data_6BDO
#
_model_server_result.job_id            RnzqcVTtwYh_-yRv7IvCkw 
_model_server_result.datetime_utc      '2025-01-11 19:46:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bdo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":601}' 
#
_entry.id    6BDO 
#
_exptl.entry_id    6BDO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.17 
_cell.angle_gamma         90 
_cell.entry_id            6BDO 
_cell.length_a            72.847 
_cell.length_b            114.342 
_cell.length_c            130.061 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BDO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     6BDO 
_atom_sites.fract_transf_matrix[1][1]    0.013727 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000279 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008746 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00769 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD B 1 601 601 FAD FAD . 
F 3 HQO B 1 602 800 HQO HQO . 
G 2 FAD A 1 601 601 FAD FAD . 
H 2 FAD D 1 601 601 FAD FAD . 
I 2 FAD C 1 601 601 FAD FAD . 
J 3 HQO C 1 602 800 HQO HQO . 
K 4 HOH B 1 701 57 HOH HOH . 
K 4 HOH B 2 702 70 HOH HOH . 
K 4 HOH B 3 703 55 HOH HOH . 
K 4 HOH B 4 704 64 HOH HOH . 
K 4 HOH B 5 705 58 HOH HOH . 
K 4 HOH B 6 706 50 HOH HOH . 
K 4 HOH B 7 707 54 HOH HOH . 
K 4 HOH B 8 708 52 HOH HOH . 
K 4 HOH B 9 709 59 HOH HOH . 
K 4 HOH B 10 710 60 HOH HOH . 
K 4 HOH B 11 711 69 HOH HOH . 
K 4 HOH B 12 712 61 HOH HOH . 
K 4 HOH B 13 713 74 HOH HOH . 
K 4 HOH B 14 714 62 HOH HOH . 
L 4 HOH A 1 701 71 HOH HOH . 
L 4 HOH A 2 702 73 HOH HOH . 
L 4 HOH A 3 703 4 HOH HOH . 
L 4 HOH A 4 704 6 HOH HOH . 
L 4 HOH A 5 705 15 HOH HOH . 
L 4 HOH A 6 706 8 HOH HOH . 
L 4 HOH A 7 707 3 HOH HOH . 
L 4 HOH A 8 708 65 HOH HOH . 
L 4 HOH A 9 709 7 HOH HOH . 
L 4 HOH A 10 710 14 HOH HOH . 
L 4 HOH A 11 711 16 HOH HOH . 
L 4 HOH A 12 712 12 HOH HOH . 
L 4 HOH A 13 713 11 HOH HOH . 
L 4 HOH A 14 714 72 HOH HOH . 
M 4 HOH D 1 701 22 HOH HOH . 
M 4 HOH D 2 702 21 HOH HOH . 
M 4 HOH D 3 703 30 HOH HOH . 
N 4 HOH C 1 701 43 HOH HOH . 
N 4 HOH C 2 702 47 HOH HOH . 
N 4 HOH C 3 703 67 HOH HOH . 
N 4 HOH C 4 704 34 HOH HOH . 
N 4 HOH C 5 705 46 HOH HOH . 
N 4 HOH C 6 706 42 HOH HOH . 
N 4 HOH C 7 707 37 HOH HOH . 
N 4 HOH C 8 708 29 HOH HOH . 
N 4 HOH C 9 709 66 HOH HOH . 
N 4 HOH C 10 710 45 HOH HOH . 
N 4 HOH C 11 711 68 HOH HOH . 
N 4 HOH C 12 712 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . G 2 -9.651 -9.336 29.465 1 50.4 ? PA FAD 601 A 1 
HETATM 2 O O1A FAD . . . G 2 -10.169 -8.1 28.791 1 40.21 ? O1A FAD 601 A 1 
HETATM 3 O O2A FAD . . . G 2 -8.192 -9.177 29.719 1 47.35 ? O2A FAD 601 A 1 
HETATM 4 O O5B FAD . . . G 2 -10.388 -9.53 30.895 1 52.5 ? O5B FAD 601 A 1 
HETATM 5 C C5B FAD . . . G 2 -11.205 -10.679 31.117 1 46.4 ? C5B FAD 601 A 1 
HETATM 6 C C4B FAD . . . G 2 -12.306 -10.315 32.179 1 50.51 ? C4B FAD 601 A 1 
HETATM 7 O O4B FAD . . . G 2 -12.459 -11.31 32.982 1 53.23 ? O4B FAD 601 A 1 
HETATM 8 C C3B FAD . . . G 2 -11.876 -9.128 33.04 1 47.59 ? C3B FAD 601 A 1 
HETATM 9 O O3B FAD . . . G 2 -12.919 -8.218 33.195 1 43.91 ? O3B FAD 601 A 1 
HETATM 10 C C2B FAD . . . G 2 -11.448 -9.767 34.365 1 48 ? C2B FAD 601 A 1 
HETATM 11 O O2B FAD . . . G 2 -11.678 -8.821 35.542 1 61.42 ? O2B FAD 601 A 1 
HETATM 12 C C1B FAD . . . G 2 -12.203 -10.798 34.477 1 44.06 ? C1B FAD 601 A 1 
HETATM 13 N N9A FAD . . . G 2 -11.556 -11.855 35.16 1 45.72 ? N9A FAD 601 A 1 
HETATM 14 C C8A FAD . . . G 2 -10.272 -12.269 35.021 1 47.25 ? C8A FAD 601 A 1 
HETATM 15 N N7A FAD . . . G 2 -10.081 -13.325 35.854 1 43.07 ? N7A FAD 601 A 1 
HETATM 16 C C5A FAD . . . G 2 -11.25 -13.563 36.497 1 47.32 ? C5A FAD 601 A 1 
HETATM 17 C C6A FAD . . . G 2 -11.607 -14.511 37.439 1 51.66 ? C6A FAD 601 A 1 
HETATM 18 N N6A FAD . . . G 2 -10.879 -15.592 38.087 1 50.85 ? N6A FAD 601 A 1 
HETATM 19 N N1A FAD . . . G 2 -12.865 -14.532 37.931 1 51.16 ? N1A FAD 601 A 1 
HETATM 20 C C2A FAD . . . G 2 -13.788 -13.618 37.496 1 48.98 ? C2A FAD 601 A 1 
HETATM 21 N N3A FAD . . . G 2 -13.44 -12.681 36.563 1 45.13 ? N3A FAD 601 A 1 
HETATM 22 C C4A FAD . . . G 2 -12.166 -12.656 36.064 1 49.71 ? C4A FAD 601 A 1 
HETATM 23 N N1 FAD . . . G 2 -5.535 -5.239 21.531 1 53.3 ? N1 FAD 601 A 1 
HETATM 24 C C2 FAD . . . G 2 -5.866 -4.757 20.19 1 58.56 ? C2 FAD 601 A 1 
HETATM 25 O O2 FAD . . . G 2 -6.398 -5.516 19.372 1 70.25 ? O2 FAD 601 A 1 
HETATM 26 N N3 FAD . . . G 2 -5.566 -3.375 19.818 1 59.04 ? N3 FAD 601 A 1 
HETATM 27 C C4 FAD . . . G 2 -4.952 -2.504 20.766 1 52.82 ? C4 FAD 601 A 1 
HETATM 28 O O4 FAD . . . G 2 -4.704 -1.413 20.509 1 59.91 ? O4 FAD 601 A 1 
HETATM 29 C C4X FAD . . . G 2 -4.625 -3.013 22.119 1 49.4 ? C4X FAD 601 A 1 
HETATM 30 N N5 FAD . . . G 2 -4.016 -2.122 23.04 1 56.25 ? N5 FAD 601 A 1 
HETATM 31 C C5X FAD . . . G 2 -3.68 -2.607 24.396 1 49.53 ? C5X FAD 601 A 1 
HETATM 32 C C6 FAD . . . G 2 -3.072 -1.729 25.331 1 49.02 ? C6 FAD 601 A 1 
HETATM 33 C C7 FAD . . . G 2 -2.761 -2.196 26.611 1 46.26 ? C7 FAD 601 A 1 
HETATM 34 C C7M FAD . . . G 2 -2.123 -0.966 27.326 1 47.28 ? C7M FAD 601 A 1 
HETATM 35 C C8 FAD . . . G 2 -3.051 -3.521 26.96 1 45.18 ? C8 FAD 601 A 1 
HETATM 36 C C8M FAD . . . G 2 -2.654 -3.92 28.417 1 44.93 ? C8M FAD 601 A 1 
HETATM 37 C C9 FAD . . . G 2 -3.648 -4.382 26.035 1 48.57 ? C9 FAD 601 A 1 
HETATM 38 C C9A FAD . . . G 2 -3.963 -3.92 24.751 1 46.53 ? C9A FAD 601 A 1 
HETATM 39 N N10 FAD . . . G 2 -4.588 -4.837 23.816 1 48.77 ? N10 FAD 601 A 1 
HETATM 40 C C10 FAD . . . G 2 -4.918 -4.366 22.482 1 53.14 ? C10 FAD 601 A 1 
HETATM 41 C C1' FAD . . . G 2 -4.868 -6.243 24.246 1 42.74 ? C1' FAD 601 A 1 
HETATM 42 C C2' FAD . . . G 2 -6.314 -6.378 24.776 1 44.67 ? C2' FAD 601 A 1 
HETATM 43 O O2' FAD . . . G 2 -6.573 -5.396 25.728 1 48.34 ? O2' FAD 601 A 1 
HETATM 44 C C3' FAD . . . G 2 -6.53 -7.726 25.416 1 44.73 ? C3' FAD 601 A 1 
HETATM 45 O O3' FAD . . . G 2 -5.975 -8.704 24.59 1 45.66 ? O3' FAD 601 A 1 
HETATM 46 C C4' FAD . . . G 2 -8.045 -7.926 25.584 1 49.86 ? C4' FAD 601 A 1 
HETATM 47 O O4' FAD . . . G 2 -8.436 -7.603 26.858 1 49.27 ? O4' FAD 601 A 1 
HETATM 48 C C5' FAD . . . G 2 -8.486 -9.372 25.26 1 48.9 ? C5' FAD 601 A 1 
HETATM 49 O O5' FAD . . . G 2 -8.454 -10.19 26.416 1 49.79 ? O5' FAD 601 A 1 
HETATM 50 P P FAD . . . G 2 -9.835 -10.771 27.015 1 46.31 ? P FAD 601 A 1 
HETATM 51 O O1P FAD . . . G 2 -10.991 -10.024 26.425 1 43.08 ? O1P FAD 601 A 1 
HETATM 52 O O2P FAD . . . G 2 -9.921 -12.265 26.679 1 45.44 ? O2P FAD 601 A 1 
HETATM 53 O O3P FAD . . . G 2 -9.876 -10.646 28.588 1 57.86 ? O3P FAD 601 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           98 
_model_server_stats.create_model_time_ms    141 
_model_server_stats.query_time_ms           421 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           53 
#