data_6BCX
#
_model_server_result.job_id            5I6D4jTrhuLHxENRN1krfw 
_model_server_result.datetime_utc      '2025-01-15 06:24:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bcx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":3000}' 
#
_entry.id    6BCX 
#
_exptl.entry_id    6BCX 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6BCX 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BCX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 2190 A GLU 2190 1_555 K MG MG . A MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? 
metalc ? metalc2 A OD1 ASN 2343 A ASN 2343 1_555 J MG MG . A MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? 
metalc ? metalc3 I O1G ATP . A ATP 3000 1_555 J MG MG . A MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc4 I O1A ATP . A ATP 3000 1_555 J MG MG . A MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? 
metalc ? metalc5 I O2G ATP . A ATP 3000 1_555 K MG MG . A MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc6 E OE2 GLU 2190 B GLU 2190 1_555 N MG MG . B MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? 
metalc ? metalc7 E OD1 ASN 2343 B ASN 2343 1_555 M MG MG . B MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? 
metalc ? metalc8 L O1G ATP . B ATP 3000 1_555 M MG MG . B MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc9 L O1A ATP . B ATP 3000 1_555 M MG MG . B MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc10 L O2G ATP . B ATP 3000 1_555 N MG MG . B MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6BCX 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 ATP A 1 3000 3000 ATP ATP . 
J 6 MG A 1 3001 3001 MG MG . 
K 6 MG A 1 3002 3002 MG MG . 
L 5 ATP B 1 3000 3000 ATP ATP . 
M 6 MG B 1 3001 3001 MG MG . 
N 6 MG B 1 3002 3002 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . L 5 257.691 297.113 268.833 1 74.05 ? PG ATP 3000 B 1 
HETATM 2 O O1G ATP . . . L 5 256.588 297.219 267.794 1 55.16 ? O1G ATP 3000 B 1 
HETATM 3 O O2G ATP . . . L 5 257.205 296.68 270.202 1 75.65 ? O2G ATP 3000 B 1 
HETATM 4 O O3G ATP . . . L 5 258.654 298.283 268.841 1 80.76 ? O3G ATP 3000 B 1 
HETATM 5 P PB ATP . . . L 5 259 295.487 266.886 1 66.6 ? PB ATP 3000 B 1 
HETATM 6 O O1B ATP . . . L 5 260.433 294.995 266.888 1 34.25 ? O1B ATP 3000 B 1 
HETATM 7 O O2B ATP . . . L 5 258.629 296.639 265.969 1 38.68 ? O2B ATP 3000 B 1 
HETATM 8 O O3B ATP . . . L 5 258.62 295.865 268.407 1 71.64 ? O3B ATP 3000 B 1 
HETATM 9 P PA ATP . . . L 5 256.689 294.109 265.801 1 36.34 ? PA ATP 3000 B 1 
HETATM 10 O O1A ATP . . . L 5 256.2 295.505 265.477 1 35.91 ? O1A ATP 3000 B 1 
HETATM 11 O O2A ATP . . . L 5 255.712 293.138 266.439 1 33.11 ? O2A ATP 3000 B 1 
HETATM 12 O O3A ATP . . . L 5 258.031 294.197 266.706 1 49.14 ? O3A ATP 3000 B 1 
HETATM 13 O O5' ATP . . . L 5 257.247 293.417 264.447 1 28.98 ? O5' ATP 3000 B 1 
HETATM 14 C C5' ATP . . . L 5 258.008 294.123 263.46 1 26.39 ? C5' ATP 3000 B 1 
HETATM 15 C C4' ATP . . . L 5 257.272 294.115 262.116 1 42.27 ? C4' ATP 3000 B 1 
HETATM 16 O O4' ATP . . . L 5 256.848 292.784 261.787 1 35.79 ? O4' ATP 3000 B 1 
HETATM 17 C C3' ATP . . . L 5 256.012 294.991 262.082 1 49.22 ? C3' ATP 3000 B 1 
HETATM 18 O O3' ATP . . . L 5 256.301 296.312 261.589 1 48.91 ? O3' ATP 3000 B 1 
HETATM 19 C C2' ATP . . . L 5 255.024 294.228 261.208 1 34.58 ? C2' ATP 3000 B 1 
HETATM 20 O O2' ATP . . . L 5 254.991 294.702 259.854 1 47.45 ? O2' ATP 3000 B 1 
HETATM 21 C C1' ATP . . . L 5 255.538 292.796 261.204 1 30.72 ? C1' ATP 3000 B 1 
HETATM 22 N N9 ATP . . . L 5 254.62 291.906 261.966 1 23.16 ? N9 ATP 3000 B 1 
HETATM 23 C C8 ATP . . . L 5 254.319 291.945 263.287 1 18.55 ? C8 ATP 3000 B 1 
HETATM 24 N N7 ATP . . . L 5 253.444 290.949 263.602 1 27.12 ? N7 ATP 3000 B 1 
HETATM 25 C C5 ATP . . . L 5 253.165 290.267 262.467 1 34.34 ? C5 ATP 3000 B 1 
HETATM 26 C C6 ATP . . . L 5 252.318 289.101 262.063 1 29.71 ? C6 ATP 3000 B 1 
HETATM 27 N N6 ATP . . . L 5 251.554 288.437 262.983 1 19.23 ? N6 ATP 3000 B 1 
HETATM 28 N N1 ATP . . . L 5 252.35 288.724 260.748 1 28.23 ? N1 ATP 3000 B 1 
HETATM 29 C C2 ATP . . . L 5 253.108 289.374 259.818 1 18.25 ? C2 ATP 3000 B 1 
HETATM 30 N N3 ATP . . . L 5 253.884 290.426 260.122 1 20.66 ? N3 ATP 3000 B 1 
HETATM 31 C C4 ATP . . . L 5 253.951 290.908 261.395 1 26.08 ? C4 ATP 3000 B 1 
HETATM 32 H "H5'1" ATP . . . L 5 258.981 293.642 263.341 1 30.29 ? "H5'1" ATP 3000 B 1 
HETATM 33 H "H5'2" ATP . . . L 5 258.182 295.155 263.774 1 30.32 ? "H5'2" ATP 3000 B 1 
HETATM 34 H H4' ATP . . . L 5 257.966 294.479 261.343 1 38.17 ? H4' ATP 3000 B 1 
HETATM 35 H H3' ATP . . . L 5 255.589 295.054 263.091 1 44.66 ? H3' ATP 3000 B 1 
HETATM 36 H HO3' ATP . . . L 5 255.473 296.717 261.438 0 90 ? HO3' ATP 3000 B 1 
HETATM 37 H H2' ATP . . . L 5 254.019 294.275 261.659 1 38.46 ? H2' ATP 3000 B 1 
HETATM 38 H HO2' ATP . . . L 5 254.704 295.443 259.79 0 90 ? HO2' ATP 3000 B 1 
HETATM 39 H H1' ATP . . . L 5 255.615 292.456 260.161 1 30.69 ? H1' ATP 3000 B 1 
HETATM 40 H H8 ATP . . . L 5 254.719 292.663 263.997 1 21.04 ? H8 ATP 3000 B 1 
HETATM 41 H HN61 ATP . . . L 5 251.556 288.733 263.951 1 22.3 ? HN61 ATP 3000 B 1 
HETATM 42 H HN62 ATP . . . L 5 250.983 287.653 262.705 1 22.27 ? HN62 ATP 3000 B 1 
HETATM 43 H H2 ATP . . . L 5 253.096 289.029 258.789 1 21.32 ? H2 ATP 3000 B 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    510 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#