data_6BC5 # _model_server_result.job_id -giN6VaJPHcs0l-e8AtDJQ _model_server_result.datetime_utc '2024-11-27 21:58:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bc5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6BC5 # _exptl.entry_id 6BC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BC5 _cell.length_a 78.068 _cell.length_b 78.068 _cell.length_c 83.278 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 6BC5 _atom_sites.fract_transf_matrix[1][1] 0.012809 _atom_sites.fract_transf_matrix[1][2] 0.007395 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014791 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 301 301 COA COA . C 3 HOH A 1 401 96 HOH HOH . C 3 HOH A 2 402 35 HOH HOH . C 3 HOH A 3 403 40 HOH HOH . C 3 HOH A 4 404 8 HOH HOH . C 3 HOH A 5 405 69 HOH HOH . C 3 HOH A 6 406 25 HOH HOH . C 3 HOH A 7 407 15 HOH HOH . C 3 HOH A 8 408 101 HOH HOH . C 3 HOH A 9 409 80 HOH HOH . C 3 HOH A 10 410 58 HOH HOH . C 3 HOH A 11 411 18 HOH HOH . C 3 HOH A 12 412 14 HOH HOH . C 3 HOH A 13 413 11 HOH HOH . C 3 HOH A 14 414 89 HOH HOH . C 3 HOH A 15 415 81 HOH HOH . C 3 HOH A 16 416 131 HOH HOH . C 3 HOH A 17 417 56 HOH HOH . C 3 HOH A 18 418 12 HOH HOH . C 3 HOH A 19 419 32 HOH HOH . C 3 HOH A 20 420 16 HOH HOH . C 3 HOH A 21 421 104 HOH HOH . C 3 HOH A 22 422 37 HOH HOH . C 3 HOH A 23 423 5 HOH HOH . C 3 HOH A 24 424 21 HOH HOH . C 3 HOH A 25 425 45 HOH HOH . C 3 HOH A 26 426 57 HOH HOH . C 3 HOH A 27 427 116 HOH HOH . C 3 HOH A 28 428 30 HOH HOH . C 3 HOH A 29 429 100 HOH HOH . C 3 HOH A 30 430 7 HOH HOH . C 3 HOH A 31 431 50 HOH HOH . C 3 HOH A 32 432 73 HOH HOH . C 3 HOH A 33 433 74 HOH HOH . C 3 HOH A 34 434 22 HOH HOH . C 3 HOH A 35 435 19 HOH HOH . C 3 HOH A 36 436 20 HOH HOH . C 3 HOH A 37 437 39 HOH HOH . C 3 HOH A 38 438 82 HOH HOH . C 3 HOH A 39 439 87 HOH HOH . C 3 HOH A 40 440 85 HOH HOH . C 3 HOH A 41 441 1 HOH HOH . C 3 HOH A 42 442 23 HOH HOH . C 3 HOH A 43 443 61 HOH HOH . C 3 HOH A 44 444 3 HOH HOH . C 3 HOH A 45 445 122 HOH HOH . C 3 HOH A 46 446 4 HOH HOH . C 3 HOH A 47 447 128 HOH HOH . C 3 HOH A 48 448 33 HOH HOH . C 3 HOH A 49 449 65 HOH HOH . C 3 HOH A 50 450 66 HOH HOH . C 3 HOH A 51 451 103 HOH HOH . C 3 HOH A 52 452 55 HOH HOH . C 3 HOH A 53 453 53 HOH HOH . C 3 HOH A 54 454 72 HOH HOH . C 3 HOH A 55 455 112 HOH HOH . C 3 HOH A 56 456 64 HOH HOH . C 3 HOH A 57 457 31 HOH HOH . C 3 HOH A 58 458 36 HOH HOH . C 3 HOH A 59 459 28 HOH HOH . C 3 HOH A 60 460 124 HOH HOH . C 3 HOH A 61 461 63 HOH HOH . C 3 HOH A 62 462 98 HOH HOH . C 3 HOH A 63 463 44 HOH HOH . C 3 HOH A 64 464 41 HOH HOH . C 3 HOH A 65 465 17 HOH HOH . C 3 HOH A 66 466 2 HOH HOH . C 3 HOH A 67 467 42 HOH HOH . C 3 HOH A 68 468 9 HOH HOH . C 3 HOH A 69 469 78 HOH HOH . C 3 HOH A 70 470 109 HOH HOH . C 3 HOH A 71 471 118 HOH HOH . C 3 HOH A 72 472 76 HOH HOH . C 3 HOH A 73 473 26 HOH HOH . C 3 HOH A 74 474 46 HOH HOH . C 3 HOH A 75 475 10 HOH HOH . C 3 HOH A 76 476 6 HOH HOH . C 3 HOH A 77 477 29 HOH HOH . C 3 HOH A 78 478 75 HOH HOH . C 3 HOH A 79 479 43 HOH HOH . C 3 HOH A 80 480 93 HOH HOH . C 3 HOH A 81 481 48 HOH HOH . C 3 HOH A 82 482 126 HOH HOH . C 3 HOH A 83 483 94 HOH HOH . C 3 HOH A 84 484 115 HOH HOH . C 3 HOH A 85 485 60 HOH HOH . C 3 HOH A 86 486 108 HOH HOH . C 3 HOH A 87 487 88 HOH HOH . C 3 HOH A 88 488 83 HOH HOH . C 3 HOH A 89 489 47 HOH HOH . C 3 HOH A 90 490 13 HOH HOH . C 3 HOH A 91 491 105 HOH HOH . C 3 HOH A 92 492 121 HOH HOH . C 3 HOH A 93 493 114 HOH HOH . C 3 HOH A 94 494 71 HOH HOH . C 3 HOH A 95 495 113 HOH HOH . C 3 HOH A 96 496 86 HOH HOH . C 3 HOH A 97 497 130 HOH HOH . C 3 HOH A 98 498 119 HOH HOH . C 3 HOH A 99 499 107 HOH HOH . C 3 HOH A 100 500 27 HOH HOH . C 3 HOH A 101 501 52 HOH HOH . C 3 HOH A 102 502 92 HOH HOH . C 3 HOH A 103 503 49 HOH HOH . C 3 HOH A 104 504 111 HOH HOH . C 3 HOH A 105 505 79 HOH HOH . C 3 HOH A 106 506 34 HOH HOH . C 3 HOH A 107 507 24 HOH HOH . C 3 HOH A 108 508 77 HOH HOH . C 3 HOH A 109 509 99 HOH HOH . C 3 HOH A 110 510 38 HOH HOH . C 3 HOH A 111 511 54 HOH HOH . C 3 HOH A 112 512 62 HOH HOH . C 3 HOH A 113 513 97 HOH HOH . C 3 HOH A 114 514 67 HOH HOH . C 3 HOH A 115 515 132 HOH HOH . C 3 HOH A 116 516 95 HOH HOH . C 3 HOH A 117 517 84 HOH HOH . C 3 HOH A 118 518 123 HOH HOH . C 3 HOH A 119 519 125 HOH HOH . C 3 HOH A 120 520 110 HOH HOH . C 3 HOH A 121 521 127 HOH HOH . C 3 HOH A 122 522 102 HOH HOH . C 3 HOH A 123 523 120 HOH HOH . C 3 HOH A 124 524 90 HOH HOH . C 3 HOH A 125 525 51 HOH HOH . C 3 HOH A 126 526 106 HOH HOH . C 3 HOH A 127 527 91 HOH HOH . C 3 HOH A 128 528 70 HOH HOH . C 3 HOH A 129 529 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 50.628 47.53 -0.237 1 61.83 ? N1A COA 301 A 1 HETATM 2 C C2A COA . . . B 2 50.143 48.153 0.875 1 60.16 ? C2A COA 301 A 1 HETATM 3 N N3A COA . . . B 2 49.623 47.412 1.901 1 65.89 ? N3A COA 301 A 1 HETATM 4 C C4A COA . . . B 2 49.59 46.051 1.812 1 65.4 ? C4A COA 301 A 1 HETATM 5 C C5A COA . . . B 2 50.063 45.44 0.725 1 60.47 ? C5A COA 301 A 1 HETATM 6 C C6A COA . . . B 2 50.596 46.205 -0.325 1 60.65 ? C6A COA 301 A 1 HETATM 7 N N6A COA . . . B 2 51.155 45.789 -1.571 1 60.34 ? N6A COA 301 A 1 HETATM 8 N N7A COA . . . B 2 49.909 44.11 0.897 1 62.38 ? N7A COA 301 A 1 HETATM 9 C C8A COA . . . B 2 49.338 43.91 2.093 1 69.11 ? C8A COA 301 A 1 HETATM 10 N N9A COA . . . B 2 49.143 45.106 2.662 1 67.62 ? N9A COA 301 A 1 HETATM 11 C C1B COA . . . B 2 48.561 45.444 3.933 1 70.48 ? C1B COA 301 A 1 HETATM 12 C C2B COA . . . B 2 47.566 44.652 4.258 1 72.06 ? C2B COA 301 A 1 HETATM 13 O O2B COA . . . B 2 46.405 44.922 3.459 1 73.11 ? O2B COA 301 A 1 HETATM 14 C C3B COA . . . B 2 47.364 45.129 5.712 1 73.21 ? C3B COA 301 A 1 HETATM 15 O O3B COA . . . B 2 46.913 46.39 5.692 1 75.5 ? O3B COA 301 A 1 HETATM 16 P P3B COA . . . B 2 45.35 46.744 6.253 1 87.85 ? P3B COA 301 A 1 HETATM 17 O O7A COA . . . B 2 45.373 46.844 7.763 1 80.52 ? O7A COA 301 A 1 HETATM 18 O O8A COA . . . B 2 44.369 45.63 5.82 1 78.96 ? O8A COA 301 A 1 HETATM 19 O O9A COA . . . B 2 44.904 48.065 5.669 1 78.17 ? O9A COA 301 A 1 HETATM 20 C C4B COA . . . B 2 48.84 45.129 6.257 1 65.18 ? C4B COA 301 A 1 HETATM 21 O O4B COA . . . B 2 49.601 45.26 5.196 1 66.86 ? O4B COA 301 A 1 HETATM 22 C C5B COA . . . B 2 49.143 43.818 6.964 1 58.84 ? C5B COA 301 A 1 HETATM 23 O O5B COA . . . B 2 50.517 43.54 6.856 1 58.43 ? O5B COA 301 A 1 HETATM 24 P P1A COA . . . B 2 51.142 42.241 7.682 1 59.67 ? P1A COA 301 A 1 HETATM 25 O O1A COA . . . B 2 51.614 41.205 6.698 1 50.34 ? O1A COA 301 A 1 HETATM 26 O O2A COA . . . B 2 52.298 42.698 8.519 1 42.06 ? O2A COA 301 A 1 HETATM 27 O O3A COA . . . B 2 49.971 41.569 8.65 1 57.35 ? O3A COA 301 A 1 HETATM 28 P P2A COA . . . B 2 49.771 41.93 10.301 1 61.44 ? P2A COA 301 A 1 HETATM 29 O O4A COA . . . B 2 48.303 41.791 10.673 1 59.49 ? O4A COA 301 A 1 HETATM 30 O O5A COA . . . B 2 50.242 43.341 10.572 1 52.3 ? O5A COA 301 A 1 HETATM 31 O O6A COA . . . B 2 50.653 40.872 11.217 1 57.42 ? O6A COA 301 A 1 HETATM 32 C CBP COA . . . B 2 51.586 38.675 11.123 1 55.63 ? CBP COA 301 A 1 HETATM 33 C CCP COA . . . B 2 50.304 39.499 11.151 1 56.4 ? CCP COA 301 A 1 HETATM 34 C CDP COA . . . B 2 52.149 38.718 9.737 1 54.18 ? CDP COA 301 A 1 HETATM 35 C CEP COA . . . B 2 51.258 37.245 11.476 1 55.66 ? CEP COA 301 A 1 HETATM 36 C CAP COA . . . B 2 52.589 39.269 12.142 1 56.03 ? CAP COA 301 A 1 HETATM 37 O OAP COA . . . B 2 52.031 39.267 13.391 1 57.19 ? OAP COA 301 A 1 HETATM 38 C C9P COA . . . B 2 53.886 38.409 12.151 1 53.57 ? C9P COA 301 A 1 HETATM 39 O O9P COA . . . B 2 54.022 37.509 12.964 1 56.1 ? O9P COA 301 A 1 HETATM 40 N N8P COA . . . B 2 54.987 38.695 11.145 1 46.12 ? N8P COA 301 A 1 HETATM 41 C C7P COA . . . B 2 56.234 37.827 11.158 1 44.94 ? C7P COA 301 A 1 HETATM 42 C C6P COA . . . B 2 55.819 36.527 10.455 1 46.13 ? C6P COA 301 A 1 HETATM 43 C C5P COA . . . B 2 57.002 35.549 10.319 1 42.98 ? C5P COA 301 A 1 HETATM 44 O O5P COA . . . B 2 58.072 35.939 9.968 1 42.3 ? O5P COA 301 A 1 HETATM 45 N N4P COA . . . B 2 56.791 34.179 10.609 1 49.77 ? N4P COA 301 A 1 HETATM 46 C C3P COA . . . B 2 57.89 33.226 10.486 1 44.97 ? C3P COA 301 A 1 HETATM 47 C C2P COA . . . B 2 57.477 31.876 11.158 1 41.01 ? C2P COA 301 A 1 HETATM 48 S S1P COA . . . B 2 58.833 30.654 10.885 1 56.5 ? S1P COA 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #