data_6BC2 # _model_server_result.job_id nr90Qh_2hh9DL6iObW9Kiw _model_server_result.datetime_utc '2024-11-27 22:08:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bc2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6BC2 # _exptl.entry_id 6BC2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 489.563 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description acetylsisomicin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.82 _cell.angle_gamma 90 _cell.entry_id 6BC2 _cell.length_a 84.409 _cell.length_b 86.866 _cell.length_c 50.313 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BC2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 302 1_555 D O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc2 C MG MG . A MG 302 1_555 D O HOH . A HOH 426 2_557 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc3 C MG MG . A MG 302 1_555 D O HOH . A HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc4 C MG MG . A MG 302 1_555 D O HOH . A HOH 428 2_557 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? # _chem_comp.formula 'C21 H39 N5 O8' _chem_comp.formula_weight 489.563 _chem_comp.id DVM _chem_comp.mon_nstd_flag . _chem_comp.name acetylsisomicin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-[(1S,2R,3R,4S,5R)-5-amino-2-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-4-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-3-hydroxycyclohexyl]acetamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C DVM doub 83 n n CH3 C DVM sing 84 n n C N32 DVM sing 85 n n N32 C32 DVM sing 86 n n C32 C22 DVM sing 87 n n C32 C42 DVM sing 88 n n C22 C12 DVM sing 89 n n C12 N12 DVM sing 90 n n C12 C62 DVM sing 91 n n O11 C42 DVM sing 92 n n O11 C11 DVM sing 93 n n C93 N33 DVM sing 94 n n C42 C52 DVM sing 95 n n O23 C23 DVM sing 96 n n C62 C52 DVM sing 97 n n C62 O62 DVM sing 98 n n C52 O52 DVM sing 99 n n C31 C41 DVM sing 100 n n C31 C21 DVM sing 101 n n O51 C11 DVM sing 102 n n O51 C51 DVM sing 103 n n N21 C21 DVM sing 104 n n O62 C13 DVM sing 105 n n C11 C21 DVM sing 106 n n C41 C51 DVM doub 107 n n N33 C33 DVM sing 108 n n C33 C23 DVM sing 109 n n C33 C43 DVM sing 110 n n C51 C61 DVM sing 111 n n C23 C13 DVM sing 112 n n C13 O53 DVM sing 113 n n C83 C43 DVM sing 114 n n C61 N61 DVM sing 115 n n C43 C53 DVM sing 116 n n C43 O43 DVM sing 117 n n O53 C53 DVM sing 118 n n C13 H1 DVM sing 119 n n N21 H2 DVM sing 120 n n N21 H3 DVM sing 121 n n C22 H5 DVM sing 122 n n C22 H6 DVM sing 123 n n C23 H7 DVM sing 124 n n C42 H8 DVM sing 125 n n CH3 H9 DVM sing 126 n n CH3 H10 DVM sing 127 n n CH3 H11 DVM sing 128 n n C11 H12 DVM sing 129 n n C12 H13 DVM sing 130 n n C21 H14 DVM sing 131 n n C31 H15 DVM sing 132 n n C31 H16 DVM sing 133 n n C32 H17 DVM sing 134 n n C33 H18 DVM sing 135 n n C41 H19 DVM sing 136 n n C52 H22 DVM sing 137 n n C53 H23 DVM sing 138 n n C53 H24 DVM sing 139 n n C61 H25 DVM sing 140 n n C61 H26 DVM sing 141 n n C62 H27 DVM sing 142 n n C83 H28 DVM sing 143 n n C83 H29 DVM sing 144 n n C83 H30 DVM sing 145 n n C93 H31 DVM sing 146 n n C93 H32 DVM sing 147 n n C93 H33 DVM sing 148 n n N12 H34 DVM sing 149 n n N12 H35 DVM sing 150 n n N32 H37 DVM sing 151 n n N33 H38 DVM sing 152 n n N61 H40 DVM sing 153 n n N61 H41 DVM sing 154 n n O23 H43 DVM sing 155 n n O43 H44 DVM sing 156 n n O52 H45 DVM sing 157 n n # _atom_sites.entry_id 6BC2 _atom_sites.fract_transf_matrix[1][1] 0.011847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00679 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011512 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022909 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DVM A 1 301 1 DVM ACS . C 3 MG A 1 302 1 MG MG . D 4 HOH A 1 401 58 HOH HOH . D 4 HOH A 2 402 38 HOH HOH . D 4 HOH A 3 403 10 HOH HOH . D 4 HOH A 4 404 65 HOH HOH . D 4 HOH A 5 405 2 HOH HOH . D 4 HOH A 6 406 29 HOH HOH . D 4 HOH A 7 407 52 HOH HOH . D 4 HOH A 8 408 19 HOH HOH . D 4 HOH A 9 409 45 HOH HOH . D 4 HOH A 10 410 56 HOH HOH . D 4 HOH A 11 411 6 HOH HOH . D 4 HOH A 12 412 3 HOH HOH . D 4 HOH A 13 413 27 HOH HOH . D 4 HOH A 14 414 9 HOH HOH . D 4 HOH A 15 415 26 HOH HOH . D 4 HOH A 16 416 30 HOH HOH . D 4 HOH A 17 417 57 HOH HOH . D 4 HOH A 18 418 21 HOH HOH . D 4 HOH A 19 419 4 HOH HOH . D 4 HOH A 20 420 17 HOH HOH . D 4 HOH A 21 421 28 HOH HOH . D 4 HOH A 22 422 46 HOH HOH . D 4 HOH A 23 423 18 HOH HOH . D 4 HOH A 24 424 7 HOH HOH . D 4 HOH A 25 425 16 HOH HOH . D 4 HOH A 26 426 47 HOH HOH . D 4 HOH A 27 427 54 HOH HOH . D 4 HOH A 28 428 48 HOH HOH . D 4 HOH A 29 429 36 HOH HOH . D 4 HOH A 30 430 22 HOH HOH . D 4 HOH A 31 431 13 HOH HOH . D 4 HOH A 32 432 15 HOH HOH . D 4 HOH A 33 433 39 HOH HOH . D 4 HOH A 34 434 5 HOH HOH . D 4 HOH A 35 435 50 HOH HOH . D 4 HOH A 36 436 25 HOH HOH . D 4 HOH A 37 437 44 HOH HOH . D 4 HOH A 38 438 55 HOH HOH . D 4 HOH A 39 439 41 HOH HOH . D 4 HOH A 40 440 24 HOH HOH . D 4 HOH A 41 441 1 HOH HOH . D 4 HOH A 42 442 49 HOH HOH . D 4 HOH A 43 443 34 HOH HOH . D 4 HOH A 44 444 53 HOH HOH . D 4 HOH A 45 445 14 HOH HOH . D 4 HOH A 46 446 12 HOH HOH . D 4 HOH A 47 447 31 HOH HOH . D 4 HOH A 48 448 20 HOH HOH . D 4 HOH A 49 449 8 HOH HOH . D 4 HOH A 50 450 43 HOH HOH . D 4 HOH A 51 451 37 HOH HOH . D 4 HOH A 52 452 51 HOH HOH . D 4 HOH A 53 453 64 HOH HOH . D 4 HOH A 54 454 32 HOH HOH . D 4 HOH A 55 455 33 HOH HOH . D 4 HOH A 56 456 62 HOH HOH . D 4 HOH A 57 457 59 HOH HOH . D 4 HOH A 58 458 35 HOH HOH . D 4 HOH A 59 459 42 HOH HOH . D 4 HOH A 60 460 61 HOH HOH . D 4 HOH A 61 461 11 HOH HOH . D 4 HOH A 62 462 63 HOH HOH . D 4 HOH A 63 463 40 HOH HOH . D 4 HOH A 64 464 23 HOH HOH . D 4 HOH A 65 465 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 DVM . . . B 2 -20.273 3.18 73.929 0.88 50.84 ? C13 DVM 301 A 1 HETATM 2 N N21 DVM . . . B 2 -15.278 -0.991 72.819 0.88 61.81 ? N21 DVM 301 A 1 HETATM 3 C C22 DVM . . . B 2 -20.648 -0.112 70.67 0.88 50.31 ? C22 DVM 301 A 1 HETATM 4 C C23 DVM . . . B 2 -20.258 4.68 73.64 0.88 50.53 ? C23 DVM 301 A 1 HETATM 5 C C42 DVM . . . B 2 -18.674 -0.933 72.004 0.88 53.95 ? C42 DVM 301 A 1 HETATM 6 C C DVM . . . B 2 -18.686 -2.814 69.119 0.88 51.55 ? C DVM 301 A 1 HETATM 7 O O DVM . . . B 2 -19.008 -3.9 68.614 0.88 50.77 ? O DVM 301 A 1 HETATM 8 C CH3 DVM . . . B 2 -17.354 -2.172 68.862 0.88 53.02 ? CH3 DVM 301 A 1 HETATM 9 C C11 DVM . . . B 2 -17.149 -2.328 73.056 0.88 56.3 ? C11 DVM 301 A 1 HETATM 10 C C12 DVM . . . B 2 -20.447 1.321 71.275 0.88 49.64 ? C12 DVM 301 A 1 HETATM 11 C C21 DVM . . . B 2 -15.862 -2.305 73.332 0.88 57.98 ? C21 DVM 301 A 1 HETATM 12 C C31 DVM . . . B 2 -15.018 -3.578 72.673 0.88 59.34 ? C31 DVM 301 A 1 HETATM 13 C C32 DVM . . . B 2 -19.292 -0.901 70.574 0.88 52.4 ? C32 DVM 301 A 1 HETATM 14 C C33 DVM . . . B 2 -18.836 5.124 73.574 0.88 49.74 ? C33 DVM 301 A 1 HETATM 15 C C41 DVM . . . B 2 -15.475 -4.758 73.16 0.88 59.85 ? C41 DVM 301 A 1 HETATM 16 C C43 DVM . . . B 2 -18.113 4.879 74.855 0.88 51.15 ? C43 DVM 301 A 1 HETATM 17 C C51 DVM . . . B 2 -16.959 -4.584 73.594 0.88 61.31 ? C51 DVM 301 A 1 HETATM 18 C C52 DVM . . . B 2 -18.554 0.489 72.65 0.88 52.41 ? C52 DVM 301 A 1 HETATM 19 C C53 DVM . . . B 2 -18.324 3.455 75.429 0.88 50.77 ? C53 DVM 301 A 1 HETATM 20 C C61 DVM . . . B 2 -17.512 -5.18 74.841 0.88 61.85 ? C61 DVM 301 A 1 HETATM 21 C C62 DVM . . . B 2 -19.83 1.285 72.616 0.88 51.26 ? C62 DVM 301 A 1 HETATM 22 C C83 DVM . . . B 2 -16.584 5.059 74.61 0.88 51.33 ? C83 DVM 301 A 1 HETATM 23 C C93 DVM . . . B 2 -18.188 6.789 71.912 0.88 49.09 ? C93 DVM 301 A 1 HETATM 24 N N12 DVM . . . B 2 -21.765 1.974 71.358 0.88 49.3 ? N12 DVM 301 A 1 HETATM 25 N N32 DVM . . . B 2 -19.629 -2.161 69.988 0.88 49.73 ? N32 DVM 301 A 1 HETATM 26 N N33 DVM . . . B 2 -18.79 6.611 73.238 0.88 49.67 ? N33 DVM 301 A 1 HETATM 27 N N61 DVM . . . B 2 -18.912 -4.725 75.022 0.88 58.46 ? N61 DVM 301 A 1 HETATM 28 O O11 DVM . . . B 2 -17.401 -1.487 71.889 0.88 55.24 ? O11 DVM 301 A 1 HETATM 29 O O23 DVM . . . B 2 -20.875 4.888 72.372 0.88 50.04 ? O23 DVM 301 A 1 HETATM 30 O O43 DVM . . . B 2 -18.545 5.849 75.809 0.88 50.5 ? O43 DVM 301 A 1 HETATM 31 O O51 DVM . . . B 2 -17.748 -3.783 72.766 0.88 57.52 ? O51 DVM 301 A 1 HETATM 32 O O52 DVM . . . B 2 -18.143 0.381 73.991 0.88 51.88 ? O52 DVM 301 A 1 HETATM 33 O O53 DVM . . . B 2 -19.706 2.92 75.277 0.88 50.76 ? O53 DVM 301 A 1 HETATM 34 O O62 DVM . . . B 2 -19.455 2.653 72.988 0.88 51.54 ? O62 DVM 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #