 1 
HETATM 45 H HN22 GSP . . . D 4 -9.699 5.761 0.189 1 127.34 ? HN22 GSP 202 F 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           45 
#