data_6BCZ # _model_server_result.job_id kzjhdZu8PSuHpZCggyhefg _model_server_result.datetime_utc '2024-11-14 19:00:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bcz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6BCZ # _exptl.entry_id 6BCZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BCZ _cell.length_a 77.369 _cell.length_b 101.16 _cell.length_c 128.09 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BCZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -101.16 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -101.16 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N26 D7Y . A D7Y 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 188 n n CHA C4D HEM doub 189 n n CHA HHA HEM sing 190 n n CHB C4A HEM sing 191 n n CHB C1B HEM doub 192 n n CHB HHB HEM sing 193 n n CHC C4B HEM sing 194 n n CHC C1C HEM doub 195 n n CHC HHC HEM sing 196 n n CHD C4C HEM doub 197 n n CHD C1D HEM sing 198 n n CHD HHD HEM sing 199 n n C1A C2A HEM doub 200 n y C1A NA HEM sing 201 n y C2A C3A HEM sing 202 n y C2A CAA HEM sing 203 n n C3A C4A HEM doub 204 n y C3A CMA HEM sing 205 n n C4A NA HEM sing 206 n y CMA HMA HEM sing 207 n n CMA HMAA HEM sing 208 n n CMA HMAB HEM sing 209 n n CAA CBA HEM sing 210 n n CAA HAA HEM sing 211 n n CAA HAAA HEM sing 212 n n CBA CGA HEM sing 213 n n CBA HBA HEM sing 214 n n CBA HBAA HEM sing 215 n n CGA O1A HEM doub 216 n n CGA O2A HEM sing 217 n n C1B C2B HEM sing 218 n n C1B NB HEM sing 219 n n C2B C3B HEM doub 220 n n C2B CMB HEM sing 221 n n C3B C4B HEM sing 222 n n C3B CAB HEM sing 223 n n C4B NB HEM doub 224 n n CMB HMB HEM sing 225 n n CMB HMBA HEM sing 226 n n CMB HMBB HEM sing 227 n n CAB CBB HEM doub 228 n n CAB HAB HEM sing 229 n n CBB HBB HEM sing 230 n n CBB HBBA HEM sing 231 n n C1C C2C HEM sing 232 n y C1C NC HEM sing 233 n y C2C C3C HEM doub 234 n y C2C CMC HEM sing 235 n n C3C C4C HEM sing 236 n y C3C CAC HEM sing 237 n n C4C NC HEM sing 238 n y CMC HMC HEM sing 239 n n CMC HMCA HEM sing 240 n n CMC HMCB HEM sing 241 n n CAC CBC HEM doub 242 n n CAC HAC HEM sing 243 n n CBC HBC HEM sing 244 n n CBC HBCA HEM sing 245 n n C1D C2D HEM sing 246 n n C1D ND HEM doub 247 n n C2D C3D HEM doub 248 n n C2D CMD HEM sing 249 n n C3D C4D HEM sing 250 n n C3D CAD HEM sing 251 n n C4D ND HEM sing 252 n n CMD HMD HEM sing 253 n n CMD HMDA HEM sing 254 n n CMD HMDB HEM sing 255 n n CAD CBD HEM sing 256 n n CAD HAD HEM sing 257 n n CAD HADA HEM sing 258 n n CBD CGD HEM sing 259 n n CBD HBD HEM sing 260 n n CBD HBDA HEM sing 261 n n CGD O1D HEM doub 262 n n CGD O2D HEM sing 263 n n O2A H2A HEM sing 264 n n O2D H2D HEM sing 265 n n FE NA HEM sing 266 n n FE NB HEM sing 267 n n FE NC HEM sing 268 n n FE ND HEM sing 269 n n # _atom_sites.entry_id 6BCZ _atom_sites.fract_transf_matrix[1][1] 0.012925 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007807 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 D7Y A 1 602 700 D7Y 61A . D 4 HOH A 1 701 3 HOH HOH . D 4 HOH A 2 702 11 HOH HOH . D 4 HOH A 3 703 6 HOH HOH . D 4 HOH A 4 704 8 HOH HOH . D 4 HOH A 5 705 2 HOH HOH . D 4 HOH A 6 706 1 HOH HOH . D 4 HOH A 7 707 5 HOH HOH . D 4 HOH A 8 708 9 HOH HOH . D 4 HOH A 9 709 4 HOH HOH . D 4 HOH A 10 710 7 HOH HOH . D 4 HOH A 11 711 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -23.315 -30.842 -9.64 1 60.52 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 -22.707 -28.047 -13.612 1 60.79 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 -22.018 -24.241 -10.806 1 58.36 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 -23.039 -26.848 -6.886 1 55.41 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 -23.16 -30.372 -10.929 1 64.01 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 -23.199 -31.209 -12.097 1 63.2 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 -23.066 -30.443 -13.168 1 61.44 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 -22.908 -29.091 -12.732 1 53.73 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 -23.06 -30.919 -14.635 1 56.62 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 -23.408 -32.726 -12.113 1 58.16 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 -24.922 -32.904 -12.185 1 72.58 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 -25.291 -34.346 -12.409 1 76.71 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 -26.352 -34.585 -13.057 1 70.79 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 -24.535 -35.252 -11.96 1 67.74 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 -22.436 -26.756 -13.243 1 60.5 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 -22.154 -25.602 -14.093 1 68.75 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 -21.968 -24.557 -13.275 1 62.41 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 -22.132 -25.029 -11.924 1 52.84 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 -22.096 -25.616 -15.646 1 64.11 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 -21.622 -23.068 -13.524 1 67.75 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 -21.535 -22.471 -14.717 1 78.86 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 -22.318 -24.605 -9.518 1 55.02 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 -22.48 -23.681 -8.426 1 65.9 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 -22.778 -24.36 -7.338 1 62.98 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 -22.816 -25.772 -7.694 1 65.52 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 -22.356 -22.143 -8.477 1 56.3 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 -22.986 -23.61 -6.011 1 71.97 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 -23.683 -24.161 -5.036 1 79.05 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 -23.18 -28.164 -7.255 1 58.99 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 -23.424 -29.246 -6.32 1 60.18 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 -23.517 -30.513 -7.166 1 59.66 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 -23.317 -30.039 -8.522 1 64.76 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 -23.558 -29.056 -4.796 1 62.98 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 -23.782 -31.992 -6.772 1 53.31 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 -25.303 -32.154 -6.634 1 60.6 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 -25.684 -33.394 -5.846 1 67.16 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 -26.768 -33.428 -5.186 1 67.29 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 -24.902 -34.363 -5.874 1 79.06 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 -22.968 -29.078 -11.347 1 60.91 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 -22.424 -26.367 -11.938 1 55.45 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 -22.511 -25.883 -9.035 1 58.03 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 -23.135 -28.668 -8.539 1 56.52 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 -22.867 -27.44 -10.158 1 60.53 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #