data_6BD2 # _model_server_result.job_id '_sT97czEzUvcmlgDZX3iFQ' _model_server_result.datetime_utc '2024-11-21 18:08:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bd2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 6BD2 # _exptl.entry_id 6BD2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BD2 _cell.length_a 69.883 _cell.length_b 75.002 _cell.length_c 100.216 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ASN 5 C ASN 339 1_555 C N TPO 6 C TPO 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 C C TPO 6 C TPO 340 1_555 C N LEU 7 C LEU 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 C C SER 31 C SER 365 1_555 C N SEP 32 C SEP 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 C C SEP 32 C SEP 366 1_555 C N MET 33 C MET 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 299 n n O1 HO1 PG4 sing 300 n n C1 C2 PG4 sing 301 n n C1 H11 PG4 sing 302 n n C1 H12 PG4 sing 303 n n C2 O2 PG4 sing 304 n n C2 H21 PG4 sing 305 n n C2 H22 PG4 sing 306 n n O2 C3 PG4 sing 307 n n C3 C4 PG4 sing 308 n n C3 H31 PG4 sing 309 n n C3 H32 PG4 sing 310 n n C4 O3 PG4 sing 311 n n C4 H41 PG4 sing 312 n n C4 H42 PG4 sing 313 n n O3 C5 PG4 sing 314 n n C5 C6 PG4 sing 315 n n C5 H51 PG4 sing 316 n n C5 H52 PG4 sing 317 n n C6 O4 PG4 sing 318 n n C6 H61 PG4 sing 319 n n C6 H62 PG4 sing 320 n n O4 C7 PG4 sing 321 n n C7 C8 PG4 sing 322 n n C7 H71 PG4 sing 323 n n C7 H72 PG4 sing 324 n n C8 O5 PG4 sing 325 n n C8 H81 PG4 sing 326 n n C8 H82 PG4 sing 327 n n O5 HO5 PG4 sing 328 n n # _atom_sites.entry_id 6BD2 _atom_sites.fract_transf_matrix[1][1] 0.01431 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013333 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PEG A 1 300 300 PEG PEG . E 4 1PE B 1 300 300 1PE 1PE . F 5 PG4 B 1 301 301 PG4 PG4 . G 6 PGE B 1 302 302 PGE PGE . H 7 EDO B 1 303 303 EDO EDO . I 8 HOH A 1 401 41 HOH HOH . I 8 HOH A 2 402 9 HOH HOH . I 8 HOH A 3 403 23 HOH HOH . I 8 HOH A 4 404 43 HOH HOH . I 8 HOH A 5 405 42 HOH HOH . I 8 HOH A 6 406 35 HOH HOH . I 8 HOH A 7 407 11 HOH HOH . I 8 HOH A 8 408 14 HOH HOH . I 8 HOH A 9 409 47 HOH HOH . I 8 HOH A 10 410 46 HOH HOH . I 8 HOH A 11 411 45 HOH HOH . I 8 HOH A 12 412 32 HOH HOH . I 8 HOH A 13 413 36 HOH HOH . J 8 HOH B 1 401 13 HOH HOH . J 8 HOH B 2 402 48 HOH HOH . J 8 HOH B 3 403 8 HOH HOH . J 8 HOH B 4 404 25 HOH HOH . J 8 HOH B 5 405 10 HOH HOH . J 8 HOH B 6 406 1 HOH HOH . J 8 HOH B 7 407 28 HOH HOH . J 8 HOH B 8 408 20 HOH HOH . J 8 HOH B 9 409 18 HOH HOH . J 8 HOH B 10 410 17 HOH HOH . J 8 HOH B 11 411 7 HOH HOH . J 8 HOH B 12 412 15 HOH HOH . J 8 HOH B 13 413 24 HOH HOH . J 8 HOH B 14 414 5 HOH HOH . J 8 HOH B 15 415 40 HOH HOH . J 8 HOH B 16 416 37 HOH HOH . J 8 HOH B 17 417 34 HOH HOH . J 8 HOH B 18 418 31 HOH HOH . J 8 HOH B 19 419 33 HOH HOH . J 8 HOH B 20 420 39 HOH HOH . K 8 HOH C 1 401 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . F 5 15.48 0.081 -30.235 1 31.28 ? O1 PG4 301 B 1 HETATM 2 C C1 PG4 . . . F 5 14.829 0.008 -28.994 1 36.4 ? C1 PG4 301 B 1 HETATM 3 C C2 PG4 . . . F 5 15.867 -0.072 -27.875 1 36.68 ? C2 PG4 301 B 1 HETATM 4 O O2 PG4 . . . F 5 16.117 1.2 -27.347 1 29.18 ? O2 PG4 301 B 1 HETATM 5 C C3 PG4 . . . F 5 17.153 1.209 -26.408 1 29.22 ? C3 PG4 301 B 1 HETATM 6 C C4 PG4 . . . F 5 17.209 2.554 -25.686 1 29.54 ? C4 PG4 301 B 1 HETATM 7 O O3 PG4 . . . F 5 17.643 3.543 -26.575 1 35.21 ? O3 PG4 301 B 1 HETATM 8 C C5 PG4 . . . F 5 18.382 4.563 -25.97 1 32.03 ? C5 PG4 301 B 1 HETATM 9 C C6 PG4 . . . F 5 18.523 5.736 -26.939 1 31.31 ? C6 PG4 301 B 1 HETATM 10 O O4 PG4 . . . F 5 17.464 5.739 -27.861 1 38.85 ? O4 PG4 301 B 1 HETATM 11 C C7 PG4 . . . F 5 17.726 5.102 -29.084 1 39.03 ? C7 PG4 301 B 1 HETATM 12 C C8 PG4 . . . F 5 16.736 5.602 -30.134 1 30.65 ? C8 PG4 301 B 1 HETATM 13 O O5 PG4 . . . F 5 17.365 6.565 -30.933 1 31.17 ? O5 PG4 301 B 1 HETATM 14 H HO1 PG4 . . . F 5 15.007 -0.307 -30.826 1 37.54 ? HO1 PG4 301 B 1 HETATM 15 H H11 PG4 . . . F 5 14.276 0.795 -28.869 1 43.69 ? H11 PG4 301 B 1 HETATM 16 H H12 PG4 . . . F 5 14.271 -0.785 -28.973 1 43.69 ? H12 PG4 301 B 1 HETATM 17 H H21 PG4 . . . F 5 15.532 -0.648 -27.17 1 44.02 ? H21 PG4 301 B 1 HETATM 18 H H22 PG4 . . . F 5 16.691 -0.444 -28.227 1 44.02 ? H22 PG4 301 B 1 HETATM 19 H H31 PG4 . . . F 5 17.993 1.063 -26.87 1 35.07 ? H31 PG4 301 B 1 HETATM 20 H H32 PG4 . . . F 5 17.016 0.5 -25.761 1 35.07 ? H32 PG4 301 B 1 HETATM 21 H H41 PG4 . . . F 5 16.327 2.785 -25.353 1 35.45 ? H41 PG4 301 B 1 HETATM 22 H H42 PG4 . . . F 5 17.828 2.491 -24.942 1 35.45 ? H42 PG4 301 B 1 HETATM 23 H H51 PG4 . . . F 5 17.916 4.86 -25.173 1 38.44 ? H51 PG4 301 B 1 HETATM 24 H H52 PG4 . . . F 5 19.26 4.225 -25.734 1 38.44 ? H52 PG4 301 B 1 HETATM 25 H H61 PG4 . . . F 5 19.364 5.66 -27.415 1 37.57 ? H61 PG4 301 B 1 HETATM 26 H H62 PG4 . . . F 5 18.512 6.567 -26.438 1 37.57 ? H62 PG4 301 B 1 HETATM 27 H H71 PG4 . . . F 5 17.645 4.14 -28.983 1 46.84 ? H71 PG4 301 B 1 HETATM 28 H H72 PG4 . . . F 5 18.626 5.323 -29.367 1 46.84 ? H72 PG4 301 B 1 HETATM 29 H H81 PG4 . . . F 5 16.444 4.86 -30.686 1 36.78 ? H81 PG4 301 B 1 HETATM 30 H H82 PG4 . . . F 5 15.97 5.999 -29.692 1 36.78 ? H82 PG4 301 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #