data_6BCS # _model_server_result.job_id dwHK0NvzQRVNPQh3N1qDOg _model_server_result.datetime_utc '2024-11-22 23:08:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bcs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":207}' # _entry.id 6BCS # _exptl.entry_id 6BCS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BCS _cell.length_a 57.05 _cell.length_b 57.05 _cell.length_c 101.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BCS _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 26 1_555 A SG CYS 76 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 122 A CYS 122 1_555 A SG CYS 174 A CYS 174 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 122 A CYS 122 1_555 A SG CYS 174 A CYS 174 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 134 A CYS 134 1_555 A SG CYS 144 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 100 n n S C1 DMS sing 101 n n S C2 DMS sing 102 n n C1 H11 DMS sing 103 n n C1 H12 DMS sing 104 n n C1 H13 DMS sing 105 n n C2 H21 DMS sing 106 n n C2 H22 DMS sing 107 n n C2 H23 DMS sing 108 n n # _atom_sites.entry_id 6BCS _atom_sites.fract_transf_matrix[1][1] 0.017528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017528 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BEN A 1 201 1 BEN BEN . C 2 BEN A 1 202 2 BEN BEN . D 2 BEN A 1 203 3 BEN BEN . E 2 BEN A 1 204 4 BEN BEN . F 3 CL A 1 205 2 CL CL . G 3 CL A 1 206 3 CL CL . H 4 DMS A 1 207 1 DMS DMS . I 4 DMS A 1 208 2 DMS DMS . J 5 HOH A 1 301 31 HOH HOH . J 5 HOH A 2 302 45 HOH HOH . J 5 HOH A 3 303 105 HOH HOH . J 5 HOH A 4 304 26 HOH HOH . J 5 HOH A 5 305 50 HOH HOH . J 5 HOH A 6 306 14 HOH HOH . J 5 HOH A 7 307 29 HOH HOH . J 5 HOH A 8 308 81 HOH HOH . J 5 HOH A 9 309 46 HOH HOH . J 5 HOH A 10 310 74 HOH HOH . J 5 HOH A 11 311 24 HOH HOH . J 5 HOH A 12 312 21 HOH HOH . J 5 HOH A 13 313 92 HOH HOH . J 5 HOH A 14 314 55 HOH HOH . J 5 HOH A 15 315 82 HOH HOH . J 5 HOH A 16 316 28 HOH HOH . J 5 HOH A 17 317 83 HOH HOH . J 5 HOH A 18 318 8 HOH HOH . J 5 HOH A 19 319 52 HOH HOH . J 5 HOH A 20 320 59 HOH HOH . J 5 HOH A 21 321 77 HOH HOH . J 5 HOH A 22 322 11 HOH HOH . J 5 HOH A 23 323 17 HOH HOH . J 5 HOH A 24 324 15 HOH HOH . J 5 HOH A 25 325 86 HOH HOH . J 5 HOH A 26 326 39 HOH HOH . J 5 HOH A 27 327 67 HOH HOH . J 5 HOH A 28 328 73 HOH HOH . J 5 HOH A 29 329 2 HOH HOH . J 5 HOH A 30 330 30 HOH HOH . J 5 HOH A 31 331 89 HOH HOH . J 5 HOH A 32 332 18 HOH HOH . J 5 HOH A 33 333 38 HOH HOH . J 5 HOH A 34 334 90 HOH HOH . J 5 HOH A 35 335 80 HOH HOH . J 5 HOH A 36 336 13 HOH HOH . J 5 HOH A 37 337 103 HOH HOH . J 5 HOH A 38 338 37 HOH HOH . J 5 HOH A 39 339 16 HOH HOH . J 5 HOH A 40 340 97 HOH HOH . J 5 HOH A 41 341 32 HOH HOH . J 5 HOH A 42 342 43 HOH HOH . J 5 HOH A 43 343 54 HOH HOH . J 5 HOH A 44 344 78 HOH HOH . J 5 HOH A 45 345 102 HOH HOH . J 5 HOH A 46 346 5 HOH HOH . J 5 HOH A 47 347 72 HOH HOH . J 5 HOH A 48 348 91 HOH HOH . J 5 HOH A 49 349 4 HOH HOH . J 5 HOH A 50 350 101 HOH HOH . J 5 HOH A 51 351 84 HOH HOH . J 5 HOH A 52 352 7 HOH HOH . J 5 HOH A 53 353 1 HOH HOH . J 5 HOH A 54 354 76 HOH HOH . J 5 HOH A 55 355 104 HOH HOH . J 5 HOH A 56 356 93 HOH HOH . J 5 HOH A 57 357 85 HOH HOH . J 5 HOH A 58 358 75 HOH HOH . J 5 HOH A 59 359 48 HOH HOH . J 5 HOH A 60 360 71 HOH HOH . J 5 HOH A 61 361 79 HOH HOH . J 5 HOH A 62 362 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . H 4 -34.296 22.816 -0.232 0.39 51.45 ? S DMS 207 A 1 HETATM 2 O O DMS . . . H 4 -34.261 21.316 -0.232 0.39 43.31 ? O DMS 207 A 1 HETATM 3 C C1 DMS . . . H 4 -33.646 23.446 1.345 0.39 30.43 ? C1 DMS 207 A 1 HETATM 4 C C2 DMS . . . H 4 -33.064 23.499 -1.376 0.39 29.57 ? C2 DMS 207 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #