data_6BD2 # _model_server_result.job_id PZrJMkfpjH3lydZmnFB4kw _model_server_result.datetime_utc '2024-11-24 04:19:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bd2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":300}' # _entry.id 6BD2 # _exptl.entry_id 6BD2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BD2 _cell.length_a 69.883 _cell.length_b 75.002 _cell.length_c 100.216 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ASN 5 C ASN 339 1_555 C N TPO 6 C TPO 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 C C TPO 6 C TPO 340 1_555 C N LEU 7 C LEU 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 C C SER 31 C SER 365 1_555 C N SEP 32 C SEP 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 C C SEP 32 C SEP 366 1_555 C N MET 33 C MET 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 283 n n C1 C2 PEG sing 284 n n C1 H11 PEG sing 285 n n C1 H12 PEG sing 286 n n O1 HO1 PEG sing 287 n n C2 O2 PEG sing 288 n n C2 H21 PEG sing 289 n n C2 H22 PEG sing 290 n n O2 C3 PEG sing 291 n n C3 C4 PEG sing 292 n n C3 H31 PEG sing 293 n n C3 H32 PEG sing 294 n n C4 O4 PEG sing 295 n n C4 H41 PEG sing 296 n n C4 H42 PEG sing 297 n n O4 HO4 PEG sing 298 n n # _atom_sites.entry_id 6BD2 _atom_sites.fract_transf_matrix[1][1] 0.01431 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013333 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PEG A 1 300 300 PEG PEG . E 4 1PE B 1 300 300 1PE 1PE . F 5 PG4 B 1 301 301 PG4 PG4 . G 6 PGE B 1 302 302 PGE PGE . H 7 EDO B 1 303 303 EDO EDO . I 8 HOH A 1 401 41 HOH HOH . I 8 HOH A 2 402 9 HOH HOH . I 8 HOH A 3 403 23 HOH HOH . I 8 HOH A 4 404 43 HOH HOH . I 8 HOH A 5 405 42 HOH HOH . I 8 HOH A 6 406 35 HOH HOH . I 8 HOH A 7 407 11 HOH HOH . I 8 HOH A 8 408 14 HOH HOH . I 8 HOH A 9 409 47 HOH HOH . I 8 HOH A 10 410 46 HOH HOH . I 8 HOH A 11 411 45 HOH HOH . I 8 HOH A 12 412 32 HOH HOH . I 8 HOH A 13 413 36 HOH HOH . J 8 HOH B 1 401 13 HOH HOH . J 8 HOH B 2 402 48 HOH HOH . J 8 HOH B 3 403 8 HOH HOH . J 8 HOH B 4 404 25 HOH HOH . J 8 HOH B 5 405 10 HOH HOH . J 8 HOH B 6 406 1 HOH HOH . J 8 HOH B 7 407 28 HOH HOH . J 8 HOH B 8 408 20 HOH HOH . J 8 HOH B 9 409 18 HOH HOH . J 8 HOH B 10 410 17 HOH HOH . J 8 HOH B 11 411 7 HOH HOH . J 8 HOH B 12 412 15 HOH HOH . J 8 HOH B 13 413 24 HOH HOH . J 8 HOH B 14 414 5 HOH HOH . J 8 HOH B 15 415 40 HOH HOH . J 8 HOH B 16 416 37 HOH HOH . J 8 HOH B 17 417 34 HOH HOH . J 8 HOH B 18 418 31 HOH HOH . J 8 HOH B 19 419 33 HOH HOH . J 8 HOH B 20 420 39 HOH HOH . K 8 HOH C 1 401 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . D 3 -18.532 -16.087 -2.612 1 38.84 ? C1 PEG 300 A 1 HETATM 2 O O1 PEG . . . D 3 -19.911 -15.906 -2.436 1 38.55 ? O1 PEG 300 A 1 HETATM 3 C C2 PEG . . . D 3 -17.764 -15.272 -1.577 1 38.05 ? C2 PEG 300 A 1 HETATM 4 O O2 PEG . . . D 3 -16.512 -14.916 -2.097 1 30.18 ? O2 PEG 300 A 1 HETATM 5 C C3 PEG . . . D 3 -15.939 -13.844 -1.41 1 27.76 ? C3 PEG 300 A 1 HETATM 6 C C4 PEG . . . D 3 -14.615 -13.441 -2.052 1 26.36 ? C4 PEG 300 A 1 HETATM 7 O O4 PEG . . . D 3 -14.343 -12.099 -1.764 1 26.2 ? O4 PEG 300 A 1 HETATM 8 H H11 PEG . . . D 3 -18.282 -15.796 -3.502 1 46.61 ? H11 PEG 300 A 1 HETATM 9 H H12 PEG . . . D 3 -18.319 -17.027 -2.504 1 46.61 ? H12 PEG 300 A 1 HETATM 10 H HO1 PEG . . . D 3 -20.333 -16.401 -2.983 1 46.26 ? HO1 PEG 300 A 1 HETATM 11 H H21 PEG . . . D 3 -18.264 -14.467 -1.373 1 45.66 ? H21 PEG 300 A 1 HETATM 12 H H22 PEG . . . D 3 -17.647 -15.793 -0.767 1 45.66 ? H22 PEG 300 A 1 HETATM 13 H H31 PEG . . . D 3 -15.78 -14.105 -0.49 1 33.31 ? H31 PEG 300 A 1 HETATM 14 H H32 PEG . . . D 3 -16.547 -13.088 -1.428 1 33.31 ? H32 PEG 300 A 1 HETATM 15 H H41 PEG . . . D 3 -13.903 -13.996 -1.696 1 31.63 ? H41 PEG 300 A 1 HETATM 16 H H42 PEG . . . D 3 -14.67 -13.564 -3.013 1 31.63 ? H42 PEG 300 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 502 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 16 #