data_6BC1 # _model_server_result.job_id SstC_KOgqUHl1088FCF_Tg _model_server_result.datetime_utc '2024-11-02 13:25:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bc1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 6BC1 # _exptl.entry_id 6BC1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.246 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BC1 _cell.length_a 45.332 _cell.length_b 96.333 _cell.length_c 189.361 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BC1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 17 A THR 17 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc3 E O2G GSP . A GSP 201 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc4 E O2B GSP . A GSP 201 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc5 F MG MG . A MG 202 1_555 I O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc6 F MG MG . A MG 202 1_555 I O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc7 C OG1 THR 17 B THR 17 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc8 C OG1 THR 35 B THR 35 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc9 G O2G GSP . B GSP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc10 G O3G GSP . B GSP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc11 G O1B GSP . B GSP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C10 H16 N5 O13 P3 S' _chem_comp.formula_weight 539.246 _chem_comp.id GSP _chem_comp.mon_nstd_flag . _chem_comp.name "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O3B GSP sing 129 n n PG S1G GSP doub 130 n n PG O2G GSP sing 131 n n PG O3G GSP sing 132 n n O3B PB GSP sing 133 n n O2G HOG2 GSP sing 134 n n O3G HOG3 GSP sing 135 n n PB O1B GSP doub 136 n n PB O2B GSP sing 137 n n PB O3A GSP sing 138 n n O2B HOB2 GSP sing 139 n n PA O1A GSP doub 140 n n PA O2A GSP sing 141 n n PA O3A GSP sing 142 n n PA O5' GSP sing 143 n n O2A HOA2 GSP sing 144 n n O5' C5' GSP sing 145 n n C5' C4' GSP sing 146 n n C5' "H5'1" GSP sing 147 n n C5' "H5'2" GSP sing 148 n n C4' O4' GSP sing 149 n n C4' C3' GSP sing 150 n n C4' H4' GSP sing 151 n n O4' C1' GSP sing 152 n n C3' O3' GSP sing 153 n n C3' C2' GSP sing 154 n n C3' H3' GSP sing 155 n n O3' HO3' GSP sing 156 n n C2' O2' GSP sing 157 n n C2' C1' GSP sing 158 n n C2' H2' GSP sing 159 n n O2' HO2' GSP sing 160 n n C1' N9 GSP sing 161 n n C1' H1' GSP sing 162 n n N9 C8 GSP sing 163 n y N9 C4 GSP sing 164 n y C8 N7 GSP doub 165 n y C8 H8 GSP sing 166 n n N7 C5 GSP sing 167 n y C5 C6 GSP sing 168 n n C5 C4 GSP doub 169 n y C6 O6 GSP doub 170 n n C6 N1 GSP sing 171 n n N1 C2 GSP sing 172 n n N1 HN1 GSP sing 173 n n C2 N2 GSP sing 174 n n C2 N3 GSP doub 175 n n N2 HN21 GSP sing 176 n n N2 HN22 GSP sing 177 n n N3 C4 GSP sing 178 n n # _atom_sites.entry_id 6BC1 _atom_sites.fract_transf_matrix[1][1] 0.022059 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GSP A 1 201 538 GSP GSP . F 4 MG A 1 202 550 MG MG . G 3 GSP B 1 201 538 GSP GSP . H 4 MG B 1 202 550 MG MG . I 5 HOH A 1 301 10 HOH HOH . I 5 HOH A 2 302 17 HOH HOH . I 5 HOH A 3 303 35 HOH HOH . I 5 HOH A 4 304 69 HOH HOH . I 5 HOH A 5 305 111 HOH HOH . I 5 HOH A 6 306 45 HOH HOH . I 5 HOH A 7 307 57 HOH HOH . I 5 HOH A 8 308 118 HOH HOH . I 5 HOH A 9 309 119 HOH HOH . I 5 HOH A 10 310 88 HOH HOH . I 5 HOH A 11 311 34 HOH HOH . I 5 HOH A 12 312 11 HOH HOH . I 5 HOH A 13 313 32 HOH HOH . I 5 HOH A 14 314 31 HOH HOH . I 5 HOH A 15 315 26 HOH HOH . I 5 HOH A 16 316 13 HOH HOH . I 5 HOH A 17 317 25 HOH HOH . I 5 HOH A 18 318 97 HOH HOH . I 5 HOH A 19 319 4 HOH HOH . I 5 HOH A 20 320 76 HOH HOH . I 5 HOH A 21 321 7 HOH HOH . I 5 HOH A 22 322 20 HOH HOH . I 5 HOH A 23 323 90 HOH HOH . I 5 HOH A 24 324 130 HOH HOH . I 5 HOH A 25 325 129 HOH HOH . I 5 HOH A 26 326 115 HOH HOH . I 5 HOH A 27 327 36 HOH HOH . I 5 HOH A 28 328 117 HOH HOH . I 5 HOH A 29 329 112 HOH HOH . I 5 HOH A 30 330 66 HOH HOH . I 5 HOH A 31 331 47 HOH HOH . I 5 HOH A 32 332 24 HOH HOH . I 5 HOH A 33 333 132 HOH HOH . I 5 HOH A 34 334 114 HOH HOH . J 5 HOH C 1 1201 1 HOH HOH . J 5 HOH C 2 1202 93 HOH HOH . J 5 HOH C 3 1203 2 HOH HOH . J 5 HOH C 4 1204 101 HOH HOH . J 5 HOH C 5 1205 9 HOH HOH . J 5 HOH C 6 1206 126 HOH HOH . J 5 HOH C 7 1207 131 HOH HOH . J 5 HOH C 8 1208 16 HOH HOH . J 5 HOH C 9 1209 123 HOH HOH . J 5 HOH C 10 1210 73 HOH HOH . J 5 HOH C 11 1211 5 HOH HOH . J 5 HOH C 12 1212 15 HOH HOH . J 5 HOH C 13 1213 23 HOH HOH . J 5 HOH C 14 1214 116 HOH HOH . J 5 HOH C 15 1215 105 HOH HOH . J 5 HOH C 16 1216 6 HOH HOH . J 5 HOH C 17 1217 18 HOH HOH . J 5 HOH C 18 1218 30 HOH HOH . J 5 HOH C 19 1219 55 HOH HOH . J 5 HOH C 20 1220 82 HOH HOH . J 5 HOH C 21 1221 121 HOH HOH . J 5 HOH C 22 1222 41 HOH HOH . J 5 HOH C 23 1223 52 HOH HOH . J 5 HOH C 24 1224 29 HOH HOH . J 5 HOH C 25 1225 70 HOH HOH . J 5 HOH C 26 1226 42 HOH HOH . J 5 HOH C 27 1227 38 HOH HOH . J 5 HOH C 28 1228 94 HOH HOH . J 5 HOH C 29 1229 54 HOH HOH . J 5 HOH C 30 1230 89 HOH HOH . J 5 HOH C 31 1231 96 HOH HOH . J 5 HOH C 32 1232 100 HOH HOH . J 5 HOH C 33 1233 120 HOH HOH . J 5 HOH C 34 1234 3 HOH HOH . J 5 HOH C 35 1235 19 HOH HOH . J 5 HOH C 36 1236 59 HOH HOH . J 5 HOH C 37 1237 46 HOH HOH . J 5 HOH C 38 1238 51 HOH HOH . J 5 HOH C 39 1239 85 HOH HOH . J 5 HOH C 40 1240 53 HOH HOH . J 5 HOH C 41 1241 86 HOH HOH . K 5 HOH B 1 301 81 HOH HOH . K 5 HOH B 2 302 98 HOH HOH . K 5 HOH B 3 303 74 HOH HOH . K 5 HOH B 4 304 106 HOH HOH . K 5 HOH B 5 305 71 HOH HOH . K 5 HOH B 6 306 75 HOH HOH . K 5 HOH B 7 307 80 HOH HOH . K 5 HOH B 8 308 48 HOH HOH . K 5 HOH B 9 309 99 HOH HOH . K 5 HOH B 10 310 79 HOH HOH . K 5 HOH B 11 311 72 HOH HOH . K 5 HOH B 12 312 64 HOH HOH . K 5 HOH B 13 313 127 HOH HOH . K 5 HOH B 14 314 65 HOH HOH . K 5 HOH B 15 315 104 HOH HOH . K 5 HOH B 16 316 68 HOH HOH . K 5 HOH B 17 317 108 HOH HOH . K 5 HOH B 18 318 125 HOH HOH . K 5 HOH B 19 319 91 HOH HOH . K 5 HOH B 20 320 50 HOH HOH . K 5 HOH B 21 321 83 HOH HOH . K 5 HOH B 22 322 62 HOH HOH . L 5 HOH D 1 1201 40 HOH HOH . L 5 HOH D 2 1202 124 HOH HOH . L 5 HOH D 3 1203 8 HOH HOH . L 5 HOH D 4 1204 37 HOH HOH . L 5 HOH D 5 1205 39 HOH HOH . L 5 HOH D 6 1206 12 HOH HOH . L 5 HOH D 7 1207 78 HOH HOH . L 5 HOH D 8 1208 122 HOH HOH . L 5 HOH D 9 1209 49 HOH HOH . L 5 HOH D 10 1210 92 HOH HOH . L 5 HOH D 11 1211 21 HOH HOH . L 5 HOH D 12 1212 67 HOH HOH . L 5 HOH D 13 1213 44 HOH HOH . L 5 HOH D 14 1214 33 HOH HOH . L 5 HOH D 15 1215 103 HOH HOH . L 5 HOH D 16 1216 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GSP . . . G 3 -3.878 -5.118 -2.018 1 114.67 ? PG GSP 201 B 1 HETATM 2 O O3B GSP . . . G 3 -4.565 -6.219 -1.064 1 144.64 ? O3B GSP 201 B 1 HETATM 3 S S1G GSP . . . G 3 -3.933 -3.58 -1.292 1 53.47 ? S1G GSP 201 B 1 HETATM 4 O O2G GSP . . . G 3 -2.415 -5.522 -2.281 1 100.74 ? O2G GSP 201 B 1 HETATM 5 O O3G GSP . . . G 3 -4.636 -5.065 -3.356 1 92.84 ? O3G GSP 201 B 1 HETATM 6 P PB GSP . . . G 3 -5.196 -7.571 -1.678 1 96.8 ? PB GSP 201 B 1 HETATM 7 O O1B GSP . . . G 3 -4.474 -8.014 -2.892 1 74.1 ? O1B GSP 201 B 1 HETATM 8 O O2B GSP . . . G 3 -6.635 -7.36 -1.952 1 69.87 ? O2B GSP 201 B 1 HETATM 9 P PA GSP . . . G 3 -3.782 -9.688 -0.525 1 76.83 ? PA GSP 201 B 1 HETATM 10 O O1A GSP . . . G 3 -3.937 -10.668 -1.625 1 68.56 ? O1A GSP 201 B 1 HETATM 11 O O2A GSP . . . G 3 -2.497 -8.962 -0.64 1 92.46 ? O2A GSP 201 B 1 HETATM 12 O O3A GSP . . . G 3 -5.029 -8.668 -0.514 1 120.96 ? O3A GSP 201 B 1 HETATM 13 O O5' GSP . . . G 3 -3.933 -10.413 0.906 1 83.02 ? O5' GSP 201 B 1 HETATM 14 C C5' GSP . . . G 3 -3.765 -9.64 2.073 1 88.83 ? C5' GSP 201 B 1 HETATM 15 C C4' GSP . . . G 3 -3.353 -10.476 3.283 1 96.48 ? C4' GSP 201 B 1 HETATM 16 O O4' GSP . . . G 3 -4.388 -11.385 3.594 1 94.36 ? O4' GSP 201 B 1 HETATM 17 C C3' GSP . . . G 3 -2.085 -11.284 3.053 1 92.39 ? C3' GSP 201 B 1 HETATM 18 O O3' GSP . . . G 3 -1.104 -10.962 4.008 1 82.34 ? O3' GSP 201 B 1 HETATM 19 C C2' GSP . . . G 3 -2.493 -12.735 3.183 1 95.36 ? C2' GSP 201 B 1 HETATM 20 O O2' GSP . . . G 3 -1.616 -13.396 4.073 1 95.9 ? O2' GSP 201 B 1 HETATM 21 C C1' GSP . . . G 3 -3.932 -12.718 3.679 1 99.93 ? C1' GSP 201 B 1 HETATM 22 N N9 GSP . . . G 3 -4.816 -13.588 2.879 1 97.33 ? N9 GSP 201 B 1 HETATM 23 C C8 GSP . . . G 3 -5.215 -13.389 1.581 1 92.57 ? C8 GSP 201 B 1 HETATM 24 N N7 GSP . . . G 3 -6.026 -14.409 1.216 1 91.65 ? N7 GSP 201 B 1 HETATM 25 C C5 GSP . . . G 3 -6.157 -15.259 2.258 1 101.62 ? C5 GSP 201 B 1 HETATM 26 C C6 GSP . . . G 3 -6.863 -16.449 2.423 1 91.77 ? C6 GSP 201 B 1 HETATM 27 O O6 GSP . . . G 3 -7.538 -16.914 1.502 1 56.15 ? O6 GSP 201 B 1 HETATM 28 N N1 GSP . . . G 3 -6.804 -17.111 3.633 1 106.18 ? N1 GSP 201 B 1 HETATM 29 C C2 GSP . . . G 3 -6.048 -16.591 4.666 1 101.95 ? C2 GSP 201 B 1 HETATM 30 N N2 GSP . . . G 3 -5.986 -17.223 5.835 1 84.45 ? N2 GSP 201 B 1 HETATM 31 N N3 GSP . . . G 3 -5.352 -15.411 4.491 1 100.45 ? N3 GSP 201 B 1 HETATM 32 C C4 GSP . . . G 3 -5.402 -14.752 3.309 1 101.17 ? C4 GSP 201 B 1 HETATM 33 H HOG2 GSP . . . G 3 -2.054 -6.341 -1.883 1 120.89 ? HOG2 GSP 201 B 1 HETATM 34 H HOG3 GSP . . . G 3 -5.406 -5.652 -3.507 1 111.41 ? HOG3 GSP 201 B 1 HETATM 35 H "H5'1" GSP . . . G 3 -3.006 -8.879 1.89 1 106.59 ? "H5'1" GSP 201 B 1 HETATM 36 H "H5'2" GSP . . . G 3 -4.699 -9.125 2.297 1 106.59 ? "H5'2" GSP 201 B 1 HETATM 37 H H4' GSP . . . G 3 -3.188 -9.806 4.127 1 115.78 ? H4' GSP 201 B 1 HETATM 38 H H3' GSP . . . G 3 -1.715 -11.1 2.045 1 110.86 ? H3' GSP 201 B 1 HETATM 39 H HO3' GSP . . . G 3 -0.901 -11.754 4.548 1 98.8 ? HO3' GSP 201 B 1 HETATM 40 H H2' GSP . . . G 3 -2.459 -13.204 2.2 1 114.43 ? H2' GSP 201 B 1 HETATM 41 H HO2' GSP . . . G 3 -2.12 -13.719 4.849 1 115.07 ? HO2' GSP 201 B 1 HETATM 42 H H1' GSP . . . G 3 -3.943 -13.043 4.72 1 119.92 ? H1' GSP 201 B 1 HETATM 43 H H8 GSP . . . G 3 -4.927 -12.549 0.948 1 111.08 ? H8 GSP 201 B 1 HETATM 44 H HN21 GSP . . . G 3 -5.43 -16.838 6.591 1 101.34 ? HN21 GSP 201 B 1 HETATM 45 H HN22 GSP . . . G 3 -6.492 -18.093 5.969 1 101.34 ? HN22 GSP 201 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 625 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 45 #