data_6BCU # _model_server_result.job_id 5BcsqXaJdij7yWynjPYvcw _model_server_result.datetime_utc '2025-01-15 10:06:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bcu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":3000}' # _entry.id 6BCU # _exptl.entry_id 6BCU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BCU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BCU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 2343 A ASN 2343 1_555 L MG MG . A MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc2 A OD2 ASP 2357 A ASP 2357 1_555 M MG MG . A MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc3 K O1G ATP . A ATP 3000 1_555 L MG MG . A MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc4 K O1A ATP . A ATP 3000 1_555 L MG MG . A MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc5 K O2G ATP . A ATP 3000 1_555 M MG MG . A MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc6 K O1B ATP . A ATP 3000 1_555 M MG MG . A MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc7 E OG SER 24 S SER 20 1_555 O MG MG . S MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc8 E OG1 THR 42 S THR 38 1_555 O MG MG . S MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc9 N O3G GTP . S GTP 201 1_555 O MG MG . S MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc10 N O1B GTP . S GTP 201 1_555 O MG MG . S MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc11 F OD1 ASN 2343 B ASN 2343 1_555 Q MG MG . B MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc12 F OD2 ASP 2357 B ASP 2357 1_555 R MG MG . B MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc13 P O1G ATP . B ATP 3000 1_555 Q MG MG . B MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc14 P O1A ATP . B ATP 3000 1_555 Q MG MG . B MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc15 P O2G ATP . B ATP 3000 1_555 R MG MG . B MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc16 P O1B ATP . B ATP 3000 1_555 R MG MG . B MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc17 J OG SER 24 R SER 20 1_555 T MG MG . R MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc18 J OG1 THR 42 R THR 38 1_555 T MG MG . R MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc19 S O3G GTP . R GTP 201 1_555 T MG MG . R MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc20 S O1B GTP . R GTP 201 1_555 T MG MG . R MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6BCU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 ATP A 1 3000 3000 ATP ATP . L 7 MG A 1 3001 3001 MG MG . M 7 MG A 1 3002 3002 MG MG . N 8 GTP S 1 201 201 GTP GTP . O 7 MG S 1 202 202 MG MG . P 6 ATP B 1 3000 3000 ATP ATP . Q 7 MG B 1 3001 3001 MG MG . R 7 MG B 1 3002 3002 MG MG . S 8 GTP R 1 201 201 GTP GTP . T 7 MG R 1 202 201 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . K 6 241.21 199.912 268.877 1 91.04 ? PG ATP 3000 A 1 HETATM 2 O O1G ATP . . . K 6 242.218 199.083 268.086 1 70.09 ? O1G ATP 3000 A 1 HETATM 3 O O2G ATP . . . K 6 241.841 200.588 270.098 1 84.67 ? O2G ATP 3000 A 1 HETATM 4 O O3G ATP . . . K 6 239.841 199.273 269.122 1 77.93 ? O3G ATP 3000 A 1 HETATM 5 P PB ATP . . . K 6 240.35 202.555 268.385 1 79.63 ? PB ATP 3000 A 1 HETATM 6 O O1B ATP . . . K 6 240.87 202.765 269.803 1 73.37 ? O1B ATP 3000 A 1 HETATM 7 O O2B ATP . . . K 6 238.872 202.602 268.075 1 76.21 ? O2B ATP 3000 A 1 HETATM 8 O O3B ATP . . . K 6 240.854 201.117 267.856 1 86.31 ? O3B ATP 3000 A 1 HETATM 9 P PA ATP . . . K 6 242.616 203.722 266.994 1 54.92 ? PA ATP 3000 A 1 HETATM 10 O O1A ATP . . . K 6 243.265 202.335 266.999 1 52.1 ? O1A ATP 3000 A 1 HETATM 11 O O2A ATP . . . K 6 243.338 204.895 267.64 1 46.07 ? O2A ATP 3000 A 1 HETATM 12 O O3A ATP . . . K 6 241.069 203.679 267.473 1 68 ? O3A ATP 3000 A 1 HETATM 13 O O5' ATP . . . K 6 242.255 204.151 265.466 1 56.16 ? O5' ATP 3000 A 1 HETATM 14 C C5' ATP . . . K 6 241.563 203.328 264.525 1 54.85 ? C5' ATP 3000 A 1 HETATM 15 C C4' ATP . . . K 6 242.316 203.27 263.188 1 52.25 ? C4' ATP 3000 A 1 HETATM 16 O O4' ATP . . . K 6 242.572 204.618 262.702 1 42.34 ? O4' ATP 3000 A 1 HETATM 17 C C3' ATP . . . K 6 243.657 202.477 263.32 1 51.93 ? C3' ATP 3000 A 1 HETATM 18 O O3' ATP . . . K 6 243.462 201.121 262.895 1 53.73 ? O3' ATP 3000 A 1 HETATM 19 C C2' ATP . . . K 6 244.562 203.323 262.396 1 46.45 ? C2' ATP 3000 A 1 HETATM 20 O O2' ATP . . . K 6 244.701 202.803 261.09 1 46.36 ? O2' ATP 3000 A 1 HETATM 21 C C1' ATP . . . K 6 243.872 204.723 262.245 1 39.08 ? C1' ATP 3000 A 1 HETATM 22 N N9 ATP . . . K 6 244.632 205.695 263.067 1 35.16 ? N9 ATP 3000 A 1 HETATM 23 C C8 ATP . . . K 6 244.648 205.881 264.418 1 33.39 ? C8 ATP 3000 A 1 HETATM 24 N N7 ATP . . . K 6 245.496 206.854 264.853 1 32.29 ? N7 ATP 3000 A 1 HETATM 25 C C5 ATP . . . K 6 246.066 207.316 263.754 1 33.24 ? C5 ATP 3000 A 1 HETATM 26 C C6 ATP . . . K 6 247.085 208.355 263.504 1 31.62 ? C6 ATP 3000 A 1 HETATM 27 N N6 ATP . . . K 6 247.645 209.086 264.542 1 29.18 ? N6 ATP 3000 A 1 HETATM 28 N N1 ATP . . . K 6 247.402 208.498 262.19 1 33.08 ? N1 ATP 3000 A 1 HETATM 29 C C2 ATP . . . K 6 246.845 207.735 261.158 1 34.12 ? C2 ATP 3000 A 1 HETATM 30 N N3 ATP . . . K 6 245.909 206.789 261.325 1 32.98 ? N3 ATP 3000 A 1 HETATM 31 C C4 ATP . . . K 6 245.492 206.547 262.579 1 33.52 ? C4 ATP 3000 A 1 HETATM 32 H "H5'1" ATP . . . K 6 240.563 203.75 264.347 1 54.65 ? "H5'1" ATP 3000 A 1 HETATM 33 H "H5'2" ATP . . . K 6 241.446 202.314 264.935 1 54.65 ? "H5'2" ATP 3000 A 1 HETATM 34 H H4' ATP . . . K 6 241.669 202.748 262.451 1 50.98 ? H4' ATP 3000 A 1 HETATM 35 H H3' ATP . . . K 6 244.025 202.499 264.346 1 51.19 ? H3' ATP 3000 A 1 HETATM 36 H HO3' ATP . . . K 6 244.209 200.994 262.034 0 90 ? HO3' ATP 3000 A 1 HETATM 37 H H2' ATP . . . K 6 245.559 203.411 262.876 1 45.42 ? H2' ATP 3000 A 1 HETATM 38 H HO2' ATP . . . K 6 244.699 202.451 260.435 0 90 ? HO2' ATP 3000 A 1 HETATM 39 H H1' ATP . . . K 6 243.798 205.075 261.161 1 39.77 ? H1' ATP 3000 A 1 HETATM 40 H H8 ATP . . . K 6 244.057 205.337 265.09 1 33.34 ? H8 ATP 3000 A 1 HETATM 41 H HN61 ATP . . . K 6 247.361 208.941 265.505 1 29.64 ? HN61 ATP 3000 A 1 HETATM 42 H HN62 ATP . . . K 6 248.341 209.802 264.366 1 29.62 ? HN62 ATP 3000 A 1 HETATM 43 H H2 ATP . . . K 6 247.152 207.933 260.153 1 33.58 ? H2 ATP 3000 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 165 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #