data_6BD6 # _model_server_result.job_id vFPrJzDx4HnIKArdoryKCg _model_server_result.datetime_utc '2024-11-25 09:27:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bd6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6BD6 # _exptl.entry_id 6BD6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.564 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tert-butyl (2-{[(2S)-3-oxo-2-(phenylamino)-3-{[(pyridin-3-yl)methyl]amino}propyl]sulfanyl}ethyl)carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BD6 _cell.length_a 77.069 _cell.length_b 101.44 _cell.length_c 127.49 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BD6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -101.44 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -101.44 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N29 80K . A 80K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? # _chem_comp.formula 'C22 H30 N4 O3 S' _chem_comp.formula_weight 430.564 _chem_comp.id 80K _chem_comp.mon_nstd_flag . _chem_comp.name 'tert-butyl (2-{[(2S)-3-oxo-2-(phenylamino)-3-{[(pyridin-3-yl)methyl]amino}propyl]sulfanyl}ethyl)carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O07 C06 80K doub 1 n n C28 C27 80K doub 2 n y C28 N29 80K sing 3 n y C01 C02 80K sing 4 n n C27 C26 80K sing 5 n y C04 C02 80K sing 6 n n N29 C30 80K doub 7 n y C06 O05 80K sing 8 n n C06 N08 80K sing 9 n n C02 O05 80K sing 10 n n C02 C03 80K sing 11 n n C26 C25 80K doub 12 n y N08 C09 80K sing 13 n n C30 C25 80K sing 14 n y C25 C24 80K sing 15 n n C09 C10 80K sing 16 n n C12 S11 80K sing 17 n n C12 C13 80K sing 18 n n N14 C13 80K sing 19 n n N14 C15 80K sing 20 n n C24 N23 80K sing 21 n n S11 C10 80K sing 22 n n N23 C21 80K sing 23 n n C13 C21 80K sing 24 n n C21 O22 80K doub 25 n n C16 C15 80K doub 26 n y C16 C17 80K sing 27 n y C15 C20 80K sing 28 n y C17 C18 80K doub 29 n y C20 C19 80K doub 30 n y C18 C19 80K sing 31 n y C01 H1 80K sing 32 n n C01 H2 80K sing 33 n n C01 H3 80K sing 34 n n C03 H4 80K sing 35 n n C03 H5 80K sing 36 n n C03 H6 80K sing 37 n n C04 H7 80K sing 38 n n C04 H8 80K sing 39 n n C04 H9 80K sing 40 n n C09 H10 80K sing 41 n n C09 H11 80K sing 42 n n C10 H12 80K sing 43 n n C10 H13 80K sing 44 n n C12 H14 80K sing 45 n n C12 H15 80K sing 46 n n C13 H16 80K sing 47 n n C16 H17 80K sing 48 n n C17 H18 80K sing 49 n n C18 H19 80K sing 50 n n C19 H20 80K sing 51 n n C20 H21 80K sing 52 n n C24 H22 80K sing 53 n n C24 H23 80K sing 54 n n C26 H24 80K sing 55 n n C27 H25 80K sing 56 n n C28 H26 80K sing 57 n n C30 H27 80K sing 58 n n N08 H28 80K sing 59 n n N14 H29 80K sing 60 n n N23 H30 80K sing 61 n n # _atom_sites.entry_id 6BD6 _atom_sites.fract_transf_matrix[1][1] 0.012975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009858 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 80K A 1 602 700 80K 80K . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 80K . . . C 3 -18.691 -31.406 -10.825 1 81.36 ? C01 80K 602 A 1 HETATM 2 C C02 80K . . . C 3 -19.257 -32.318 -9.694 1 99.23 ? C02 80K 602 A 1 HETATM 3 C C03 80K . . . C 3 -19.914 -31.51 -8.648 1 104.78 ? C03 80K 602 A 1 HETATM 4 C C04 80K . . . C 3 -20.275 -33.333 -10.29 1 97.3 ? C04 80K 602 A 1 HETATM 5 C C06 80K . . . C 3 -17.431 -34.082 -9.72 1 128.03 ? C06 80K 602 A 1 HETATM 6 C C09 80K . . . C 3 -17.406 -35.793 -7.839 1 121.26 ? C09 80K 602 A 1 HETATM 7 C C10 80K . . . C 3 -16.761 -35.276 -6.483 1 133.5 ? C10 80K 602 A 1 HETATM 8 C C12 80K . . . C 3 -15.492 -32.473 -7.429 1 127.15 ? C12 80K 602 A 1 HETATM 9 C C13 80K . . . C 3 -15.46 -31.358 -6.404 1 111.55 ? C13 80K 602 A 1 HETATM 10 C C15 80K . . . C 3 -13.789 -29.418 -5.714 1 122.08 ? C15 80K 602 A 1 HETATM 11 C C16 80K . . . C 3 -12.524 -28.797 -5.914 1 120.09 ? C16 80K 602 A 1 HETATM 12 C C17 80K . . . C 3 -11.935 -27.952 -4.883 1 116.22 ? C17 80K 602 A 1 HETATM 13 C C18 80K . . . C 3 -12.612 -27.731 -3.655 1 116.22 ? C18 80K 602 A 1 HETATM 14 C C19 80K . . . C 3 -13.882 -28.346 -3.453 1 129.16 ? C19 80K 602 A 1 HETATM 15 C C20 80K . . . C 3 -14.457 -29.192 -4.48 1 131.17 ? C20 80K 602 A 1 HETATM 16 C C21 80K . . . C 3 -16.884 -30.657 -6.387 1 109.27 ? C21 80K 602 A 1 HETATM 17 C C24 80K . . . C 3 -18.33 -28.52 -6.711 1 85.09 ? C24 80K 602 A 1 HETATM 18 C C25 80K . . . C 3 -18.823 -28.268 -8.213 1 72.74 ? C25 80K 602 A 1 HETATM 19 C C26 80K . . . C 3 -17.942 -28.339 -9.306 1 68.12 ? C26 80K 602 A 1 HETATM 20 C C27 80K . . . C 3 -18.404 -28.113 -10.659 1 70.76 ? C27 80K 602 A 1 HETATM 21 C C28 80K . . . C 3 -19.792 -27.822 -10.868 1 89.36 ? C28 80K 602 A 1 HETATM 22 C C30 80K . . . C 3 -20.178 -27.976 -8.492 1 83.55 ? C30 80K 602 A 1 HETATM 23 N N08 80K . . . C 3 -16.781 -35.122 -9.009 1 121.15 ? N08 80K 602 A 1 HETATM 24 N N14 80K . . . C 3 -14.419 -30.305 -6.751 1 115.05 ? N14 80K 602 A 1 HETATM 25 N N23 80K . . . C 3 -17.084 -29.291 -6.652 1 103.5 ? N23 80K 602 A 1 HETATM 26 N N29 80K . . . C 3 -20.598 -27.76 -9.775 1 77.09 ? N29 80K 602 A 1 HETATM 27 O O05 80K . . . C 3 -18.227 -33.112 -9.049 1 118.63 ? O05 80K 602 A 1 HETATM 28 O O07 80K . . . C 3 -17.316 -33.985 -10.967 1 139.17 ? O07 80K 602 A 1 HETATM 29 O O22 80K . . . C 3 -17.944 -31.347 -6.134 1 114.71 ? O22 80K 602 A 1 HETATM 30 S S11 80K . . . C 3 -15.175 -34.162 -6.683 1 137.37 ? S11 80K 602 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #