data_6BDI # _model_server_result.job_id xbrZwIRUQsOahGPqG_tB0w _model_server_result.datetime_utc '2024-11-14 19:06:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bdi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6BDI # _exptl.entry_id 6BDI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 525.706 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tert-butyl [(2S)-1-(1H-indol-3-yl)-3-{[(2R)-3-oxo-2-[(propan-2-yl)amino]-3-{[(pyridin-3-yl)methyl]amino}propyl]sulfanyl}propan-2-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BDI _cell.length_a 77.61 _cell.length_b 102.43 _cell.length_c 127.76 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BDI _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -77.61 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N36 DEJ . A DEJ 602 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.271 ? metalc ? metalc3 B FE HEM . A HEM 601 1_555 C N36 DEJ . A DEJ 602 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.303 ? # _chem_comp.formula 'C28 H39 N5 O3 S' _chem_comp.formula_weight 525.706 _chem_comp.id DEJ _chem_comp.mon_nstd_flag . _chem_comp.name 'tert-butyl [(2S)-1-(1H-indol-3-yl)-3-{[(2R)-3-oxo-2-[(propan-2-yl)amino]-3-{[(pyridin-3-yl)methyl]amino}propyl]sulfanyl}propan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C18 DEJ doub 83 n y C19 C14 DEJ sing 84 n y N13 C14 DEJ sing 85 n y N13 C12 DEJ sing 86 n y C18 C17 DEJ sing 87 n y C27 C24 DEJ sing 88 n n C14 C15 DEJ doub 89 n y C26 C24 DEJ sing 90 n n C12 C11 DEJ doub 91 n y C24 C25 DEJ sing 92 n n C24 O23 DEJ sing 93 n n O22 C21 DEJ doub 94 n n C17 C16 DEJ doub 95 n y C15 C11 DEJ sing 96 n y C15 C16 DEJ sing 97 n y C11 C10 DEJ sing 98 n n C21 O23 DEJ sing 99 n n C21 N20 DEJ sing 100 n n C10 C09 DEJ sing 101 n n N20 C09 DEJ sing 102 n n C35 C34 DEJ doub 103 n y C35 N36 DEJ sing 104 n y C09 C08 DEJ sing 105 n n C34 C33 DEJ sing 106 n y C03 C02 DEJ sing 107 n n N36 C37 DEJ doub 108 n y C01 C02 DEJ sing 109 n n C33 C32 DEJ doub 110 n y C08 S07 DEJ sing 111 n n C02 N04 DEJ sing 112 n n C37 C32 DEJ sing 113 n y S07 C06 DEJ sing 114 n n C32 C31 DEJ sing 115 n n C05 N04 DEJ sing 116 n n C05 C06 DEJ sing 117 n n C05 C28 DEJ sing 118 n n N30 C31 DEJ sing 119 n n N30 C28 DEJ sing 120 n n C28 O29 DEJ doub 121 n n C01 H1 DEJ sing 122 n n C01 H2 DEJ sing 123 n n C01 H3 DEJ sing 124 n n C02 H4 DEJ sing 125 n n C03 H5 DEJ sing 126 n n C03 H6 DEJ sing 127 n n C03 H7 DEJ sing 128 n n C05 H8 DEJ sing 129 n n C06 H9 DEJ sing 130 n n C06 H10 DEJ sing 131 n n C08 H11 DEJ sing 132 n n C08 H12 DEJ sing 133 n n C09 H13 DEJ sing 134 n n C10 H14 DEJ sing 135 n n C10 H15 DEJ sing 136 n n C12 H16 DEJ sing 137 n n C16 H17 DEJ sing 138 n n C17 H18 DEJ sing 139 n n C18 H19 DEJ sing 140 n n C19 H20 DEJ sing 141 n n C25 H21 DEJ sing 142 n n C25 H22 DEJ sing 143 n n C25 H23 DEJ sing 144 n n C26 H24 DEJ sing 145 n n C26 H25 DEJ sing 146 n n C26 H26 DEJ sing 147 n n C27 H27 DEJ sing 148 n n C27 H28 DEJ sing 149 n n C27 H29 DEJ sing 150 n n C31 H30 DEJ sing 151 n n C31 H31 DEJ sing 152 n n C33 H32 DEJ sing 153 n n C34 H33 DEJ sing 154 n n C35 H34 DEJ sing 155 n n C37 H35 DEJ sing 156 n n N04 H36 DEJ sing 157 n n N13 H38 DEJ sing 158 n n N20 H39 DEJ sing 159 n n N30 H40 DEJ sing 160 n n # _atom_sites.entry_id 6BDI _atom_sites.fract_transf_matrix[1][1] 0.012885 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007827 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 DEJ A 1 602 700 DEJ 71G . D 4 HOH A 1 701 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 DEJ . A . C 3 -23.336 -19.441 -9.284 0.59 51.57 ? C01 DEJ 602 A 1 HETATM 2 C C01 DEJ . B . C 3 -23.631 -14.981 -7.167 0.41 102.31 ? C01 DEJ 602 A 1 HETATM 3 C C02 DEJ . A . C 3 -24.119 -18.211 -8.729 0.59 91.59 ? C02 DEJ 602 A 1 HETATM 4 C C02 DEJ . B . C 3 -23.103 -15.951 -6.078 0.41 104.51 ? C02 DEJ 602 A 1 HETATM 5 C C03 DEJ . A . C 3 -24.215 -17.199 -9.863 0.59 83.29 ? C03 DEJ 602 A 1 HETATM 6 C C03 DEJ . B . C 3 -21.827 -15.416 -5.47 0.41 102.25 ? C03 DEJ 602 A 1 HETATM 7 C C05 DEJ . A . C 3 -21.925 -17.49 -7.609 0.59 109.32 ? C05 DEJ 602 A 1 HETATM 8 C C05 DEJ . B . C 3 -21.874 -17.599 -7.636 0.41 108.61 ? C05 DEJ 602 A 1 HETATM 9 C C06 DEJ . A . C 3 -21.311 -16.09 -7.389 0.59 105.96 ? C06 DEJ 602 A 1 HETATM 10 C C06 DEJ . B . C 3 -20.957 -16.399 -8.246 0.41 108.4 ? C06 DEJ 602 A 1 HETATM 11 C C08 DEJ . A . C 3 -19.095 -17.681 -9.03 0.59 114.48 ? C08 DEJ 602 A 1 HETATM 12 C C08 DEJ . B . C 3 -19.081 -18.362 -9.497 0.41 114.34 ? C08 DEJ 602 A 1 HETATM 13 C C09 DEJ . A . C 3 -19.578 -17.905 -10.506 0.59 119.13 ? C09 DEJ 602 A 1 HETATM 14 C C09 DEJ . B . C 3 -19.596 -18.349 -10.945 0.41 118.9 ? C09 DEJ 602 A 1 HETATM 15 C C10 DEJ . A . C 3 -20.841 -17.033 -10.835 0.59 123.97 ? C10 DEJ 602 A 1 HETATM 16 C C10 DEJ . B . C 3 -20.954 -17.534 -11.216 0.41 123.1 ? C10 DEJ 602 A 1 HETATM 17 C C11 DEJ . A . C 3 -20.893 -16.273 -12.106 0.59 130.64 ? C11 DEJ 602 A 1 HETATM 18 C C11 DEJ . B . C 3 -20.979 -16.558 -12.329 0.41 130.56 ? C11 DEJ 602 A 1 HETATM 19 C C12 DEJ . A . C 3 -19.999 -16.489 -13.175 0.59 129.98 ? C12 DEJ 602 A 1 HETATM 20 C C12 DEJ . B . C 3 -20.049 -16.618 -13.368 0.41 129.8 ? C12 DEJ 602 A 1 HETATM 21 C C14 DEJ . A . C 3 -21.397 -14.793 -13.849 0.59 132.55 ? C14 DEJ 602 A 1 HETATM 22 C C14 DEJ . B . C 3 -21.377 -14.811 -13.853 0.41 132.73 ? C14 DEJ 602 A 1 HETATM 23 C C15 DEJ . A . C 3 -21.79 -15.177 -12.548 0.59 127.38 ? C15 DEJ 602 A 1 HETATM 24 C C15 DEJ . B . C 3 -21.851 -15.375 -12.64 0.41 127.37 ? C15 DEJ 602 A 1 HETATM 25 C C16 DEJ . A . C 3 -22.89 -14.456 -12.003 0.59 132.25 ? C16 DEJ 602 A 1 HETATM 26 C C16 DEJ . B . C 3 -22.969 -14.713 -12.057 0.41 132.08 ? C16 DEJ 602 A 1 HETATM 27 C C17 DEJ . A . C 3 -23.535 -13.438 -12.719 0.59 133.48 ? C17 DEJ 602 A 1 HETATM 28 C C17 DEJ . B . C 3 -23.549 -13.587 -12.655 0.41 133.29 ? C17 DEJ 602 A 1 HETATM 29 C C18 DEJ . A . C 3 -23.106 -13.093 -14.019 0.59 135.43 ? C18 DEJ 602 A 1 HETATM 30 C C18 DEJ . B . C 3 -23.037 -13.065 -13.868 0.41 135.16 ? C18 DEJ 602 A 1 HETATM 31 C C19 DEJ . A . C 3 -22.04 -13.765 -14.594 0.59 134.1 ? C19 DEJ 602 A 1 HETATM 32 C C19 DEJ . B . C 3 -21.951 -13.669 -14.478 0.41 134.2 ? C19 DEJ 602 A 1 HETATM 33 C C21 DEJ . A . C 3 -20.465 -19.893 -11.946 0.59 121.56 ? C21 DEJ 602 A 1 HETATM 34 C C21 DEJ . B . C 3 -20.517 -20.209 -12.352 0.41 120.97 ? C21 DEJ 602 A 1 HETATM 35 C C24 DEJ . A . C 3 -22.493 -21.199 -12.897 0.59 120.99 ? C24 DEJ 602 A 1 HETATM 36 C C24 DEJ . B . C 3 -22.661 -21.37 -13.05 0.41 121.11 ? C24 DEJ 602 A 1 HETATM 37 C C25 DEJ . A . C 3 -23.805 -21.779 -12.325 0.59 126.33 ? C25 DEJ 602 A 1 HETATM 38 C C25 DEJ . B . C 3 -23.94 -21.838 -12.366 0.41 125.57 ? C25 DEJ 602 A 1 HETATM 39 C C26 DEJ . A . C 3 -21.76 -22.383 -13.598 0.59 121.43 ? C26 DEJ 602 A 1 HETATM 40 C C26 DEJ . B . C 3 -22.125 -22.595 -13.818 0.41 119.66 ? C26 DEJ 602 A 1 HETATM 41 C C27 DEJ . A . C 3 -22.847 -20.084 -13.894 0.59 120.13 ? C27 DEJ 602 A 1 HETATM 42 C C27 DEJ . B . C 3 -23.006 -20.228 -14.02 0.41 120.57 ? C27 DEJ 602 A 1 HETATM 43 C C28 DEJ . A . C 3 -21.239 -18.578 -6.732 0.59 103.44 ? C28 DEJ 602 A 1 HETATM 44 C C28 DEJ . B . C 3 -21.044 -18.726 -6.986 0.41 103.25 ? C28 DEJ 602 A 1 HETATM 45 C C31 DEJ . A . C 3 -20.353 -21.053 -6.884 0.59 88.4 ? C31 DEJ 602 A 1 HETATM 46 C C31 DEJ . B . C 3 -20.548 -21.227 -6.948 0.41 87.45 ? C31 DEJ 602 A 1 HETATM 47 C C32 DEJ . A . C 3 -19.951 -21.749 -8.155 0.59 76.21 ? C32 DEJ 602 A 1 HETATM 48 C C32 DEJ . B . C 3 -20.069 -21.846 -8.201 0.41 77.01 ? C32 DEJ 602 A 1 HETATM 49 C C33 DEJ . A . C 3 -20.862 -22.111 -9.119 0.59 71.34 ? C33 DEJ 602 A 1 HETATM 50 C C33 DEJ . B . C 3 -20.934 -22.266 -9.184 0.41 71.37 ? C33 DEJ 602 A 1 HETATM 51 C C34 DEJ . A . C 3 -20.51 -22.716 -10.302 0.59 72.06 ? C34 DEJ 602 A 1 HETATM 52 C C34 DEJ . B . C 3 -20.51 -22.824 -10.372 0.41 74.2 ? C34 DEJ 602 A 1 HETATM 53 C C35 DEJ . A . C 3 -19.166 -22.943 -10.541 0.59 71.72 ? C35 DEJ 602 A 1 HETATM 54 C C35 DEJ . B . C 3 -19.147 -22.929 -10.587 0.41 71.92 ? C35 DEJ 602 A 1 HETATM 55 C C37 DEJ . A . C 3 -18.652 -22.003 -8.486 0.59 76.44 ? C37 DEJ 602 A 1 HETATM 56 C C37 DEJ . B . C 3 -18.737 -21.975 -8.507 0.41 74.55 ? C37 DEJ 602 A 1 HETATM 57 N N04 DEJ . A . C 3 -23.445 -17.584 -7.46 0.59 103.97 ? N04 DEJ 602 A 1 HETATM 58 N N04 DEJ . B . C 3 -22.949 -17.313 -6.562 0.41 105.58 ? N04 DEJ 602 A 1 HETATM 59 N N13 DEJ . A . C 3 -20.301 -15.59 -14.242 0.59 133.56 ? N13 DEJ 602 A 1 HETATM 60 N N13 DEJ . B . C 3 -20.282 -15.568 -14.292 0.41 133.45 ? N13 DEJ 602 A 1 HETATM 61 N N20 DEJ . A . C 3 -19.822 -19.342 -10.774 0.59 120.5 ? N20 DEJ 602 A 1 HETATM 62 N N20 DEJ . B . C 3 -19.739 -19.754 -11.314 0.41 120.91 ? N20 DEJ 602 A 1 HETATM 63 N N30 DEJ . A . C 3 -20.962 -19.814 -7.295 0.59 97.78 ? N30 DEJ 602 A 1 HETATM 64 N N30 DEJ . B . C 3 -21.214 -20.042 -7.358 0.41 97.08 ? N30 DEJ 602 A 1 HETATM 65 N N36 DEJ . A . C 3 -18.267 -22.607 -9.627 0.59 66.36 ? N36 DEJ 602 A 1 HETATM 66 N N36 DEJ . B . C 3 -18.286 -22.52 -9.651 0.41 68.25 ? N36 DEJ 602 A 1 HETATM 67 O O22 DEJ . A . C 3 -19.688 -20.43 -12.772 0.59 124.86 ? O22 DEJ 602 A 1 HETATM 68 O O22 DEJ . B . C 3 -19.856 -20.71 -13.284 0.41 123.87 ? O22 DEJ 602 A 1 HETATM 69 O O23 DEJ . A . C 3 -21.716 -20.554 -11.825 0.59 123.54 ? O23 DEJ 602 A 1 HETATM 70 O O23 DEJ . B . C 3 -21.733 -20.839 -12.066 0.41 122.02 ? O23 DEJ 602 A 1 HETATM 71 O O29 DEJ . A . C 3 -20.923 -18.267 -5.554 0.59 107.98 ? O29 DEJ 602 A 1 HETATM 72 O O29 DEJ . B . C 3 -20.213 -18.406 -6.109 0.41 109.41 ? O29 DEJ 602 A 1 HETATM 73 S S07 DEJ . A . C 3 -19.66 -16.025 -8.26 0.59 123.55 ? S07 DEJ 602 A 1 HETATM 74 S S07 DEJ . B . C 3 -19.154 -16.853 -8.619 0.41 101.81 ? S07 DEJ 602 A 1 # _model_server_stats.io_time_ms 119 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 74 #