data_6BD6 # _model_server_result.job_id 8Fu4GKRTI6oJG9LTAkGmAQ _model_server_result.datetime_utc '2024-11-25 09:26:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bd6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6BD6 # _exptl.entry_id 6BD6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BD6 _cell.length_a 77.069 _cell.length_b 101.44 _cell.length_c 127.49 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BD6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -101.44 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -101.44 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N29 80K . A 80K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 190 n n CHA C4D HEM doub 191 n n CHA HHA HEM sing 192 n n CHB C4A HEM sing 193 n n CHB C1B HEM doub 194 n n CHB HHB HEM sing 195 n n CHC C4B HEM sing 196 n n CHC C1C HEM doub 197 n n CHC HHC HEM sing 198 n n CHD C4C HEM doub 199 n n CHD C1D HEM sing 200 n n CHD HHD HEM sing 201 n n C1A C2A HEM doub 202 n y C1A NA HEM sing 203 n y C2A C3A HEM sing 204 n y C2A CAA HEM sing 205 n n C3A C4A HEM doub 206 n y C3A CMA HEM sing 207 n n C4A NA HEM sing 208 n y CMA HMA HEM sing 209 n n CMA HMAA HEM sing 210 n n CMA HMAB HEM sing 211 n n CAA CBA HEM sing 212 n n CAA HAA HEM sing 213 n n CAA HAAA HEM sing 214 n n CBA CGA HEM sing 215 n n CBA HBA HEM sing 216 n n CBA HBAA HEM sing 217 n n CGA O1A HEM doub 218 n n CGA O2A HEM sing 219 n n C1B C2B HEM sing 220 n n C1B NB HEM sing 221 n n C2B C3B HEM doub 222 n n C2B CMB HEM sing 223 n n C3B C4B HEM sing 224 n n C3B CAB HEM sing 225 n n C4B NB HEM doub 226 n n CMB HMB HEM sing 227 n n CMB HMBA HEM sing 228 n n CMB HMBB HEM sing 229 n n CAB CBB HEM doub 230 n n CAB HAB HEM sing 231 n n CBB HBB HEM sing 232 n n CBB HBBA HEM sing 233 n n C1C C2C HEM sing 234 n y C1C NC HEM sing 235 n y C2C C3C HEM doub 236 n y C2C CMC HEM sing 237 n n C3C C4C HEM sing 238 n y C3C CAC HEM sing 239 n n C4C NC HEM sing 240 n y CMC HMC HEM sing 241 n n CMC HMCA HEM sing 242 n n CMC HMCB HEM sing 243 n n CAC CBC HEM doub 244 n n CAC HAC HEM sing 245 n n CBC HBC HEM sing 246 n n CBC HBCA HEM sing 247 n n C1D C2D HEM sing 248 n n C1D ND HEM doub 249 n n C2D C3D HEM doub 250 n n C2D CMD HEM sing 251 n n C3D C4D HEM sing 252 n n C3D CAD HEM sing 253 n n C4D ND HEM sing 254 n n CMD HMD HEM sing 255 n n CMD HMDA HEM sing 256 n n CMD HMDB HEM sing 257 n n CAD CBD HEM sing 258 n n CAD HAD HEM sing 259 n n CAD HADA HEM sing 260 n n CBD CGD HEM sing 261 n n CBD HBD HEM sing 262 n n CBD HBDA HEM sing 263 n n CGD O1D HEM doub 264 n n CGD O2D HEM sing 265 n n O2A H2A HEM sing 266 n n O2D H2D HEM sing 267 n n FE NA HEM sing 268 n n FE NB HEM sing 269 n n FE NC HEM sing 270 n n FE ND HEM sing 271 n n # _atom_sites.entry_id 6BD6 _atom_sites.fract_transf_matrix[1][1] 0.012975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009858 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 80K A 1 602 700 80K 80K . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -23.315 -30.851 -9.408 1 76.73 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 -22.736 -28.183 -13.431 1 75.9 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 -21.956 -24.275 -10.645 1 71.76 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 -23.027 -26.909 -6.665 1 68.27 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 -23.171 -30.419 -10.718 1 80.7 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 -23.229 -31.312 -11.854 1 73.5 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 -23.082 -30.587 -12.966 1 80.34 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 -22.909 -29.219 -12.569 1 85.44 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 -23.093 -31.107 -14.414 1 58.44 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 -23.5 -32.831 -11.799 1 57.03 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 -25.009 -32.925 -12.124 1 66.81 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 -25.461 -34.364 -12.365 1 80.19 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 -26.585 -34.663 -12.864 1 80.51 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 -24.663 -35.261 -12.011 1 63.23 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 -22.469 -26.899 -13.018 1 86.17 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 -22.125 -25.793 -13.884 1 86.88 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 -21.888 -24.741 -13.107 1 74.37 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 -22.114 -25.116 -11.742 1 80.89 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 -22.033 -25.884 -15.438 1 80.91 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 -21.509 -23.293 -13.478 1 82.24 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 -21.916 -22.673 -14.588 1 86.29 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 -22.258 -24.648 -9.347 1 85.39 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 -22.421 -23.749 -8.238 1 87.65 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 -22.719 -24.445 -7.166 1 84.12 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 -22.772 -25.845 -7.514 1 82.67 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 -22.287 -22.223 -8.27 1 86.32 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 -22.939 -23.737 -5.829 1 79.4 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 -23.395 -24.362 -4.763 1 80.95 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 -23.161 -28.226 -7.024 1 81.58 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 -23.309 -29.364 -6.138 1 90.31 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 -23.381 -30.445 -6.895 1 80.34 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 -23.282 -30.04 -8.29 1 76.64 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 -23.363 -29.313 -4.593 1 75.3 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 -23.593 -31.865 -6.392 1 71.5 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 -25.087 -32.151 -6.521 1 70.6 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 -25.405 -33.404 -5.709 1 87.95 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 -26.427 -33.475 -4.957 1 81.52 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 -24.584 -34.351 -5.788 1 88.83 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 -22.948 -29.131 -11.194 1 85.86 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 -22.461 -26.457 -11.713 1 83.59 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 -22.483 -25.935 -8.857 1 85.22 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 -23.153 -28.687 -8.32 1 84.13 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 -22.804 -27.515 -10 1 74.85 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #