data_6BCU # _model_server_result.job_id KQheJY7M4FapTsfa14GaFw _model_server_result.datetime_utc '2025-01-15 10:16:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bcu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":3000}' # _entry.id 6BCU # _exptl.entry_id 6BCU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BCU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BCU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 2343 A ASN 2343 1_555 L MG MG . A MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc2 A OD2 ASP 2357 A ASP 2357 1_555 M MG MG . A MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc3 K O1G ATP . A ATP 3000 1_555 L MG MG . A MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc4 K O1A ATP . A ATP 3000 1_555 L MG MG . A MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc5 K O2G ATP . A ATP 3000 1_555 M MG MG . A MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc6 K O1B ATP . A ATP 3000 1_555 M MG MG . A MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc7 E OG SER 24 S SER 20 1_555 O MG MG . S MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc8 E OG1 THR 42 S THR 38 1_555 O MG MG . S MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc9 N O3G GTP . S GTP 201 1_555 O MG MG . S MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc10 N O1B GTP . S GTP 201 1_555 O MG MG . S MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc11 F OD1 ASN 2343 B ASN 2343 1_555 Q MG MG . B MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc12 F OD2 ASP 2357 B ASP 2357 1_555 R MG MG . B MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc13 P O1G ATP . B ATP 3000 1_555 Q MG MG . B MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc14 P O1A ATP . B ATP 3000 1_555 Q MG MG . B MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc15 P O2G ATP . B ATP 3000 1_555 R MG MG . B MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc16 P O1B ATP . B ATP 3000 1_555 R MG MG . B MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc17 J OG SER 24 R SER 20 1_555 T MG MG . R MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc18 J OG1 THR 42 R THR 38 1_555 T MG MG . R MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc19 S O3G GTP . R GTP 201 1_555 T MG MG . R MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc20 S O1B GTP . R GTP 201 1_555 T MG MG . R MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6BCU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 ATP A 1 3000 3000 ATP ATP . L 7 MG A 1 3001 3001 MG MG . M 7 MG A 1 3002 3002 MG MG . N 8 GTP S 1 201 201 GTP GTP . O 7 MG S 1 202 202 MG MG . P 6 ATP B 1 3000 3000 ATP ATP . Q 7 MG B 1 3001 3001 MG MG . R 7 MG B 1 3002 3002 MG MG . S 8 GTP R 1 201 201 GTP GTP . T 7 MG R 1 202 201 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . P 6 256.41 297.684 268.879 1 88.43 ? PG ATP 3000 B 1 HETATM 2 O O1G ATP . . . P 6 255.397 298.509 268.087 1 67.14 ? O1G ATP 3000 B 1 HETATM 3 O O2G ATP . . . P 6 255.786 297.02 270.11 1 81.75 ? O2G ATP 3000 B 1 HETATM 4 O O3G ATP . . . P 6 257.779 298.325 269.113 1 75.39 ? O3G ATP 3000 B 1 HETATM 5 P PB ATP . . . P 6 257.203 295.014 268.382 1 78.29 ? PB ATP 3000 B 1 HETATM 6 O O1B ATP . . . P 6 256.615 294.787 269.773 1 71.26 ? O1B ATP 3000 B 1 HETATM 7 O O2B ATP . . . P 6 258.691 294.949 268.132 1 74.26 ? O2B ATP 3000 B 1 HETATM 8 O O3B ATP . . . P 6 256.758 296.475 267.861 1 84.12 ? O3B ATP 3000 B 1 HETATM 9 P PA ATP . . . P 6 254.941 293.893 266.989 1 56.55 ? PA ATP 3000 B 1 HETATM 10 O O1A ATP . . . P 6 254.307 295.29 267.022 1 53.35 ? O1A ATP 3000 B 1 HETATM 11 O O2A ATP . . . P 6 254.248 292.729 267.681 1 47.24 ? O2A ATP 3000 B 1 HETATM 12 O O3A ATP . . . P 6 256.509 293.944 267.389 1 67.71 ? O3A ATP 3000 B 1 HETATM 13 O O5' ATP . . . P 6 255.173 293.451 265.447 1 57.87 ? O5' ATP 3000 B 1 HETATM 14 C C5' ATP . . . P 6 255.906 294.204 264.475 1 55.81 ? C5' ATP 3000 B 1 HETATM 15 C C4' ATP . . . P 6 255.143 294.295 263.164 1 53.44 ? C4' ATP 3000 B 1 HETATM 16 O O4' ATP . . . P 6 254.952 292.969 262.696 1 43.6 ? O4' ATP 3000 B 1 HETATM 17 C C3' ATP . . . P 6 253.819 295.107 263.301 1 55.57 ? C3' ATP 3000 B 1 HETATM 18 O O3' ATP . . . P 6 254.054 296.417 262.8 1 57.97 ? O3' ATP 3000 B 1 HETATM 19 C C2' ATP . . . P 6 252.908 294.163 262.426 1 50.82 ? C2' ATP 3000 B 1 HETATM 20 O O2' ATP . . . P 6 252.729 294.694 261.119 1 51.53 ? O2' ATP 3000 B 1 HETATM 21 C C1' ATP . . . P 6 253.65 292.792 262.281 1 40.9 ? C1' ATP 3000 B 1 HETATM 22 N N9 ATP . . . P 6 252.917 291.772 263.092 1 36.09 ? N9 ATP 3000 B 1 HETATM 23 C C8 ATP . . . P 6 252.945 291.541 264.447 1 34.22 ? C8 ATP 3000 B 1 HETATM 24 N N7 ATP . . . P 6 252.102 290.546 264.845 1 33.2 ? N7 ATP 3000 B 1 HETATM 25 C C5 ATP . . . P 6 251.499 290.125 263.729 1 34.36 ? C5 ATP 3000 B 1 HETATM 26 C C6 ATP . . . P 6 250.46 289.094 263.452 1 34.32 ? C6 ATP 3000 B 1 HETATM 27 N N6 ATP . . . P 6 249.908 288.347 264.508 1 32.44 ? N6 ATP 3000 B 1 HETATM 28 N N1 ATP . . . P 6 250.103 288.947 262.126 1 35.44 ? N1 ATP 3000 B 1 HETATM 29 C C2 ATP . . . P 6 250.636 289.721 261.123 1 35.85 ? C2 ATP 3000 B 1 HETATM 30 N N3 ATP . . . P 6 251.581 290.71 261.319 1 33.5 ? N3 ATP 3000 B 1 HETATM 31 C C4 ATP . . . P 6 252.039 290.937 262.578 1 33.96 ? C4 ATP 3000 B 1 HETATM 32 H "H5'1" ATP . . . P 6 256.862 293.697 264.272 1 55.79 ? "H5'1" ATP 3000 B 1 HETATM 33 H "H5'2" ATP . . . P 6 256.12 295.21 264.864 1 55.79 ? "H5'2" ATP 3000 B 1 HETATM 34 H H4' ATP . . . P 6 255.821 294.773 262.398 1 52.51 ? H4' ATP 3000 B 1 HETATM 35 H H3' ATP . . . P 6 253.479 295.165 264.344 1 54.77 ? H3' ATP 3000 B 1 HETATM 36 H HO3' ATP . . . P 6 253.411 296.388 261.621 0 90 ? HO3' ATP 3000 B 1 HETATM 37 H H2' ATP . . . P 6 251.929 294.064 262.924 1 49.44 ? H2' ATP 3000 B 1 HETATM 38 H HO2' ATP . . . P 6 252.712 294.857 260.317 0 90 ? HO2' ATP 3000 B 1 HETATM 39 H H1' ATP . . . P 6 253.716 292.466 261.206 1 41.86 ? H1' ATP 3000 B 1 HETATM 40 H H8 ATP . . . P 6 253.559 292.083 265.153 1 34.58 ? H8 ATP 3000 B 1 HETATM 41 H HN61 ATP . . . P 6 250.227 288.485 265.475 1 33.06 ? HN61 ATP 3000 B 1 HETATM 42 H HN62 ATP . . . P 6 249.185 287.664 264.348 1 33.06 ? HN62 ATP 3000 B 1 HETATM 43 H H2 ATP . . . P 6 250.299 289.499 260.098 1 35.55 ? H2 ATP 3000 B 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 384 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 43 #