data_6BCX
#
_model_server_result.job_id            Imp_N6hOYMmYgjRVSxdQnA 
_model_server_result.datetime_utc      '2025-01-15 06:04:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bcx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":3000}' 
#
_entry.id    6BCX 
#
_exptl.entry_id    6BCX 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6BCX 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BCX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 2190 A GLU 2190 1_555 K MG MG . A MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? 
metalc ? metalc2 A OD1 ASN 2343 A ASN 2343 1_555 J MG MG . A MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? 
metalc ? metalc3 I O1G ATP . A ATP 3000 1_555 J MG MG . A MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc4 I O1A ATP . A ATP 3000 1_555 J MG MG . A MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? 
metalc ? metalc5 I O2G ATP . A ATP 3000 1_555 K MG MG . A MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc6 E OE2 GLU 2190 B GLU 2190 1_555 N MG MG . B MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? 
metalc ? metalc7 E OD1 ASN 2343 B ASN 2343 1_555 M MG MG . B MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? 
metalc ? metalc8 L O1G ATP . B ATP 3000 1_555 M MG MG . B MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc9 L O1A ATP . B ATP 3000 1_555 M MG MG . B MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc10 L O2G ATP . B ATP 3000 1_555 N MG MG . B MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6BCX 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 ATP A 1 3000 3000 ATP ATP . 
J 6 MG A 1 3001 3001 MG MG . 
K 6 MG A 1 3002 3002 MG MG . 
L 5 ATP B 1 3000 3000 ATP ATP . 
M 6 MG B 1 3001 3001 MG MG . 
N 6 MG B 1 3002 3002 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . I 5 240.002 200.58 268.845 1 71.69 ? PG ATP 3000 A 1 
HETATM 2 O O1G ATP . . . I 5 241.059 200.484 267.759 1 54.03 ? O1G ATP 3000 A 1 
HETATM 3 O O2G ATP . . . I 5 240.527 201.151 270.149 1 73.51 ? O2G ATP 3000 A 1 
HETATM 4 O O3G ATP . . . I 5 239.158 199.329 268.995 1 75.09 ? O3G ATP 3000 A 1 
HETATM 5 P PB ATP . . . I 5 238.651 202.152 266.874 1 64.16 ? PB ATP 3000 A 1 
HETATM 6 O O1B ATP . . . I 5 237.238 202.701 266.819 1 33.23 ? O1B ATP 3000 A 1 
HETATM 7 O O2B ATP . . . I 5 239.029 201.004 265.954 1 37.03 ? O2B ATP 3000 A 1 
HETATM 8 O O3B ATP . . . I 5 238.931 201.705 268.399 1 70.57 ? O3B ATP 3000 A 1 
HETATM 9 P PA ATP . . . I 5 240.974 203.547 265.817 1 35.88 ? PA ATP 3000 A 1 
HETATM 10 O O1A ATP . . . I 5 241.489 202.167 265.468 1 35.55 ? O1A ATP 3000 A 1 
HETATM 11 O O2A ATP . . . I 5 241.943 204.544 266.429 1 33.51 ? O2A ATP 3000 A 1 
HETATM 12 O O3A ATP . . . I 5 239.678 203.408 266.783 1 47.31 ? O3A ATP 3000 A 1 
HETATM 13 O O5' ATP . . . I 5 240.357 204.232 264.484 1 28.75 ? O5' ATP 3000 A 1 
HETATM 14 C C5' ATP . . . I 5 239.611 203.505 263.499 1 27.58 ? C5' ATP 3000 A 1 
HETATM 15 C C4' ATP . . . I 5 240.35 203.492 262.157 1 43.16 ? C4' ATP 3000 A 1 
HETATM 16 O O4' ATP . . . I 5 240.723 204.826 261.778 1 37.11 ? O4' ATP 3000 A 1 
HETATM 17 C C3' ATP . . . I 5 241.649 202.671 262.15 1 51.56 ? C3' ATP 3000 A 1 
HETATM 18 O O3' ATP . . . I 5 241.428 201.291 261.804 1 50.35 ? O3' ATP 3000 A 1 
HETATM 19 C C2' ATP . . . I 5 242.539 203.397 261.155 1 35.32 ? C2' ATP 3000 A 1 
HETATM 20 O O2' ATP . . . I 5 242.429 202.864 259.826 1 47.71 ? O2' ATP 3000 A 1 
HETATM 21 C C1' ATP . . . I 5 242.016 204.826 261.157 1 31.46 ? C1' ATP 3000 A 1 
HETATM 22 N N9 ATP . . . I 5 242.95 205.708 261.907 1 24.59 ? N9 ATP 3000 A 1 
HETATM 23 C C8 ATP . . . I 5 243.248 205.659 263.221 1 18.46 ? C8 ATP 3000 A 1 
HETATM 24 N N7 ATP . . . I 5 244.141 206.632 263.542 1 24.07 ? N7 ATP 3000 A 1 
HETATM 25 C C5 ATP . . . I 5 244.42 207.319 262.412 1 30.75 ? C5 ATP 3000 A 1 
HETATM 26 C C6 ATP . . . I 5 245.282 208.475 262.016 1 29.58 ? C6 ATP 3000 A 1 
HETATM 27 N N6 ATP . . . I 5 246.048 209.116 262.937 1 18.02 ? N6 ATP 3000 A 1 
HETATM 28 N N1 ATP . . . I 5 245.262 208.859 260.706 1 25.75 ? N1 ATP 3000 A 1 
HETATM 29 C C2 ATP . . . I 5 244.489 208.23 259.775 1 19.01 ? C2 ATP 3000 A 1 
HETATM 30 N N3 ATP . . . I 5 243.698 207.187 260.073 1 22.28 ? N3 ATP 3000 A 1 
HETATM 31 C C4 ATP . . . I 5 243.629 206.697 261.34 1 27.98 ? C4 ATP 3000 A 1 
HETATM 32 H "H5'1" ATP . . . I 5 238.634 203.976 263.368 1 31.08 ? "H5'1" ATP 3000 A 1 
HETATM 33 H "H5'2" ATP . . . I 5 239.443 202.478 263.826 1 31.1 ? "H5'2" ATP 3000 A 1 
HETATM 34 H H4' ATP . . . I 5 239.673 203.072 261.398 1 39.25 ? H4' ATP 3000 A 1 
HETATM 35 H H3' ATP . . . I 5 242.13 202.739 263.132 1 45.99 ? H3' ATP 3000 A 1 
HETATM 36 H HO3' ATP . . . I 5 242.023 200.877 261.466 0 90 ? HO3' ATP 3000 A 1 
HETATM 37 H H2' ATP . . . I 5 243.58 203.367 261.513 1 39.33 ? H2' ATP 3000 A 1 
HETATM 38 H HO2' ATP . . . I 5 242.739 202.118 259.757 0 90 ? HO2' ATP 3000 A 1 
HETATM 39 H H1' ATP . . . I 5 241.918 205.168 260.117 1 31.64 ? H1' ATP 3000 A 1 
HETATM 40 H H8 ATP . . . I 5 242.846 204.938 263.925 1 21.02 ? H8 ATP 3000 A 1 
HETATM 41 H HN61 ATP . . . I 5 246.038 208.803 263.899 1 21.41 ? HN61 ATP 3000 A 1 
HETATM 42 H HN62 ATP . . . I 5 246.621 209.898 262.665 1 21.36 ? HN62 ATP 3000 A 1 
HETATM 43 H H2 ATP . . . I 5 244.497 208.587 258.749 1 21.51 ? H2 ATP 3000 A 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    488 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#