data_6BDH
#
_model_server_result.job_id            cklmPfl06tlHHHvoTy3PRQ 
_model_server_result.datetime_utc      '2024-11-14 19:35:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bdh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    6BDH 
#
_exptl.entry_id    6BDH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              520.686 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'tert-butyl [(2S)-1-{[(2S)-3-oxo-2-(phenylamino)-3-{[(pyridin-3-yl)methyl]amino}propyl]sulfanyl}-3-phenylpropan-2-yl]carbamate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6BDH 
_cell.length_a            76.37 
_cell.length_b            99.88 
_cell.length_c            125.93 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BDH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -76.37 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N27 DEV . A DEV 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
#
_chem_comp.formula           'C29 H36 N4 O3 S' 
_chem_comp.formula_weight    520.686 
_chem_comp.id                DEV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'tert-butyl [(2S)-1-{[(2S)-3-oxo-2-(phenylamino)-3-{[(pyridin-3-yl)methyl]amino}propyl]sulfanyl}-3-phenylpropan-2-yl]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C03 C02 DEV sing 83 n n 
C01 C02 DEV sing 84 n n 
C02 O05 DEV sing 85 n n 
C02 C04 DEV sing 86 n n 
O05 C06 DEV sing 87 n n 
O07 C06 DEV doub 88 n n 
C06 N08 DEV sing 89 n n 
N08 C09 DEV sing 90 n n 
C28 C29 DEV doub 91 n y 
C28 N27 DEV sing 92 n y 
C29 C30 DEV sing 93 n y 
C37 C36 DEV doub 94 n y 
C37 C32 DEV sing 95 n y 
C36 C35 DEV sing 96 n y 
C09 C10 DEV sing 97 n n 
C09 C31 DEV sing 98 n n 
N27 C26 DEV doub 99 n y 
C10 S11 DEV sing 100 n n 
C31 C32 DEV sing 101 n n 
C32 C33 DEV doub 102 n y 
C30 C25 DEV doub 103 n y 
C35 C34 DEV doub 104 n y 
C33 C34 DEV sing 105 n y 
C26 C25 DEV sing 106 n y 
C25 C24 DEV sing 107 n n 
S11 C12 DEV sing 108 n n 
C12 C13 DEV sing 109 n n 
C24 N23 DEV sing 110 n n 
N23 C21 DEV sing 111 n n 
O22 C21 DEV doub 112 n n 
C21 C13 DEV sing 113 n n 
N14 C13 DEV sing 114 n n 
N14 C15 DEV sing 115 n n 
C16 C15 DEV doub 116 n y 
C16 C17 DEV sing 117 n y 
C15 C20 DEV sing 118 n y 
C17 C18 DEV doub 119 n y 
C20 C19 DEV doub 120 n y 
C18 C19 DEV sing 121 n y 
C16 H1 DEV sing 122 n n 
C17 H2 DEV sing 123 n n 
C19 H3 DEV sing 124 n n 
N23 H4 DEV sing 125 n n 
C24 H5 DEV sing 126 n n 
C24 H6 DEV sing 127 n n 
C26 H7 DEV sing 128 n n 
C01 H8 DEV sing 129 n n 
C01 H9 DEV sing 130 n n 
C01 H10 DEV sing 131 n n 
C03 H11 DEV sing 132 n n 
C03 H12 DEV sing 133 n n 
C03 H13 DEV sing 134 n n 
C04 H14 DEV sing 135 n n 
C04 H15 DEV sing 136 n n 
C04 H16 DEV sing 137 n n 
C09 H17 DEV sing 138 n n 
C10 H18 DEV sing 139 n n 
C10 H19 DEV sing 140 n n 
C12 H20 DEV sing 141 n n 
C12 H21 DEV sing 142 n n 
C13 H22 DEV sing 143 n n 
C18 H23 DEV sing 144 n n 
C20 H24 DEV sing 145 n n 
C28 H25 DEV sing 146 n n 
C29 H26 DEV sing 147 n n 
C30 H27 DEV sing 148 n n 
C31 H28 DEV sing 149 n n 
C31 H29 DEV sing 150 n n 
C33 H30 DEV sing 151 n n 
C34 H31 DEV sing 152 n n 
C35 H32 DEV sing 153 n n 
C36 H33 DEV sing 154 n n 
C37 H34 DEV sing 155 n n 
N08 H35 DEV sing 156 n n 
N14 H36 DEV sing 157 n n 
#
_atom_sites.entry_id                     6BDH 
_atom_sites.fract_transf_matrix[1][1]    0.013094 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010012 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007941 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 DEV A 1 602 700 DEV 77A . 
D 4 HOH A 1 701 12 HOH HOH . 
D 4 HOH A 2 702 7 HOH HOH . 
D 4 HOH A 3 703 15 HOH HOH . 
D 4 HOH A 4 704 9 HOH HOH . 
D 4 HOH A 5 705 4 HOH HOH . 
D 4 HOH A 6 706 14 HOH HOH . 
D 4 HOH A 7 707 1 HOH HOH . 
D 4 HOH A 8 708 13 HOH HOH . 
D 4 HOH A 9 709 25 HOH HOH . 
D 4 HOH A 10 710 16 HOH HOH . 
D 4 HOH A 11 711 10 HOH HOH . 
D 4 HOH A 12 712 24 HOH HOH . 
D 4 HOH A 13 713 6 HOH HOH . 
D 4 HOH A 14 714 5 HOH HOH . 
D 4 HOH A 15 715 19 HOH HOH . 
D 4 HOH A 16 716 27 HOH HOH . 
D 4 HOH A 17 717 21 HOH HOH . 
D 4 HOH A 18 718 30 HOH HOH . 
D 4 HOH A 19 719 20 HOH HOH . 
D 4 HOH A 20 720 29 HOH HOH . 
D 4 HOH A 21 721 17 HOH HOH . 
D 4 HOH A 22 722 23 HOH HOH . 
D 4 HOH A 23 723 22 HOH HOH . 
D 4 HOH A 24 724 11 HOH HOH . 
D 4 HOH A 25 725 2 HOH HOH . 
D 4 HOH A 26 726 28 HOH HOH . 
D 4 HOH A 27 727 8 HOH HOH . 
D 4 HOH A 28 728 26 HOH HOH . 
D 4 HOH A 29 729 18 HOH HOH . 
D 4 HOH A 30 730 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C16 DEV . . . C 3 -25.415 -21.642 -4.603 1 139.63 ? C16 DEV 602 A 1 
HETATM 2 C C17 DEV . . . C 3 -26.124 -22.159 -3.506 1 138.81 ? C17 DEV 602 A 1 
HETATM 3 C C19 DEV . . . C 3 -25.187 -20.421 -2.128 1 146.62 ? C19 DEV 602 A 1 
HETATM 4 C C21 DEV . . . C 3 -21.377 -19.623 -5.867 1 128.74 ? C21 DEV 602 A 1 
HETATM 5 N N23 DEV . . . C 3 -21.232 -21.012 -6.133 1 115.08 ? N23 DEV 602 A 1 
HETATM 6 C C24 DEV . . . C 3 -19.912 -21.769 -6.454 1 100.74 ? C24 DEV 602 A 1 
HETATM 7 C C25 DEV . . . C 3 -19.557 -22.11 -7.938 1 77.63 ? C25 DEV 602 A 1 
HETATM 8 C C26 DEV . . . C 3 -18.27 -22.515 -8.286 1 71.24 ? C26 DEV 602 A 1 
HETATM 9 C C01 DEV . . . C 3 -23.191 -22.787 -13.287 1 150.46 ? C01 DEV 602 A 1 
HETATM 10 C C02 DEV . . . C 3 -23.929 -21.498 -12.859 1 155.23 ? C02 DEV 602 A 1 
HETATM 11 C C03 DEV . . . C 3 -24.983 -21.29 -13.937 1 153 ? C03 DEV 602 A 1 
HETATM 12 C C04 DEV . . . C 3 -24.557 -21.744 -11.475 1 156.64 ? C04 DEV 602 A 1 
HETATM 13 C C06 DEV . . . C 3 -23.386 -19.167 -12.144 1 142.2 ? C06 DEV 602 A 1 
HETATM 14 C C09 DEV . . . C 3 -22.554 -18.229 -9.906 1 117.08 ? C09 DEV 602 A 1 
HETATM 15 C C10 DEV . . . C 3 -23.958 -17.751 -9.515 1 122.41 ? C10 DEV 602 A 1 
HETATM 16 C C12 DEV . . . C 3 -23.141 -17.755 -6.464 1 139.57 ? C12 DEV 602 A 1 
HETATM 17 C C13 DEV . . . C 3 -22.798 -18.952 -5.522 1 133.37 ? C13 DEV 602 A 1 
HETATM 18 C C15 DEV . . . C 3 -24.578 -20.498 -4.472 1 135.53 ? C15 DEV 602 A 1 
HETATM 19 C C18 DEV . . . C 3 -26.015 -21.547 -2.259 1 145.28 ? C18 DEV 602 A 1 
HETATM 20 C C20 DEV . . . C 3 -24.477 -19.896 -3.214 1 139.19 ? C20 DEV 602 A 1 
HETATM 21 C C28 DEV . . . C 3 -18.763 -22.718 -10.557 1 71.29 ? C28 DEV 602 A 1 
HETATM 22 C C29 DEV . . . C 3 -20.081 -22.342 -10.325 1 66.01 ? C29 DEV 602 A 1 
HETATM 23 C C30 DEV . . . C 3 -20.453 -22.039 -9.007 1 67.44 ? C30 DEV 602 A 1 
HETATM 24 C C31 DEV . . . C 3 -21.559 -17.152 -9.506 1 106.21 ? C31 DEV 602 A 1 
HETATM 25 C C32 DEV . . . C 3 -20.206 -17.613 -9.315 1 107.5 ? C32 DEV 602 A 1 
HETATM 26 C C33 DEV . . . C 3 -19.416 -17.064 -8.333 1 113.14 ? C33 DEV 602 A 1 
HETATM 27 C C34 DEV . . . C 3 -18.141 -17.522 -8.157 1 102.36 ? C34 DEV 602 A 1 
HETATM 28 C C35 DEV . . . C 3 -17.65 -18.52 -8.949 1 99.74 ? C35 DEV 602 A 1 
HETATM 29 C C36 DEV . . . C 3 -18.419 -19.077 -9.926 1 98.09 ? C36 DEV 602 A 1 
HETATM 30 C C37 DEV . . . C 3 -19.693 -18.623 -10.095 1 105.85 ? C37 DEV 602 A 1 
HETATM 31 N N08 DEV . . . C 3 -22.416 -18.501 -11.399 1 131.13 ? N08 DEV 602 A 1 
HETATM 32 N N14 DEV . . . C 3 -23.85 -19.982 -5.601 1 130.45 ? N14 DEV 602 A 1 
HETATM 33 N N27 DEV . . . C 3 -17.872 -22.814 -9.538 1 59.99 ? N27 DEV 602 A 1 
HETATM 34 O O05 DEV . . . C 3 -22.983 -20.376 -12.728 1 156.31 ? O05 DEV 602 A 1 
HETATM 35 O O07 DEV . . . C 3 -24.331 -18.534 -12.598 1 141.51 ? O07 DEV 602 A 1 
HETATM 36 O O22 DEV . . . C 3 -20.383 -18.884 -5.9 1 134.74 ? O22 DEV 602 A 1 
HETATM 37 S S11 DEV . . . C 3 -24.382 -18.306 -7.779 1 138.69 ? S11 DEV 602 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           37 
#