data_6BCZ # _model_server_result.job_id 6J5dFyRGP_FrU4zHVk0s2A _model_server_result.datetime_utc '2024-11-14 18:47:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bcz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6BCZ # _exptl.entry_id 6BCZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.547 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tert-butyl (2-{[(2R)-3-oxo-2-[(propan-2-yl)amino]-3-{[(pyridin-3-yl)methyl]amino}propyl]sulfanyl}ethyl)carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BCZ _cell.length_a 77.369 _cell.length_b 101.16 _cell.length_c 128.09 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BCZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -101.16 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -101.16 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N26 D7Y . A D7Y 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? # _chem_comp.formula 'C19 H32 N4 O3 S' _chem_comp.formula_weight 396.547 _chem_comp.id D7Y _chem_comp.mon_nstd_flag . _chem_comp.name 'tert-butyl (2-{[(2R)-3-oxo-2-[(propan-2-yl)amino]-3-{[(pyridin-3-yl)methyl]amino}propyl]sulfanyl}ethyl)carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C14 D7Y sing 83 n n O12 C11 D7Y doub 84 n n C15 C14 D7Y sing 85 n n C14 O13 D7Y sing 86 n n C14 C16 D7Y sing 87 n n C11 O13 D7Y sing 88 n n C11 N10 D7Y sing 89 n n N10 C09 D7Y sing 90 n n C09 C08 D7Y sing 91 n n C25 C24 D7Y doub 92 n y C25 N26 D7Y sing 93 n y C24 C23 D7Y sing 94 n y C08 S07 D7Y sing 95 n n N26 C27 D7Y doub 96 n y C23 C22 D7Y doub 97 n y S07 C06 D7Y sing 98 n n C27 C22 D7Y sing 99 n y C22 C21 D7Y sing 100 n n C06 C05 D7Y sing 101 n n C05 N04 D7Y sing 102 n n C05 C18 D7Y sing 103 n n N04 C02 D7Y sing 104 n n N20 C21 D7Y sing 105 n n N20 C18 D7Y sing 106 n n C18 O19 D7Y doub 107 n n C03 C02 D7Y sing 108 n n C02 C01 D7Y sing 109 n n C15 H1 D7Y sing 110 n n C15 H2 D7Y sing 111 n n C15 H3 D7Y sing 112 n n C17 H4 D7Y sing 113 n n C17 H5 D7Y sing 114 n n C17 H6 D7Y sing 115 n n C21 H7 D7Y sing 116 n n C21 H8 D7Y sing 117 n n C24 H9 D7Y sing 118 n n C02 H10 D7Y sing 119 n n C03 H11 D7Y sing 120 n n C03 H12 D7Y sing 121 n n C03 H13 D7Y sing 122 n n C06 H14 D7Y sing 123 n n C06 H15 D7Y sing 124 n n C08 H16 D7Y sing 125 n n C08 H17 D7Y sing 126 n n C09 H18 D7Y sing 127 n n C09 H19 D7Y sing 128 n n C16 H20 D7Y sing 129 n n C16 H21 D7Y sing 130 n n C16 H22 D7Y sing 131 n n C23 H23 D7Y sing 132 n n C25 H24 D7Y sing 133 n n C27 H25 D7Y sing 134 n n C01 H26 D7Y sing 135 n n C01 H27 D7Y sing 136 n n C01 H28 D7Y sing 137 n n N04 H29 D7Y sing 138 n n C05 H31 D7Y sing 139 n n N10 H32 D7Y sing 140 n n N20 H33 D7Y sing 141 n n # _atom_sites.entry_id 6BCZ _atom_sites.fract_transf_matrix[1][1] 0.012925 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007807 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 D7Y A 1 602 700 D7Y 61A . D 4 HOH A 1 701 3 HOH HOH . D 4 HOH A 2 702 11 HOH HOH . D 4 HOH A 3 703 6 HOH HOH . D 4 HOH A 4 704 8 HOH HOH . D 4 HOH A 5 705 2 HOH HOH . D 4 HOH A 6 706 1 HOH HOH . D 4 HOH A 7 707 5 HOH HOH . D 4 HOH A 8 708 9 HOH HOH . D 4 HOH A 9 709 4 HOH HOH . D 4 HOH A 10 710 7 HOH HOH . D 4 HOH A 11 711 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 D7Y . . . C 3 -19.066 -35.583 -13.262 1 168.45 ? C15 D7Y 602 A 1 HETATM 2 C C17 D7Y . . . C 3 -16.832 -36.519 -13.947 1 145.81 ? C17 D7Y 602 A 1 HETATM 3 C C21 D7Y . . . C 3 -18.563 -29.286 -7.475 1 94.93 ? C21 D7Y 602 A 1 HETATM 4 C C22 D7Y . . . C 3 -18.967 -28.689 -8.83 1 84.53 ? C22 D7Y 602 A 1 HETATM 5 C C24 D7Y . . . C 3 -18.398 -28.182 -11.133 1 88.46 ? C24 D7Y 602 A 1 HETATM 6 C C02 D7Y . . . C 3 -16.479 -34.659 -6.923 1 137.93 ? C02 D7Y 602 A 1 HETATM 7 C C03 D7Y . . . C 3 -16.314 -36.124 -7.333 1 133.69 ? C03 D7Y 602 A 1 HETATM 8 C C06 D7Y . . . C 3 -18.605 -33.81 -8.571 1 140 ? C06 D7Y 602 A 1 HETATM 9 C C08 D7Y . . . C 3 -19.777 -32.555 -11.115 1 94.04 ? C08 D7Y 602 A 1 HETATM 10 C C09 D7Y . . . C 3 -18.517 -31.692 -11.457 1 140.3 ? C09 D7Y 602 A 1 HETATM 11 O O12 D7Y . . . C 3 -16.89 -33.335 -13.683 1 194.42 ? O12 D7Y 602 A 1 HETATM 12 C C14 D7Y . . . C 3 -17.684 -36.026 -12.759 1 174.46 ? C14 D7Y 602 A 1 HETATM 13 C C16 D7Y . . . C 3 -17.92 -37.252 -11.841 1 144.59 ? C16 D7Y 602 A 1 HETATM 14 C C18 D7Y . . . C 3 -17.601 -31.727 -7.355 1 121.76 ? C18 D7Y 602 A 1 HETATM 15 O O19 D7Y . . . C 3 -17.318 -31.805 -6.161 1 127.96 ? O19 D7Y 602 A 1 HETATM 16 C C23 D7Y . . . C 3 -18.051 -28.655 -9.877 1 89.67 ? C23 D7Y 602 A 1 HETATM 17 C C25 D7Y . . . C 3 -19.708 -27.761 -11.333 1 90.9 ? C25 D7Y 602 A 1 HETATM 18 C C27 D7Y . . . C 3 -20.264 -28.261 -9.136 1 82.59 ? C27 D7Y 602 A 1 HETATM 19 C C01 D7Y . . . C 3 -15.495 -34.248 -5.845 1 134 ? C01 D7Y 602 A 1 HETATM 20 N N04 D7Y . . . C 3 -16.231 -33.807 -8.048 1 151.01 ? N04 D7Y 602 A 1 HETATM 21 C C05 D7Y . . . C 3 -17.339 -32.948 -8.385 1 158.76 ? C05 D7Y 602 A 1 HETATM 22 S S07 D7Y . . . C 3 -19.988 -32.838 -9.271 1 116.03 ? S07 D7Y 602 A 1 HETATM 23 N N10 D7Y . . . C 3 -17.274 -32.516 -11.566 1 160.91 ? N10 D7Y 602 A 1 HETATM 24 C C11 D7Y . . . C 3 -17.145 -33.581 -12.507 1 184.89 ? C11 D7Y 602 A 1 HETATM 25 O O13 D7Y . . . C 3 -17.081 -34.902 -12.007 1 192.49 ? O13 D7Y 602 A 1 HETATM 26 N N20 D7Y . . . C 3 -18.172 -30.604 -7.941 1 106.33 ? N20 D7Y 602 A 1 HETATM 27 N N26 D7Y . . . C 3 -20.62 -27.792 -10.349 1 73.64 ? N26 D7Y 602 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #