data_6BD2 # _model_server_result.job_id e6HVVYPh-glr8h7e9yQ8eA _model_server_result.datetime_utc '2024-11-21 17:29:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bd2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":302}' # _entry.id 6BD2 # _exptl.entry_id 6BD2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BD2 _cell.length_a 69.883 _cell.length_b 75.002 _cell.length_c 100.216 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ASN 5 C ASN 339 1_555 C N TPO 6 C TPO 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 C C TPO 6 C TPO 340 1_555 C N LEU 7 C LEU 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 C C SER 31 C SER 365 1_555 C N SEP 32 C SEP 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 C C SEP 32 C SEP 366 1_555 C N MET 33 C MET 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 329 n n C1 C2 PGE sing 330 n n C1 H1 PGE sing 331 n n C1 H12 PGE sing 332 n n O1 HO1 PGE sing 333 n n C2 O2 PGE sing 334 n n C2 H2 PGE sing 335 n n C2 H22 PGE sing 336 n n O2 C3 PGE sing 337 n n C3 C4 PGE sing 338 n n C3 H3 PGE sing 339 n n C3 H32 PGE sing 340 n n C4 O3 PGE sing 341 n n C4 H4 PGE sing 342 n n C4 H42 PGE sing 343 n n O4 C6 PGE sing 344 n n O4 HO4 PGE sing 345 n n C6 C5 PGE sing 346 n n C6 H6 PGE sing 347 n n C6 H62 PGE sing 348 n n C5 O3 PGE sing 349 n n C5 H5 PGE sing 350 n n C5 H52 PGE sing 351 n n # _atom_sites.entry_id 6BD2 _atom_sites.fract_transf_matrix[1][1] 0.01431 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013333 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PEG A 1 300 300 PEG PEG . E 4 1PE B 1 300 300 1PE 1PE . F 5 PG4 B 1 301 301 PG4 PG4 . G 6 PGE B 1 302 302 PGE PGE . H 7 EDO B 1 303 303 EDO EDO . I 8 HOH A 1 401 41 HOH HOH . I 8 HOH A 2 402 9 HOH HOH . I 8 HOH A 3 403 23 HOH HOH . I 8 HOH A 4 404 43 HOH HOH . I 8 HOH A 5 405 42 HOH HOH . I 8 HOH A 6 406 35 HOH HOH . I 8 HOH A 7 407 11 HOH HOH . I 8 HOH A 8 408 14 HOH HOH . I 8 HOH A 9 409 47 HOH HOH . I 8 HOH A 10 410 46 HOH HOH . I 8 HOH A 11 411 45 HOH HOH . I 8 HOH A 12 412 32 HOH HOH . I 8 HOH A 13 413 36 HOH HOH . J 8 HOH B 1 401 13 HOH HOH . J 8 HOH B 2 402 48 HOH HOH . J 8 HOH B 3 403 8 HOH HOH . J 8 HOH B 4 404 25 HOH HOH . J 8 HOH B 5 405 10 HOH HOH . J 8 HOH B 6 406 1 HOH HOH . J 8 HOH B 7 407 28 HOH HOH . J 8 HOH B 8 408 20 HOH HOH . J 8 HOH B 9 409 18 HOH HOH . J 8 HOH B 10 410 17 HOH HOH . J 8 HOH B 11 411 7 HOH HOH . J 8 HOH B 12 412 15 HOH HOH . J 8 HOH B 13 413 24 HOH HOH . J 8 HOH B 14 414 5 HOH HOH . J 8 HOH B 15 415 40 HOH HOH . J 8 HOH B 16 416 37 HOH HOH . J 8 HOH B 17 417 34 HOH HOH . J 8 HOH B 18 418 31 HOH HOH . J 8 HOH B 19 419 33 HOH HOH . J 8 HOH B 20 420 39 HOH HOH . K 8 HOH C 1 401 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . G 6 9.546 -1.94 -29.972 1 34.32 ? C1 PGE 302 B 1 HETATM 2 O O1 PGE . . . G 6 10.912 -1.649 -29.864 1 36.04 ? O1 PGE 302 B 1 HETATM 3 C C2 PGE . . . G 6 9.191 -3.067 -29.007 1 31.81 ? C2 PGE 302 B 1 HETATM 4 O O2 PGE . . . G 6 9.851 -2.869 -27.788 1 36.98 ? O2 PGE 302 B 1 HETATM 5 C C3 PGE . . . G 6 9.542 -3.835 -26.825 1 37.94 ? C3 PGE 302 B 1 HETATM 6 C C4 PGE . . . G 6 10.705 -3.996 -25.851 1 44.21 ? C4 PGE 302 B 1 HETATM 7 O O4 PGE . . . G 6 9.386 -5.657 -22.441 1 35.65 ? O4 PGE 302 B 1 HETATM 8 C C6 PGE . . . G 6 10.617 -6.148 -22.892 1 42.63 ? C6 PGE 302 B 1 HETATM 9 C C5 PGE . . . G 6 11.241 -5.148 -23.862 1 41.13 ? C5 PGE 302 B 1 HETATM 10 O O3 PGE . . . G 6 10.241 -4.678 -24.72 1 52.75 ? O3 PGE 302 B 1 HETATM 11 H H1 PGE . . . G 6 9.344 -2.214 -30.881 1 41.19 ? H1 PGE 302 B 1 HETATM 12 H H12 PGE . . . G 6 9.032 -1.149 -29.748 1 41.19 ? H12 PGE 302 B 1 HETATM 13 H HO1 PGE . . . G 6 11.115 -1.036 -30.416 1 43.25 ? HO1 PGE 302 B 1 HETATM 14 H H2 PGE . . . G 6 8.232 -3.079 -28.861 1 38.17 ? H2 PGE 302 B 1 HETATM 15 H H22 PGE . . . G 6 9.471 -3.915 -29.386 1 38.17 ? H22 PGE 302 B 1 HETATM 16 H H3 PGE . . . G 6 8.746 -3.569 -26.339 1 45.53 ? H3 PGE 302 B 1 HETATM 17 H H32 PGE . . . G 6 9.374 -4.686 -27.259 1 45.53 ? H32 PGE 302 B 1 HETATM 18 H H4 PGE . . . G 6 11.409 -4.514 -26.272 1 53.05 ? H4 PGE 302 B 1 HETATM 19 H H42 PGE . . . G 6 11.048 -3.125 -25.596 1 53.05 ? H42 PGE 302 B 1 HETATM 20 H H6 PGE . . . G 6 10.486 -6.998 -23.341 1 51.15 ? H6 PGE 302 B 1 HETATM 21 H H62 PGE . . . G 6 11.209 -6.272 -22.133 1 51.15 ? H62 PGE 302 B 1 HETATM 22 H H5 PGE . . . G 6 11.604 -4.398 -23.365 1 49.35 ? H5 PGE 302 B 1 HETATM 23 H H52 PGE . . . G 6 11.949 -5.577 -24.368 1 49.35 ? H52 PGE 302 B 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 1073 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 23 #