data_6BCS # _model_server_result.job_id KQaGhNOSvWc02cSWlI4k2A _model_server_result.datetime_utc '2024-11-26 12:04:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bcs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6BCS # _exptl.entry_id 6BCS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BCS _cell.length_a 57.05 _cell.length_b 57.05 _cell.length_c 101.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BCS _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 26 1_555 A SG CYS 76 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 122 A CYS 122 1_555 A SG CYS 174 A CYS 174 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 122 A CYS 122 1_555 A SG CYS 174 A CYS 174 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 134 A CYS 134 1_555 A SG CYS 144 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 6BCS _atom_sites.fract_transf_matrix[1][1] 0.017528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017528 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BEN A 1 201 1 BEN BEN . C 2 BEN A 1 202 2 BEN BEN . D 2 BEN A 1 203 3 BEN BEN . E 2 BEN A 1 204 4 BEN BEN . F 3 CL A 1 205 2 CL CL . G 3 CL A 1 206 3 CL CL . H 4 DMS A 1 207 1 DMS DMS . I 4 DMS A 1 208 2 DMS DMS . J 5 HOH A 1 301 31 HOH HOH . J 5 HOH A 2 302 45 HOH HOH . J 5 HOH A 3 303 105 HOH HOH . J 5 HOH A 4 304 26 HOH HOH . J 5 HOH A 5 305 50 HOH HOH . J 5 HOH A 6 306 14 HOH HOH . J 5 HOH A 7 307 29 HOH HOH . J 5 HOH A 8 308 81 HOH HOH . J 5 HOH A 9 309 46 HOH HOH . J 5 HOH A 10 310 74 HOH HOH . J 5 HOH A 11 311 24 HOH HOH . J 5 HOH A 12 312 21 HOH HOH . J 5 HOH A 13 313 92 HOH HOH . J 5 HOH A 14 314 55 HOH HOH . J 5 HOH A 15 315 82 HOH HOH . J 5 HOH A 16 316 28 HOH HOH . J 5 HOH A 17 317 83 HOH HOH . J 5 HOH A 18 318 8 HOH HOH . J 5 HOH A 19 319 52 HOH HOH . J 5 HOH A 20 320 59 HOH HOH . J 5 HOH A 21 321 77 HOH HOH . J 5 HOH A 22 322 11 HOH HOH . J 5 HOH A 23 323 17 HOH HOH . J 5 HOH A 24 324 15 HOH HOH . J 5 HOH A 25 325 86 HOH HOH . J 5 HOH A 26 326 39 HOH HOH . J 5 HOH A 27 327 67 HOH HOH . J 5 HOH A 28 328 73 HOH HOH . J 5 HOH A 29 329 2 HOH HOH . J 5 HOH A 30 330 30 HOH HOH . J 5 HOH A 31 331 89 HOH HOH . J 5 HOH A 32 332 18 HOH HOH . J 5 HOH A 33 333 38 HOH HOH . J 5 HOH A 34 334 90 HOH HOH . J 5 HOH A 35 335 80 HOH HOH . J 5 HOH A 36 336 13 HOH HOH . J 5 HOH A 37 337 103 HOH HOH . J 5 HOH A 38 338 37 HOH HOH . J 5 HOH A 39 339 16 HOH HOH . J 5 HOH A 40 340 97 HOH HOH . J 5 HOH A 41 341 32 HOH HOH . J 5 HOH A 42 342 43 HOH HOH . J 5 HOH A 43 343 54 HOH HOH . J 5 HOH A 44 344 78 HOH HOH . J 5 HOH A 45 345 102 HOH HOH . J 5 HOH A 46 346 5 HOH HOH . J 5 HOH A 47 347 72 HOH HOH . J 5 HOH A 48 348 91 HOH HOH . J 5 HOH A 49 349 4 HOH HOH . J 5 HOH A 50 350 101 HOH HOH . J 5 HOH A 51 351 84 HOH HOH . J 5 HOH A 52 352 7 HOH HOH . J 5 HOH A 53 353 1 HOH HOH . J 5 HOH A 54 354 76 HOH HOH . J 5 HOH A 55 355 104 HOH HOH . J 5 HOH A 56 356 93 HOH HOH . J 5 HOH A 57 357 85 HOH HOH . J 5 HOH A 58 358 75 HOH HOH . J 5 HOH A 59 359 48 HOH HOH . J 5 HOH A 60 360 71 HOH HOH . J 5 HOH A 61 361 79 HOH HOH . J 5 HOH A 62 362 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . B 2 -30.962 23.472 8.574 1 26.21 ? C1 BEN 201 A 1 HETATM 2 C C2 BEN . . . B 2 -31.498 24.666 8.122 1 29.69 ? C2 BEN 201 A 1 HETATM 3 C C3 BEN . . . B 2 -30.807 25.87 8.286 1 34.61 ? C3 BEN 201 A 1 HETATM 4 C C4 BEN . . . B 2 -29.57 25.886 8.925 1 22.36 ? C4 BEN 201 A 1 HETATM 5 C C5 BEN . . . B 2 -29.021 24.68 9.377 1 34.26 ? C5 BEN 201 A 1 HETATM 6 C C6 BEN . . . B 2 -29.712 23.482 9.204 1 31.68 ? C6 BEN 201 A 1 HETATM 7 C C BEN . . . B 2 -31.678 22.267 8.404 1 30.23 ? C BEN 201 A 1 HETATM 8 N N1 BEN . . . B 2 -32.393 22.03 7.314 1 30.48 ? N1 BEN 201 A 1 HETATM 9 N N2 BEN . . . B 2 -31.661 21.319 9.331 1 25.22 ? N2 BEN 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #